Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0659 ATGGCTTCCACATCATCCCACCTTCTAACTCTTCTCATCATTCTCTCATTCATCAATCCATCCCTTCAAGATTACTACACTCCAGCCAAGACCAACATGAACGTAATCGACTCATGCTGGCGGACGAGGTCCAATTGGGCCAACAACCGCCGTGCCTTGGCGGACTGCGCAGTGGGCTTCGGCAAGGACGCAATCGGAGGGAAATTTGGTACAATTTACGTCGTCACTGACCCATCCGACAACCCTTCAAACCCCAAATTTGGAACTCTACGTTACGGTGTGATTCAAAACAAGCCACTGTGGATTGTGTTCGCCAAGGACATGGTTATTGTGCTGAAGAATGAGCTGATGGTAAACAGTTTCAAGACCATTGATGGGCGTGGGGCTAAAGTGGAAATCGCTTATGGGCCTTGCATTACGGTGCAGGGAGTGAGCCATGTTATTATTCATGGGATTAGTATTCATGACTGTAAGCCTGGCAAAGCTGGGCTTGTTAGAGACACTGTCACGCATGTCGGCAAACGGCATGGCTCTGATGGCGATGCCATTGCTATATTTGCTTCTTCTTATATTTGGGTTGATCATTGCTTTTTAGCTCGATCTACTGATGGTCTTATTGATATCATTCATGCTTCCACTGCTGTTACTATCTCCAATAACTACTTCTCCCAACATGATAAAGTGATGCTGCTTGGGCATAATGATGGGTTCACTGATGATAAAATTATGAGGGTTACCATCGTCTTCAATCGCTTCGGTGCTGGCCTCATCGAGAGGATGCCCAGGGTTAGGTTTGGTTATGCCCATGTAGCCAACAATAGATACGATGAGTGGCAAATGTATGCCATTGGTGGAAGTGCAAACCCAACAATCTTCAGTGAAGGAAACTACTTTGTAGCTCCCCAAAATTCCAATGCCAAGCAGGTTACAAAAAGGGAGGTTAATAATGGGTGGAAGAACTGGAAATGGAGGTCGTCGAGAGATGTGTTCATAAATGGTGCTTATTTTGTGCAATCTGGATGGGGAAGTTGCAGCCCAATTTACACAAGGGCTCAGTCTTTTCCAGTGGCTCCAGGCTCCAAGGTTCCAGCTTTGACTGCAAATGCAGGCCCTCTTCGTTGTTTTATTGGCAAACCTTGCTGA 1143 46.28 MASTSSHLLTLLIILSFINPSLQDYYTPAKTNMNVIDSCWRTRSNWANNRRALADCAVGFGKDAIGGKFGTIYVVTDPSDNPSNPKFGTLRYGVIQNKPLWIVFAKDMVIVLKNELMVNSFKTIDGRGAKVEIAYGPCITVQGVSHVIIHGISIHDCKPGKAGLVRDTVTHVGKRHGSDGDAIAIFASSYIWVDHCFLARSTDGLIDIIHASTAVTISNNYFSQHDKVMLLGHNDGFTDDKIMRVTIVFNRFGAGLIERMPRVRFGYAHVANNRYDEWQMYAIGGSANPTIFSEGNYFVAPQNSNAKQVTKREVNNGWKNWKWRSSRDVFINGAYFVQSGWGSCSPIYTRAQSFPVAPGSKVPALTANAGPLRCFIGKPC 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5127099 5128881 + Lag0024704.1 Lac10g0659 583190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0659 380 PRINTS Pollen allergen Amb family signature 351 374 IPR018082 -
Lac10g0659 380 PRINTS Pollen allergen Amb family signature 259 278 IPR018082 -
Lac10g0659 380 PRINTS Pollen allergen Amb family signature 115 131 IPR018082 -
Lac10g0659 380 PRINTS Pollen allergen Amb family signature 79 104 IPR018082 -
Lac10g0659 380 PRINTS Pollen allergen Amb family signature 179 200 IPR018082 -
Lac10g0659 380 PRINTS Pollen allergen Amb family signature 321 345 IPR018082 -
Lac10g0659 380 PRINTS Pollen allergen Amb family signature 281 300 IPR018082 -
Lac10g0659 380 PRINTS Pollen allergen Amb family signature 56 73 IPR018082 -
Lac10g0659 380 SMART amb_all 107 304 IPR002022 -
Lac10g0659 380 Gene3D - 33 373 IPR012334 -
Lac10g0659 380 SUPERFAMILY Pectin lyase-like 33 371 IPR011050 -
Lac10g0659 380 PANTHER PECTATE LYASE 18-RELATED 14 375 IPR045032 GO:0030570(InterPro)
Lac10g0659 380 Pfam Pectate lyase 113 298 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0659 Lac-Chr10:5127099 Lac6g0705 Lac-Chr6:5993368 4.30E-121 dispersed
Lac10g0041 Lac-Chr10:448466 Lac10g0659 Lac-Chr10:5127099 5.50E-84 transposed
Lac1g3191 Lac-Chr1:52006376 Lac10g0659 Lac-Chr10:5127099 1.70E-162 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0659 K01728 - csv:101211379 716.457