Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0606 ATGGGTTGCGTTCTTGGCAGACAACCCGCCGACGCTCCCCGGTCCGCATCCGGGCCTCCCCGTCGCCGCCGGAGCACCGATCACCACTCTCGTCTCGACGGACTTAATGGCCAGAGGCTTAACAAACAGACGACTTCGGCGGAAAAGCAGGGACTGAGGCAGGACGTCGATTCCTTCTCTGTAGAGCGCCGGAGGCCTTCGCCGGGCCCTTGCCAGAGGAATGAGCAAGGTTGGCCGTCGTGGCTGCTGGCTGTCGCCGGCGAGGTGATTCAAGGCTGGACGCCTCGTCGAGCCAATACATTTGAGAAGCTTGCTAAGATAGGGCAAGGGACGTATAGCAATGTGTACAAGGCGAGGGATCTTATTACTGGGAAAATTGTTGCTCTAAAGAAGGTTAGGTTTGATAATTTAGAACCGGAGAGCGTAAGATTTATGGCCAGAGAGATTTTGGTTCTCAAACGCCTCGATCATCCCAATGTGCTTAAGCTGGAAGGCTTAGTTACTTCGAGAATGTCGTGTAGTCTTTACTTAGTTTTCGAGTATATGGAACACGACCTCGCCGGACTTGCTGCCGGTCAAGGAGTCAAGTTCACGGAGCCTCAGGTCAAATGCTATATGAAGCAACTATTGTCCGGGCTTGAGCACTGTCACAATCGAGGTGTTTTGCATCGTGATATAAAGGGTTCCAATTTGCTAATTGATAACGAAGGAATATTGAAAATAGCTGATTTTGGGTTAGCTACCTTTTTTGATCCTGAGCAGAGTCAGCATATGACTAGTCGAGTAGTAACTCTTTGGTACCGTCCACCTGAACTATTGCTTGGAGCTACTCTTTATGGTATAGGGATTGATCTCTGGAGTGCTGGCTGCATCTTGGCCGAGCTGCTCGCTGGGAGGCCAATCATGCCAGGAAGGACAGAGGTTGAACAACTCCATAAGATATTTAAATTATGTGGTTCTCCAACTGAGGATTACTGGAAGAAATACAAATTGCCGAATGCAACTCTTTTTAAACCCCAACAACCGTACAAACGCTGCATTGCAGAAACGTTCAAGGATTTTCCATCTTCTTCTCTACCTCTTATTGAATCTCTCCTTTCAATGGACCCCGATGGGCGAGGTACTGCCACTGCTGCTCTGAATAGCGAATTCTTTGCTACCGAACCTCTTGCTTGTGAACCATCAAGTTTACCTAAATATCCTCCTAGCAAAGAATTGGATGTAAAGTTGAGGGATGAGGAAGCTAGAAGGCAAAGAGGTCTAAATGGGAAAGCTACAGCTATCGATGGTGGAGGCAGGAGAGTAAGAGTACGGGATCGGGTTAGTCGGGCTGTCCCGGCTCCTGAAGCTAATGCAGAGATACAAGCAAACTTAGATAGGTGGAGAAATGTGACAAAAGCAAATGCTAAGAGCAAGAGCGAGAAGTTTCCCCCACCTCATCAAGATGGGGCAGTGGGGTACCCGCCACATGAGACATCCCAGAGGGGCCATTTATCATTTGGCGCAGCTGATACTTCATTCAGCTCCTCCATTTTTAATTCTAAGTCTGGATCAGTTAAAAGTACAGGAGCTCCTGGAGGACCTTCTCGGAGGAAGAAAGCCGATAGAGATAACCCCTCGGTATCTTCATCTCGTAAATTCATCCGTGCGCTGAAGCCATCAATCGGGTTATCAATGGATCTATTGTTTAGAGGTAAATAA 1701 48.21 MGCVLGRQPADAPRSASGPPRRRRSTDHHSRLDGLNGQRLNKQTTSAEKQGLRQDVDSFSVERRRPSPGPCQRNEQGWPSWLLAVAGEVIQGWTPRRANTFEKLAKIGQGTYSNVYKARDLITGKIVALKKVRFDNLEPESVRFMAREILVLKRLDHPNVLKLEGLVTSRMSCSLYLVFEYMEHDLAGLAAGQGVKFTEPQVKCYMKQLLSGLEHCHNRGVLHRDIKGSNLLIDNEGILKIADFGLATFFDPEQSQHMTSRVVTLWYRPPELLLGATLYGIGIDLWSAGCILAELLAGRPIMPGRTEVEQLHKIFKLCGSPTEDYWKKYKLPNATLFKPQQPYKRCIAETFKDFPSSSLPLIESLLSMDPDGRGTATAALNSEFFATEPLACEPSSLPKYPPSKELDVKLRDEEARRQRGLNGKATAIDGGGRRVRVRDRVSRAVPAPEANAEIQANLDRWRNVTKANAKSKSEKFPPPHQDGAVGYPPHETSQRGHLSFGAADTSFSSSIFNSKSGSVKSTGAPGGPSRRKKADRDNPSVSSSRKFIRALKPSIGLSMDLLFRGK 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4651684 4655225 - Lag0024651.1 Lac10g0606 583137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0606 566 MobiDBLite consensus disorder prediction 17 35 - -
Lac10g0606 566 FunFam probable serine/threonine-protein kinase At1g54610 184 425 - -
Lac10g0606 566 MobiDBLite consensus disorder prediction 511 546 - -
Lac10g0606 566 ProSitePatterns Protein kinases ATP-binding region signature. 107 130 IPR017441 GO:0005524(InterPro)
Lac10g0606 566 ProSitePatterns Serine/Threonine protein kinases active-site signature. 221 233 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g0606 566 MobiDBLite consensus disorder prediction 466 497 - -
Lac10g0606 566 PANTHER CELL DIVISION PROTEIN KINASE 100 385 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Lac10g0606 566 MobiDBLite consensus disorder prediction 36 53 - -
Lac10g0606 566 FunFam probable serine/threonine-protein kinase At1g54610 88 183 - -
Lac10g0606 566 ProSiteProfiles Protein kinase domain profile. 101 385 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0606 566 CDD STKc_CDK9_like 101 385 - -
Lac10g0606 566 MobiDBLite consensus disorder prediction 415 434 - -
Lac10g0606 566 Gene3D Phosphorylase Kinase; domain 1 88 183 - -
Lac10g0606 566 SUPERFAMILY Protein kinase-like (PK-like) 94 389 IPR011009 -
Lac10g0606 566 MobiDBLite consensus disorder prediction 1 75 - -
Lac10g0606 566 Gene3D Transferase(Phosphotransferase) domain 1 184 424 - -
Lac10g0606 566 SMART serkin_6 101 385 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0606 566 Pfam Protein kinase domain 101 385 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0606 Lac-Chr10:4651684 Lac7g0838 Lac-Chr7:6765851 2.00E-199 dispersed
Lac10g0606 Lac-Chr10:4651684 Lac3g2293 Lac-Chr3:31237655 5.00E-190 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85634 PF00069 Pkinase 8.10E-67 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0606 K08819 - csv:101205716 1001.12