Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0613 ATGCTTTCCAGAGTTGGGAACGTCGTTTGGATGGAGAATCGCGAGGATGAAGACTCTGCTTCTTGGACTAAAAACAACAGCGACACCCATCTCAACCACCCTGCTAATTGCTCTGTTTTGGAGAACAAGGACGAAATGAGCTCTCTCTCTACCTTCAAATCCATGCTCGAGGTTGAAGACGACTGGTGCATCACTGGTAATGCCCTCCATAACCATAACGATATCAATGACATTACATTCTCTCAGAATTTCACCGACCCACCTGACAATTTGTTGCTTCCTCCTGGAGATTCGTCCTCTTCTTGTTCCCCTTCTTCCTCTGTGTTCAATAACATTGACCCATCTCAATTGCGGTTCTTTTTACCCCCAACTCGTACTCTGTCCTCACTTCACAAGGTCATTGGTAATAACCCTTTAGAGCATGGCTTCGATTTGGGGGCAGAGGTTGGGTTTCTTGACGTCCAAGCTTCAAATGCTTCGACTCTGCTCAACAGTGGAGGTGGATTGTTAACTGGGTTCACTGATTTAAGCCCAACTAGCCAGATGAACACTCCTAATTTGTGCTTAGGCTCTCAATTGACAACCCACAACGTGCCCCAAATGGCTGAAAATTGTTCGGTTCTAGCGGGATTTCAGAATTTCGATGAGAATTTGGGAAATGCTCTGCTTCTGAATCGGTCTAAGCTTCTGAGACCACTTGAATCCTTTCCCTCAGTGGGAGCTCAGCCGACTCTTTTTCAGAAGAGGGCAGCTCTTAGGAAAAGCTTAGCTGATAAGGGAAGCAATTTGGGGGTTTTGAGCCCCGATGGCGGCTGGTTTTCAAACAGGATTGAAGGGGGCGTTGGAAAAAATGAAGTGGGTGATGAAAATGGTAAGAAGAGGAAAATGATTTATGCAGATGAGTTGCAAGATACTAGCATCGACACATCCCGTTTCAATTACGATTCTGATGACTTCACTGAGAATAATAACACTAAGATGGATGAGAGTGGTAGAAATGTTGGAAATACTTCTAACGGTAATAGTACGGTGACTGGCGGCGACCAGAAGGGGAAGAAGAAAGGACTCCCGGCAAAGAATTTGATGGCTGAGAGGCGCCGGAGGAAGAAGCTCAATGATAGACTCTACATGCTGAGGTCCGTTGTGCCCAAAATCAGCAAAATGGATAGGGCTTCAATTCTTGGGGATGCAATTGAGTACTTGAAGGAACTACTGCAAAGAATCAATGACCTCCATAATGAGTTGGAGTTTACCCCTTCTGGGACAGCTTTGACGCCGAGCGCAAGCTTTCACCCTCTGACTCCAACTCCGCCGAGCCTCTCGAGTCGTATAAAGGAGGAGCTTTGTCCTAGCTCATTTCCCAGCCCTAATGGCCAACCAGCAAGGGTTGAAGTTAGGGTACGTGAAGGACGGGCGGTGAATATACACATGTTCTGTGGTCGTCGACCTGGTCTCTTGCTCTCCACAGTTAGGGCATTAGATAATCTTGGATTAGACATCCAGCAAGCTGTGATTAGCTGCTTTAATGGTTTTGCCATGGATATTTTCCGAGCAGAGCAATGCAGCGAAGGCCAGGATGTCCATCCTGAGCAGATAAAAGCAATACTATTGGATTCAGTTGGCTTCAATGGTGCTACATAG 1641 46.44 MLSRVGNVVWMENREDEDSASWTKNNSDTHLNHPANCSVLENKDEMSSLSTFKSMLEVEDDWCITGNALHNHNDINDITFSQNFTDPPDNLLLPPGDSSSSCSPSSSVFNNIDPSQLRFFLPPTRTLSSLHKVIGNNPLEHGFDLGAEVGFLDVQASNASTLLNSGGGLLTGFTDLSPTSQMNTPNLCLGSQLTTHNVPQMAENCSVLAGFQNFDENLGNALLLNRSKLLRPLESFPSVGAQPTLFQKRAALRKSLADKGSNLGVLSPDGGWFSNRIEGGVGKNEVGDENGKKRKMIYADELQDTSIDTSRFNYDSDDFTENNNTKMDESGRNVGNTSNGNSTVTGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELEFTPSGTALTPSASFHPLTPTPPSLSSRIKEELCPSSFPSPNGQPARVEVRVREGRAVNIHMFCGRRPGLLLSTVRALDNLGLDIQQAVISCFNGFAMDIFRAEQCSEGQDVHPEQIKAILLDSVGFNGAT 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4711912 4714912 + Lag0024658.1 Lac10g0613 583144

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0613 546 CDD bHLH_AtAMS_like 358 421 - -
Lac10g0613 546 FunFam BHLH transcription factor 351 419 - -
Lac10g0613 546 Gene3D - 349 418 IPR036638 GO:0046983(InterPro)
Lac10g0613 546 CDD ACT_UUR-ACR-like 475 535 - -
Lac10g0613 546 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 355 404 IPR011598 GO:0046983(InterPro)
Lac10g0613 546 MobiDBLite consensus disorder prediction 423 443 - -
Lac10g0613 546 MobiDBLite consensus disorder prediction 313 357 - -
Lac10g0613 546 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 358 423 IPR036638 GO:0046983(InterPro)
Lac10g0613 546 Pfam Helix-loop-helix DNA-binding domain 362 404 IPR011598 GO:0046983(InterPro)
Lac10g0613 546 MobiDBLite consensus disorder prediction 313 348 - -
Lac10g0613 546 Coils Coil 394 414 - -
Lac10g0613 546 SMART finulus 361 410 IPR011598 GO:0046983(InterPro)
Lac10g0613 546 Pfam Plant bHLH transcription factor, ACT-like domain 463 535 IPR054502 -
Lac10g0613 546 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 312 541 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Lac10g0613 546 MobiDBLite consensus disorder prediction 14 34 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0613 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0613 Lac-Chr10:4711912 Lac8g0052 Lac-Chr8:843746 7.50E-135 dispersed
Lac10g0613 Lac-Chr10:4711912 Lac2g0808 Lac-Chr2:6378004 8.80E-35 transposed
Lac10g0613 Lac-Chr10:4711912 Lac6g1040 Lac-Chr6:9489029 8.80E-35 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g28 . Blo16g00289 . . . . Bma06g00283 . . Cmo18g00238 . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00527 Csa01g00990 Chy12g01144 Cme12g01562 . . Bda11g01575 . . . . . Sed08g2407 . . . Cma18g00292 Car13g00673 Car18g00249 Cpe09g00942 . Bhi08g01538 Tan05g3011 Cmetu06g0036 Lac10g0613 Hepe07g2082 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011005 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22739 PF00010 HLH 2.10E-09 No_clan Lac TF