Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0582 ATGGCGACGACGACCACCAGTCTTGGCGGCGGCGGCGGCGGCGGCGGTGGTGGTGCAGAGGATAGAGTTATGGCTACCGCTCAGCAGATAGTCAAGAGCCTCAACACCCCGAAGGAGGTTCGAGACGACATGCTTTTGATCTTCTCTAGTTTCGACAATCGTCTCTCTAATATCACCAGTTTGGTCAACAGTGGGGATTCGAAGAGAGAGGCGGATCGATTTGAAGCTGCTGAGAAGGTGATTCTTCGGTGGGATTCTGGTCATGGAGCTTCTAGGAACTCCCTTTATTGGGAGGACTCGCCGGATGAGGCGGCTGAGTATTTATCGGCGGTTGATGATATCATTCAGTGGATCGACGACTTGTCAATTCGTTCTGATTCGGCTGAGATCGTCGACCGTGCTGAGAACGCGATCCAGATCGCTATGTCGAGGCTTGAGGACGAGTTTCGTCATATGTTGATTCGGAGCACCGTTCCTTTCGATGCTGAGCACCTCTATGGTTCAATTCGGAGGGTTTCCCTCTCTTTCGCTTCACACGACGAAAATTCCGATGAATTTGAGTCGTTTGCCGATGCTGACCGTGGTTCGGGAATTTTCCATGAGCGTGGTGTCAGTTTGGGTGATGATTTGCGGGTCGATTTGATCCATCCTGACGCCGTCGATGATTTGAAAGAGATCGCCGACCGGATGATTCGGTCTGGATACGAAAAAGAGTGTGTTAATGCCTATACTGGTGTCCGACGCGATGCTTTAGATGAGTGCTTGGTGGTTCTTGGAGTTGAGAAGCTAAGTATTGAGGATGTCCAGAAAATTGACTGGAAAATTTTGGACGAGAAAATGAAGAAATGGATCCAAGCTGTGAAGGTCAGTGTTCGAGTACTTTTGACGGGCGAGAAGCGATTGTGTGACTATATCTTTAGTGGGTCTGATGACTCTGAAGAAGTTTGTTTCAATGAGACTGCAAAAGGATGCATCCGGCAATTACTGAATTTTGCAGAGGCCATTGCTATAGGGGAAAGGTCAGTGGAGAAGCTATTTCGTATCCTTGATATGTATGAAGCTCTGGCATACGTTTTACCAGACTTGCAGGCTATGGTCACTGATGAATTTGTGATCGAGGAGGCGAAAGGAGTGCTTTCTAGGCTGGGAGAGGCCGCGAAAGGTACATTTGTTGAATTTGAGAATGCTGTTCGAAGTGAGACTTCTAAGAAAACAATGTTAAATGCTGAGATTCACCCGCTCACTCGTTATGTGATGAATTACTTACGATTGCTGGTGGTTTATAGTAAGACTCTGGATGAACTTTTAGAAGGCGAGGATGAGGATTTGCATCATCTAGGTGATGATGGTGCTGACAATTTGGAGTTAGAAACTATGTCTCCTTTAGCTCGTCGACTGTTTTCATTGATATCATCTCTGGAGACGAATCTTGAGAGAAAATCCAAACTTTATGGTGATGATTCTATACAATATATATTTCTCATGAATAATATACAATACATCGTGCAGAAAGTGAAAGATTCTGAGCTTGGAAAGCTCTTGGGTGACCGCTGGGTTCGCAAGCGCCGAGGCCAAGTTCGCATATATGCAACGAATTATCTCAGGGCTTCTTGGGGCAAACTATTATCTTTCTTGAAGGAAGAAGGTACTGGTGGGAGCTCCAATAGTGCCCTGAAACTAGCTACTTTAAAGGAAAAATTCAAAAATTTCAATGCTGGCTTTGAGGAAACCTATAGAATTCAGACAGCTTGGAAGGTTGCAGATGCTCAACTACGAGAAGAGCTCCGAATTTCAGTATCTGCAAAGGTGTTGCCTGCATATCGTGCCTTCTTGGGAAGACATGGAAGTCAGTTAGAGAATACAAGACATCCTGGGAGGTATATAAAGTACACATCGGATGACTTGGAGAACTATTTATTGGATTTGTTTGAAGGATCACCTTGTGTTATACACCACTTACGAAGAAAAAGTAGTTCATAG 1980 45.3 MATTTTSLGGGGGGGGGGAEDRVMATAQQIVKSLNTPKEVRDDMLLIFSSFDNRLSNITSLVNSGDSKREADRFEAAEKVILRWDSGHGASRNSLYWEDSPDEAAEYLSAVDDIIQWIDDLSIRSDSAEIVDRAENAIQIAMSRLEDEFRHMLIRSTVPFDAEHLYGSIRRVSLSFASHDENSDEFESFADADRGSGIFHERGVSLGDDLRVDLIHPDAVDDLKEIADRMIRSGYEKECVNAYTGVRRDALDECLVVLGVEKLSIEDVQKIDWKILDEKMKKWIQAVKVSVRVLLTGEKRLCDYIFSGSDDSEEVCFNETAKGCIRQLLNFAEAIAIGERSVEKLFRILDMYEALAYVLPDLQAMVTDEFVIEEAKGVLSRLGEAAKGTFVEFENAVRSETSKKTMLNAEIHPLTRYVMNYLRLLVVYSKTLDELLEGEDEDLHHLGDDGADNLELETMSPLARRLFSLISSLETNLERKSKLYGDDSIQYIFLMNNIQYIVQKVKDSELGKLLGDRWVRKRRGQVRIYATNYLRASWGKLLSFLKEEGTGGSSNSALKLATLKEKFKNFNAGFEETYRIQTAWKVADAQLREELRISVSAKVLPAYRAFLGRHGSQLENTRHPGRYIKYTSDDLENYLLDLFEGSPCVIHHLRRKSSS 659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4476452 4478431 - Lag0024627.1 Lac10g0582 583113

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0582 659 SUPERFAMILY Cullin repeat-like 71 644 IPR016159 -
Lac10g0582 659 MobiDBLite consensus disorder prediction 1 20 - -
Lac10g0582 659 Gene3D Exocyst complex component Exo70 88 649 - -
Lac10g0582 659 Pfam Exo70 exocyst complex subunit C-terminal 281 641 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Lac10g0582 659 FunFam Exocyst subunit Exo70 family protein 90 651 - -
