Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0630 ATGCCGCCGCCACCACTCTCTGCCACCGTTGTCGCCGCCCCTTTAAGAGAAGATCGTAATCAGATGGAGAAAACTCGCTGGATTCAAGGGAAAAATGGAAGTCTGGAGAAGGTCGAATCTCGCTGGATTTTCAAGGGAAAAATGGGAAGTTTGGAGAAGGGATCTGAAGGGGAGATTAATCAAGGTAATGGCTCCGACAGAGGTGAAACCGCTTTATCTGCAATTTCTTCCGCTTCTGATGTTAATTTGGATGTCCAGATTAGGCGGCTCGGACACTTGCCCTGTTTTGGGAAATTATGTCATCAAGTTTCCTTTGGCTGTGTAGATGTTCAACGAGTCAGACGGTGCCCCCATGGTTGGTTTATCAGCCCGAACAAGACCAAGTGCTATGGTTTCATGTTGAGCCCTCAATCATGGAATGAATCAGAGACCAAATGTAATGGTTTTGGTGGAAACTTAGCAGCACTGATAACATATCAAGAGTTTAGCTTTGCACAAAATCTGTGTAATGGAACTCTTGGTGGCTGTTGGGTTGGAGGAAGAGTGTTCAACTCTTCGAATGATTTTGTATGGAAGTGGTCAGATAATGTTTCAAAATGGAATGATTCCATTATTCCCAGCACAGCACTGCAATCTAATTGCAAAAACGTCTCTTGCCGCATGAATGATGTGGTTGAAACGTGTACTTTGATATTTGGTGGACCAGCCACACCGTTCCTTAAAGATGAGAAATGCAACAGCTCTCACCCTTTCATATGCATGATAAATCTAGATGATAGATGCCATCGCATGCACTGCCACAAGGAGTATCTAGTCATTCTAGCAGTTGTGAGTGGGTTGATATTTTGCACAACGTTAGCTGTGGTGATTTGGCTTCTTGCCTACAAGAGGAGCAGAAAGCGGAGAAGGTCTCGGAAGCCATCCAATCCTGCAGCTTCTGCACTGGTACCCCCTTCATGGAAGGTGTTTACCAAAGAAGAGCTAAGATCGATTACGAAAAACTTCAGTGAGGGGAACCGTCTTCTTGGAGACACAAAAACAGGTGGTACATATAGTGGACTTTTACCTGATGGTTCAAGAGTTGCAATTAAAAGGTTAAAGAAGTCCAGCTTTCAGAGGAAAAAAGAGTTCCATTCTGAAATTGCAAGAGTTGCTAGACTTCGTCATCCAAATTTGGTTGCCCTGAAAGGATGCTGCTATGACCACGGTGACCGCTACATTGTTTATGAATTCATCGTTAATGGGCCCTTAGATAGATGGCTTCACCATGTTCCGAGAGGTGGTCGAAGCTTAGATTGGACCATGAGAATGAAAATTGCCACGACTCTTGCCCAAGGGATTGCGTTTCTTCATGACAAGGTTAAGCCACACGTGGTACATCGTGATATCCGTGCCAGTAATGTACTTCTTGATGAAGAATTTGGCGCACATCTGATGGGAGTTGGCCTGTCAAAATTGGTGGCATATGAAGTGATGCACGAGAGGACAGTGATGGCAGGGGGAACCTATGGATACCTTGCTCCTGAATTTGTCTACAGAAACGAGCTAACAACAAAGAGCGATGTCTATAGTTTCGGGGTGCTGTTGCTTGAAATCGTGACTGGCCGAAGGCCCGCACAGGCAGTTGATTCTGTTGGTTGGCAGAGCATTTTTGAATGGGCAACGCCCCTCGTTCAGGCTCACCGTTACCTAGATCTCTTGGATCCTCATATAACGGCTACTTCTACTTCTGAAATTCCAGAGGCTGGTGTTGTTCAGAAGGTGGTGGACCTTGTGTATGCTTGCACGCAGCATGTCCCATCCATGCGCCCTAGAATGTCGCATGTTGTCCATCAGTTGCAACAATTGGCACCCTCACCTTTCACTATGAAGTAA 1875 45.6 MPPPPLSATVVAAPLREDRNQMEKTRWIQGKNGSLEKVESRWIFKGKMGSLEKGSEGEINQGNGSDRGETALSAISSASDVNLDVQIRRLGHLPCFGKLCHQVSFGCVDVQRVRRCPHGWFISPNKTKCYGFMLSPQSWNESETKCNGFGGNLAALITYQEFSFAQNLCNGTLGGCWVGGRVFNSSNDFVWKWSDNVSKWNDSIIPSTALQSNCKNVSCRMNDVVETCTLIFGGPATPFLKDEKCNSSHPFICMINLDDRCHRMHCHKEYLVILAVVSGLIFCTTLAVVIWLLAYKRSRKRRRSRKPSNPAASALVPPSWKVFTKEELRSITKNFSEGNRLLGDTKTGGTYSGLLPDGSRVAIKRLKKSSFQRKKEFHSEIARVARLRHPNLVALKGCCYDHGDRYIVYEFIVNGPLDRWLHHVPRGGRSLDWTMRMKIATTLAQGIAFLHDKVKPHVVHRDIRASNVLLDEEFGAHLMGVGLSKLVAYEVMHERTVMAGGTYGYLAPEFVYRNELTTKSDVYSFGVLLLEIVTGRRPAQAVDSVGWQSIFEWATPLVQAHRYLDLLDPHITATSTSEIPEAGVVQKVVDLVYACTQHVPSMRPRMSHVVHQLQQLAPSPFTMK 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4845071 4851193 + Lag0024675.1 Lac10g0630 583161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0630 624 SUPERFAMILY C-type lectin-like 116 255 IPR016187 -
Lac10g0630 624 SUPERFAMILY Protein kinase-like (PK-like) 309 613 IPR011009 -
Lac10g0630 624 FunFam C-type lectin receptor-like tyrosine-protein kinase At1g52310 412 624 - -
Lac10g0630 624 SMART CLECT_2 116 254 IPR001304 -
Lac10g0630 624 Pfam Lectin C-type domain 136 254 IPR001304 -
Lac10g0630 624 ProSiteProfiles C-type lectin domain profile. 125 254 IPR001304 -
Lac10g0630 624 ProSiteProfiles Protein kinase domain profile. 336 622 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0630 624 SMART tyrkin_6 339 613 IPR020635 GO:0004713(InterPro)|GO:0006468(InterPro)
Lac10g0630 624 PANTHER OS01G0750732 PROTEIN 220 616 IPR050885 -
Lac10g0630 624 ProSitePatterns Tyrosine protein kinases specific active-site signature. 458 470 IPR008266 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g0630 624 Gene3D Phosphorylase Kinase; domain 1 313 411 - -
Lac10g0630 624 Gene3D - 106 257 IPR016186 -
Lac10g0630 624 Gene3D Transferase(Phosphotransferase) domain 1 412 618 - -
Lac10g0630 624 FunFam C-type lectin receptor-like tyrosine-protein kinase 313 411 - -
Lac10g0630 624 Pfam Protein tyrosine and serine/threonine kinase 341 613 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0630 Lac-Chr10:4845071 Lac13g0438 Lac-Chr13:3095235 2.70E-56 dispersed
Lac10g0630 Lac-Chr10:4845071 Lac12g0877 Lac-Chr12:9089906 4.10E-52 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85636 PF07714 PK_Tyr_Ser-Thr 5.80E-40 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0630 - - - 0.0