Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0610 ATGACCAATTGCTTCTCTCAATTCTTCCCTCAAGAACAACAACAACAACAACAGCCCATTCATCATTTTCCCGAGCTCTCTAAACAGAGCCCAGAATCTTCCACTTTGGTCGACAAATCCGACAGCGGCGAGCCGCCGGTCGGAAATCAGTCGAAGCCGGCCGTTACTGTAACGGTAACTTCCCCTTGTAAGAAAAGAAAGAGCCGGAATAACTCCTCCGCCAGCTCCGCCCAGTCTAAGGGTACTACTGAGAGCAGTGGGAAGAAGCAGAAAAACAAAGGGGAATTAGATGAACGGAAAGAAGATCAAAAGGCGAAAACTGGGAAGAAATTAGAGGAGAAAAAAGTTTCAGAAGAAGGTGGTGCAACGACAGGTTACATTCATGTCAGAGCCAGGAGGGGCCAAGCCACAGATAGCCACAGTCTTGCAGAGAGGGTGAGAAGAGAGAAGATTAGTGAAAGGATGAAGACATTGCAACGACTTGTTCCCGGTTGCGACAAGGTTACAGGGAAGGCCCTGATGTTGGATGAAATTATTAATTATGTTCAGTCCCTACAAAATCAAGTTGAGTTTCTCTCCATGAAACTCGCTTCTTTGAACCCAATTTTCTTCGACTTCAGAATGGACTTGGACGGCCTCATGATCCAACCAGAGACGACGTCGTTGAGTAGTATAACGCCGCAACTACCGGCGATGGCGCAATGCAACGTGGTGCCGCCGCCGGCGTTGATCGATACGACCACTCCGACGACCCCAACAATCGCCGCCGCAAATAACTATCCTCTAATGGACCATTCAGCTAATTTGTTTCTACTTCAACAAGGGATGAGCCCAAATAACGCGTACTCTCAGTCGTCGTCTCAGGATAACGTTAAAGTTTCATCATGGGATGTCGAAGACCAGAAACGAAAGCTTCTTATTTCATCAGGAATTGGCGACAACTTGTGTTACTTCCATTAA 960 47.19 MTNCFSQFFPQEQQQQQQPIHHFPELSKQSPESSTLVDKSDSGEPPVGNQSKPAVTVTVTSPCKKRKSRNNSSASSAQSKGTTESSGKKQKNKGELDERKEDQKAKTGKKLEEKKVSEEGGATTGYIHVRARRGQATDSHSLAERVRREKISERMKTLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASLNPIFFDFRMDLDGLMIQPETTSLSSITPQLPAMAQCNVVPPPALIDTTTPTTPTIAAANNYPLMDHSANLFLLQQGMSPNNAYSQSSSQDNVKVSSWDVEDQKRKLLISSGIGDNLCYFH 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4683919 4685543 - Lag0024655.1 Lac10g0610 583141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0610 319 MobiDBLite consensus disorder prediction 1 85 - -
Lac10g0610 319 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 135 185 IPR011598 GO:0046983(InterPro)
Lac10g0610 319 MobiDBLite consensus disorder prediction 1 122 - -
Lac10g0610 319 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 133 201 IPR036638 GO:0046983(InterPro)
Lac10g0610 319 MobiDBLite consensus disorder prediction 86 119 - -
Lac10g0610 319 Gene3D - 132 202 IPR036638 GO:0046983(InterPro)
Lac10g0610 319 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 26 289 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Lac10g0610 319 CDD bHLH_AtBPE_like 125 210 - -
Lac10g0610 319 FunFam Basic helix-loop-helix transcription factor 132 204 - -
Lac10g0610 319 SMART finulus 141 191 IPR011598 GO:0046983(InterPro)
Lac10g0610 319 Pfam Helix-loop-helix DNA-binding domain 139 186 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0610 Lac-Chr10:4683919 Lac4g1936 Lac-Chr4:38823496 1.10E-34 dispersed
Lac10g0610 Lac-Chr10:4683919 Lac3g0035 Lac-Chr3:309364 1.20E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22738 PF00010 HLH 5.90E-07 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0610 - - - 0.0