Lac10g0582 659 PANTHER EXOCYST COMPLEX PROTEIN EXO70 29 646 IPR004140 GO:0000145(InterPro)|GO:0000145(PANTHER)|GO:0006887(PANTHER)|GO:0006887(InterPro)
Lac10g0582 659 Pfam Exocyst complex component Exo70 N-terminal 74 154 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0582 K07195 - - csv:101212753 1167.14
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0582 Lac-Chr10:4476452 Lac13g0596 Lac-Chr13:4412545 1.10E-92 dispersed
Lac10g0148 Lac-Chr10:1122317 Lac10g0582 Lac-Chr10:4476452 1.60E-104 transposed
Lac12g2533 Lac-Chr12:42209252 Lac10g0582 Lac-Chr10:4476452 7.00E-125 transposed
Lac4g0533 Lac-Chr4:12131319 Lac10g0582 Lac-Chr10:4476452 9.10E-119 transposed
Lac6g0241 Lac-Chr6:1967922 Lac10g0582 Lac-Chr10:4476452 5.70E-29 transposed
Lac7g2884 Lac-Chr7:47942878 Lac10g0582 Lac-Chr10:4476452 3.90E-111 transposed
Lac10g0582 Lac-Chr10:4476452 Lac3g0086 Lac-Chr3:577593 6.70E-255 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g116 . Blo16g00265 . . Bpe12g00483 Bpe13g00204 Bma06g00256 . Cmo13g00835 . Cma10g00065 Cma11g00035 Car10g00053 Car11g00032 . Cpe20g00308 Cpe04g01614 . . . . . . . . . . . . . . . . . Cone19ag0206 . . Chy12g01170 Cme12g01592 . . Bda11g01602 Bda14g01366 . Bpe15g00216 Bma03g01256 . Sed08g2438 Cmo10g00061 Cmo11g00037 Cma13g00803 Cma18g00319 Car13g00651 Car18g00228 Cpe09g00962 . Bhi08g01486 Tan05g2961 Cmetu04g0927 Lac10g0582 Hepe07g2107 . . Cla03g00352 Cam03g0370 Cec03g0358 Cco03g0373 Clacu03g0370 Cmu03g0976 Cre03g0668 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac13g0596 . 10 653 EXO70 exocyst subunit family AT5G03540 76.6 1.4e-284 976.1
Lac1g2316 . 1 600 EXO70 exocyst subunit family AT5G03540 71.6 4.2e-249 858.2
Lac1g2316 . 1 603 EXO70 exocyst subunit family AT5G52340 78.6 5.2e-273 937.6
Lac13g0596 . 12 653 EXO70 exocyst subunit family AT5G52340 74.0 1.3e-271 932.9
Lac13g0596 . 147 653 EXO70 exocyst subunit family AT5G52350 58.7 4.9e-164 575.5
Lac1g2316 . 145 603 EXO70 exocyst subunit family AT5G52350 61.7 1.7e-156 550.4
Lac7g2884 . 1 624 EXO70 exocyst subunit family AT5G58430 67.1 2.0e-245 845.9
Lac7g2884 . 1 623 EXO70 exocyst subunit family AT1G07000 51.2 3.8e-172 602.4
Lac7g1288 . 55 668 EXO70 exocyst subunit family AT5G13150 53.1 1.2e-174 610.9
Lac8g1970 . 102 715 EXO70 exocyst subunit family AT5G13990 53.8 3.3e-188 656.0
Lac12g2533 . 106 706 EXO70 exocyst subunit family AT1G72470 65.2 8.2e-218 754.2
Lac12g2533 . 106 704 EXO70 exocyst subunit family AT1G54090 63.3 2.1e-213 739.6
Lac12g2533 . 106 705 EXO70 exocyst subunit family AT3G14090 65.3 6.4e-223 771.2
Lac10g0582 . 19 657 EXO70 exocyst subunit family AT5G50380 64.2 7.0e-231 797.7
Lac3g0086 . 13 650 EXO70 exocyst subunit family AT5G50380 62.6 3.3e-228 788.9
Lac6g1170 . 15 682 EXO70 exocyst subunit family AT4G31540 73.7 4.5e-294 1007.7
Lac13g0853 . 59 609 EXO70 exocyst subunit family AT3G55150 50.8 2.3e-151 533.5
Lac7g2632 . 1 172 EXO70 exocyst subunit family AT3G55150 52.3 1.6e-43 175.3
Lac13g0853 . 24 606 EXO70 exocyst subunit family AT2G39380 51.1 9.0e-156 548.1
Lac10g3074 . 25 632 EXO70 exocyst subunit family AT3G09520 54.9 2.0e-179 626.7
Lac9g2512 . 12 600 EXO70 exocyst subunit family AT5G59730 50.2 1.4e-156 550.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001393 4 1 3 4 4 2 4 2 2 2 2 2 4 2 2 3 2 2 4 2 2 2 2 2 2 2 2 4 2 1 74