Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0594 ATGGCATCTTCAACTTCAGGATCATCGAAGAGAGCTAGAGGAGCTAACAATGGCGGCACTCAGCCAGTTTCTTGCCTTGTAGATGGCTGCAATTCAGATCTAAGCAACTGTAGAGATTACCACAGGCGCCATAAGGTTTGTGAGCTGCATTCCAAGACTCCTCAGGTCACAATTGGTGGCCTTAAACAGAGGTTCTGCCAGCAGTGTAGTAGGTTTCATTCGCTTGAGGAATTTGACGAAGGAAAAAGAAGCTGCCGCAAACGACTCGACGGCCACAACCGGCGACGGCGAAAGCCTCAAACTGACCTCTTGCCTCGATCTGCTGGCCATTTCTCCTATCATCAAGCTCCTCACTTGTTGCCATTTACAAGCTCGCAAGTTTTCCCATCCACCACCGTGAGCAGCCACGGCTGGTCCTCGGCCGTCAGCGACGGCGCAGGAGATCCCGCCGCCCTCCACAACCGGAACCAGCAACTAAATTTCCTCGAAAAACAGAGCCTTTATGTGGAAACTTCCGAGCACAGCAGCAGCAGCAACTACAAAGCGGCGCAGCCACTGGCCTTCTTGCACGGCGGGCCGACAACATGCCAACCCCTCCTCCGAACCATCAACACCCTGTCAGAAAACGGCGGCGGTGGCGGCGGCGGCGGCGGGGAAAGGAACAAAATGATTTACGACAGGTTCAGAATTGGGGTTAGTGAATCAGATTGTGCTCTCTCTCTTCTGTCAACACCGCAGACTCAGACTGATCATCAGCCGCAGCAGGCCGAGAGTGGATCTTCTGGGCATCTGGGTTTGAGCAGAATCGAACAGCAACAGCGTAACGCCGCCATTTCTTCTCTGCTGCAGCCGTTGAGCCACCACCACCATAACCACGACAGTTTTGAGAATTCCGATTCTTCTTCGGTTCGGATTCCGAATGACACTCATGGGAGCGCCGTTAATTTCACCGGAATCTTTGGAATCGCCTCCGACAATGCTGGAAATGAATCCCCTTCTACTCTTCCGTTTCACTGGGAGTAG 1023 53.18 MASSTSGSSKRARGANNGGTQPVSCLVDGCNSDLSNCRDYHRRHKVCELHSKTPQVTIGGLKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQTDLLPRSAGHFSYHQAPHLLPFTSSQVFPSTTVSSHGWSSAVSDGAGDPAALHNRNQQLNFLEKQSLYVETSEHSSSSNYKAAQPLAFLHGGPTTCQPLLRTINTLSENGGGGGGGGGERNKMIYDRFRIGVSESDCALSLLSTPQTQTDHQPQQAESGSSGHLGLSRIEQQQRNAAISSLLQPLSHHHHNHDSFENSDSSSVRIPNDTHGSAVNFTGIFGIASDNAGNESPSTLPFHWE 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4560081 4561758 - Lag0024639.1 Lac10g0594 583125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0594 340 ProSiteProfiles Zinc finger SBP-type profile. 22 99 IPR004333 GO:0003677(InterPro)
Lac10g0594 340 MobiDBLite consensus disorder prediction 244 263 - -
Lac10g0594 340 FunFam Squamosa promoter-binding-like protein 14 16 86 - -
Lac10g0594 340 SUPERFAMILY SBT domain 23 104 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Lac10g0594 340 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 2 307 IPR044817 GO:0003677(InterPro)
Lac10g0594 340 Pfam SBP domain 25 98 IPR004333 GO:0003677(InterPro)
Lac10g0594 340 MobiDBLite consensus disorder prediction 286 307 - -
Lac10g0594 340 Gene3D - 15 86 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0181 Lac-Chr10:1381499 Lac10g0594 Lac-Chr10:4560081 1.60E-31 dispersed
Lac10g0594 Lac-Chr10:4560081 Lac8g0092 Lac-Chr8:1279799 1.50E-32 dispersed
Lac13g0043 Lac-Chr13:324637 Lac10g0594 Lac-Chr10:4560081 3.20E-30 transposed
Lac10g0594 Lac-Chr10:4560081 Lac3g0067 Lac-Chr3:464972 3.50E-74 wgd
Lac10g0594 Lac-Chr10:4560081 Lac4g2158 Lac-Chr4:41238440 5.90E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22737 PF03110 SBP 5.10E-31 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0594 - - - 0.0