Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac10g0610 | ATGACCAATTGCTTCTCTCAATTCTTCCCTCAAGAACAACAACAACAACAACAGCCCATTCATCATTTTCCCGAGCTCTCTAAACAGAGCCCAGAATCTTCCACTTTGGTCGACAAATCCGACAGCGGCGAGCCGCCGGTCGGAAATCAGTCGAAGCCGGCCGTTACTGTAACGGTAACTTCCCCTTGTAAGAAAAGAAAGAGCCGGAATAACTCCTCCGCCAGCTCCGCCCAGTCTAAGGGTACTACTGAGAGCAGTGGGAAGAAGCAGAAAAACAAAGGGGAATTAGATGAACGGAAAGAAGATCAAAAGGCGAAAACTGGGAAGAAATTAGAGGAGAAAAAAGTTTCAGAAGAAGGTGGTGCAACGACAGGTTACATTCATGTCAGAGCCAGGAGGGGCCAAGCCACAGATAGCCACAGTCTTGCAGAGAGGGTGAGAAGAGAGAAGATTAGTGAAAGGATGAAGACATTGCAACGACTTGTTCCCGGTTGCGACAAGGTTACAGGGAAGGCCCTGATGTTGGATGAAATTATTAATTATGTTCAGTCCCTACAAAATCAAGTTGAGTTTCTCTCCATGAAACTCGCTTCTTTGAACCCAATTTTCTTCGACTTCAGAATGGACTTGGACGGCCTCATGATCCAACCAGAGACGACGTCGTTGAGTAGTATAACGCCGCAACTACCGGCGATGGCGCAATGCAACGTGGTGCCGCCGCCGGCGTTGATCGATACGACCACTCCGACGACCCCAACAATCGCCGCCGCAAATAACTATCCTCTAATGGACCATTCAGCTAATTTGTTTCTACTTCAACAAGGGATGAGCCCAAATAACGCGTACTCTCAGTCGTCGTCTCAGGATAACGTTAAAGTTTCATCATGGGATGTCGAAGACCAGAAACGAAAGCTTCTTATTTCATCAGGAATTGGCGACAACTTGTGTTACTTCCATTAA | 960 | 47.19 | MTNCFSQFFPQEQQQQQQPIHHFPELSKQSPESSTLVDKSDSGEPPVGNQSKPAVTVTVTSPCKKRKSRNNSSASSAQSKGTTESSGKKQKNKGELDERKEDQKAKTGKKLEEKKVSEEGGATTGYIHVRARRGQATDSHSLAERVRREKISERMKTLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASLNPIFFDFRMDLDGLMIQPETTSLSSITPQLPAMAQCNVVPPPALIDTTTPTTPTIAAANNYPLMDHSANLFLLQQGMSPNNAYSQSSSQDNVKVSSWDVEDQKRKLLISSGIGDNLCYFH | 319 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 4683919 | 4685543 | - | Lag0024655.1 | Lac10g0610 | 583141 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac10g0610 | 319 | MobiDBLite | consensus disorder prediction | 1 | 85 | - | - | |
Lac10g0610 | 319 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 135 | 185 | IPR011598 | GO:0046983(InterPro) | |
Lac10g0610 | 319 | MobiDBLite | consensus disorder prediction | 1 | 122 | - | - | |
Lac10g0610 | 319 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 133 | 201 | IPR036638 | GO:0046983(InterPro) | |
Lac10g0610 | 319 | MobiDBLite | consensus disorder prediction | 86 | 119 | - | - | |
Lac10g0610 | 319 | Gene3D | - | 132 | 202 | IPR036638 | GO:0046983(InterPro) | |
Lac10g0610 | 319 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 26 | 289 | IPR024097 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro) | |
Lac10g0610 | 319 | CDD | bHLH_AtBPE_like | 125 | 210 | - | - | |
Lac10g0610 | 319 | FunFam | Basic helix-loop-helix transcription factor | 132 | 204 | - | - | |
Lac10g0610 | 319 | SMART | finulus | 141 | 191 | IPR011598 | GO:0046983(InterPro) | |
Lac10g0610 | 319 | Pfam | Helix-loop-helix DNA-binding domain | 139 | 186 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac10g0610 | Lac-Chr10:4683919 | Lac4g1936 | Lac-Chr4:38823496 | 1.10E-34 | dispersed | |
Lac10g0610 | Lac-Chr10:4683919 | Lac3g0035 | Lac-Chr3:309364 | 1.20E-36 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
22738 | PF00010 | HLH | 5.90E-07 | No_clan | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac10g0610 | - | - | - | 0.0 |