Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0594 ATGGCATCTTCAACTTCAGGATCATCGAAGAGAGCTAGAGGAGCTAACAATGGCGGCACTCAGCCAGTTTCTTGCCTTGTAGATGGCTGCAATTCAGATCTAAGCAACTGTAGAGATTACCACAGGCGCCATAAGGTTTGTGAGCTGCATTCCAAGACTCCTCAGGTCACAATTGGTGGCCTTAAACAGAGGTTCTGCCAGCAGTGTAGTAGGTTTCATTCGCTTGAGGAATTTGACGAAGGAAAAAGAAGCTGCCGCAAACGACTCGACGGCCACAACCGGCGACGGCGAAAGCCTCAAACTGACCTCTTGCCTCGATCTGCTGGCCATTTCTCCTATCATCAAGCTCCTCACTTGTTGCCATTTACAAGCTCGCAAGTTTTCCCATCCACCACCGTGAGCAGCCACGGCTGGTCCTCGGCCGTCAGCGACGGCGCAGGAGATCCCGCCGCCCTCCACAACCGGAACCAGCAACTAAATTTCCTCGAAAAACAGAGCCTTTATGTGGAAACTTCCGAGCACAGCAGCAGCAGCAACTACAAAGCGGCGCAGCCACTGGCCTTCTTGCACGGCGGGCCGACAACATGCCAACCCCTCCTCCGAACCATCAACACCCTGTCAGAAAACGGCGGCGGTGGCGGCGGCGGCGGCGGGGAAAGGAACAAAATGATTTACGACAGGTTCAGAATTGGGGTTAGTGAATCAGATTGTGCTCTCTCTCTTCTGTCAACACCGCAGACTCAGACTGATCATCAGCCGCAGCAGGCCGAGAGTGGATCTTCTGGGCATCTGGGTTTGAGCAGAATCGAACAGCAACAGCGTAACGCCGCCATTTCTTCTCTGCTGCAGCCGTTGAGCCACCACCACCATAACCACGACAGTTTTGAGAATTCCGATTCTTCTTCGGTTCGGATTCCGAATGACACTCATGGGAGCGCCGTTAATTTCACCGGAATCTTTGGAATCGCCTCCGACAATGCTGGAAATGAATCCCCTTCTACTCTTCCGTTTCACTGGGAGTAG 1023 53.18 MASSTSGSSKRARGANNGGTQPVSCLVDGCNSDLSNCRDYHRRHKVCELHSKTPQVTIGGLKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQTDLLPRSAGHFSYHQAPHLLPFTSSQVFPSTTVSSHGWSSAVSDGAGDPAALHNRNQQLNFLEKQSLYVETSEHSSSSNYKAAQPLAFLHGGPTTCQPLLRTINTLSENGGGGGGGGGERNKMIYDRFRIGVSESDCALSLLSTPQTQTDHQPQQAESGSSGHLGLSRIEQQQRNAAISSLLQPLSHHHHNHDSFENSDSSSVRIPNDTHGSAVNFTGIFGIASDNAGNESPSTLPFHWE 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4560081 4561758 - Lag0024639.1 Lac10g0594 583125

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0594 340 ProSiteProfiles Zinc finger SBP-type profile. 22 99 IPR004333 GO:0003677(InterPro)
Lac10g0594 340 MobiDBLite consensus disorder prediction 244 263 - -
Lac10g0594 340 FunFam Squamosa promoter-binding-like protein 14 16 86 - -
Lac10g0594 340 SUPERFAMILY SBT domain 23 104 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Lac10g0594 340 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 2 307 IPR044817 GO:0003677(InterPro)
Lac10g0594 340 Pfam SBP domain 25 98 IPR004333 GO:0003677(InterPro)
Lac10g0594 340 MobiDBLite consensus disorder prediction 286 307 - -
Lac10g0594 340 Gene3D - 15 86 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0594 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0181 Lac-Chr10:1381499 Lac10g0594 Lac-Chr10:4560081 1.60E-31 dispersed
Lac10g0594 Lac-Chr10:4560081 Lac8g0092 Lac-Chr8:1279799 1.50E-32 dispersed
Lac13g0043 Lac-Chr13:324637 Lac10g0594 Lac-Chr10:4560081 3.20E-30 transposed
Lac10g0594 Lac-Chr10:4560081 Lac3g0067 Lac-Chr3:464972 3.50E-74 wgd
Lac10g0594 Lac-Chr10:4560081 Lac4g2158 Lac-Chr4:41238440 5.90E-45 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac10g0594 . 4 142 SBP-box Gene Family AT5G50570 64.3 5.6e-46 182.6
Lac4g2158 . 29 149 SBP-box Gene Family AT5G50570 63.1 1.3e-37 154.8
Lac2g0018 . 1 1068 SBP-box Gene Family AT1G20980 50.2 8.3e-268 921.0
Lac10g0594 . 4 142 SBP-box Gene Family AT5G50570 64.3 5.6e-46 182.6
Lac4g2158 . 29 149 SBP-box Gene Family AT5G50570 63.1 1.3e-37 154.8
Lac10g0594 . 4 142 SBP-box Gene Family AT5G50670 64.3 5.6e-46 182.6
Lac4g2158 . 29 149 SBP-box Gene Family AT5G50670 63.1 1.3e-37 154.8
Lac2g0018 . 1 1068 SBP-box Gene Family AT1G20980 50.2 8.3e-268 921.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011451 0 3 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 2 0 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22737 PF03110 SBP 5.10E-31 No_clan Lac TF