Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0578 ATGATTTCAATGTTAAATGGGTTGAAGGACAAGGAAGTTGAGGTCATCTTCACTTTATGGAATATTGAAGCTCTCAATATTCGTTTCAAGGGAGTCCAATTTACATTTGACCTCGATAAACGGTTCGCGTGCGGTGCAGCAGATCAAGCTCCTCCCGATGTTTTAAATACTGGACAAAACCGAAACCCTAGGATCCCCTCAGCCTCTGCAACACTTCTCTGCGAGTTCGCTTTGCTGCCGGCGTTTGCAATGGCGGTCTCATTGAGCGACGTTAAGTCGGCAGCCGGTCTGAAAAATCTCGATGACTACCTGCTCAGTCGTAGTTACATTTCTGGGTATCAGGCTTCAAAGGATGATATCGCTGTTTACGAAGCTCTCTCCAAACCCGTTTCCAGCGAGTATGTCAACGTAGCTAGGTGGAGCAACCACATCGAAGCACTCTTGAGAGTCTCTGCTGTCTTTGGAGAGGGTTCGGGCGTCAAGTTCGCAGAAGCAGTTGCAACCCCACCGGCTGCGGATGCAAAGGCTAGCGCTGATGATGACGATGACGATGACATGGATCTGTTTGGTGAAGAGACTGAAGAGGAGAAGAAGGCTGCTGAGGAGCGTGCAGCCGCCATCAAGGCTTCTGCAAAGAAGAAAGAGAGTGGCAAGTCATCAGTTCTGATGGATATCAAGCCTTGGGATGATGAAACTGACATGAAGAAACTTGAAGAGGCTGTAAGAGGCGTTCATATGGAAGGCTTGCTTTGGGGAGCATCCAAACTTGTACCTGTTGGATATGGTATCAAGAAATTGCAGATAATGCTCACAATTGTTGATGACCTTGTGTCTGTTGACAATCTCATTGAGGAGCATCTGACAGTTGAACCCATAAACGAACATGTCCAGAGCTGTGATATCGTGGCCTTCAACAAAATCTGTAAGTCCCAAGTTTTATTTTGTTACTCAAGCTGGTTAGTAGTTACAGAATTAAAATTTATGTTTTGGAATGGTGCTGTTAAATTAAAGCAACTGGAGAACCTTTTCACGAGATATTTGATCCGTCATTTCTTTAACAATTGGGTGTCAATTGTTGCAGAAATGAAGCTTTTTTTCAAGCCCAAGAAGCAGATCGTTGCAAAGATGAGGCCTAGTCTGCGAATGAATACGTTTCGTTCTTTGTTCAAGACCGTGTATGCCTGTTTCTCGTCTGTACCTTTTTAA 1206 44.78 MISMLNGLKDKEVEVIFTLWNIEALNIRFKGVQFTFDLDKRFACGAADQAPPDVLNTGQNRNPRIPSASATLLCEFALLPAFAMAVSLSDVKSAAGLKNLDDYLLSRSYISGYQASKDDIAVYEALSKPVSSEYVNVARWSNHIEALLRVSAVFGEGSGVKFAEAVATPPAADAKASADDDDDDDMDLFGEETEEEKKAAEERAAAIKASAKKKESGKSSVLMDIKPWDDETDMKKLEEAVRGVHMEGLLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLTVEPINEHVQSCDIVAFNKICKSQVLFCYSSWLVVTELKFMFWNGAVKLKQLENLFTRYLIRHFFNNWVSIVAEMKLFFKPKKQIVAKMRPSLRMNTFRSLFKTVYACFSSVPF 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4459051 4461562 + Lag0024623.1 Lac10g0578 583109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0578 401 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 84 307 IPR049720 GO:0003746(InterPro)|GO:0005085(PANTHER)|GO:0005829(PANTHER)|GO:0005853(InterPro)|GO:0006414(PANTHER)
Lac10g0578 401 FunFam Elongation factor 1-beta 1 like 212 307 - -
Lac10g0578 401 SUPERFAMILY eEF-1beta-like 215 307 IPR036219 -
Lac10g0578 401 Pfam EF-1 guanine nucleotide exchange domain 220 307 IPR014038 GO:0003746(InterPro)|GO:0006414(InterPro)
Lac10g0578 401 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 296 307 IPR001326 GO:0003746(InterPro)|GO:0006414(InterPro)
Lac10g0578 401 MobiDBLite consensus disorder prediction 177 191 - -
Lac10g0578 401 SMART EF1_GNE_2 218 307 IPR014038 GO:0003746(InterPro)|GO:0006414(InterPro)
Lac10g0578 401 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 182 190 IPR001326 GO:0003746(InterPro)|GO:0006414(InterPro)
Lac10g0578 401 Coils Coil 190 210 - -
Lac10g0578 401 Gene3D - 211 307 IPR014717 -
Lac10g0578 401 CDD EF1B 216 307 IPR014038 GO:0003746(InterPro)|GO:0006414(InterPro)
Lac10g0578 401 FunFam Elongation factor 1-delta 1 86 161 - -
Lac10g0578 401 Gene3D - 78 158 - -
Lac10g0578 401 SUPERFAMILY GST C-terminal domain-like 91 152 IPR036282 -
Lac10g0578 401 MobiDBLite consensus disorder prediction 171 197 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0576 Lac-Chr10:4416372 Lac10g0578 Lac-Chr10:4459051 1.70E-88 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0578 K03232 - csv:101215827 327.791