Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac10g0659 | ATGGCTTCCACATCATCCCACCTTCTAACTCTTCTCATCATTCTCTCATTCATCAATCCATCCCTTCAAGATTACTACACTCCAGCCAAGACCAACATGAACGTAATCGACTCATGCTGGCGGACGAGGTCCAATTGGGCCAACAACCGCCGTGCCTTGGCGGACTGCGCAGTGGGCTTCGGCAAGGACGCAATCGGAGGGAAATTTGGTACAATTTACGTCGTCACTGACCCATCCGACAACCCTTCAAACCCCAAATTTGGAACTCTACGTTACGGTGTGATTCAAAACAAGCCACTGTGGATTGTGTTCGCCAAGGACATGGTTATTGTGCTGAAGAATGAGCTGATGGTAAACAGTTTCAAGACCATTGATGGGCGTGGGGCTAAAGTGGAAATCGCTTATGGGCCTTGCATTACGGTGCAGGGAGTGAGCCATGTTATTATTCATGGGATTAGTATTCATGACTGTAAGCCTGGCAAAGCTGGGCTTGTTAGAGACACTGTCACGCATGTCGGCAAACGGCATGGCTCTGATGGCGATGCCATTGCTATATTTGCTTCTTCTTATATTTGGGTTGATCATTGCTTTTTAGCTCGATCTACTGATGGTCTTATTGATATCATTCATGCTTCCACTGCTGTTACTATCTCCAATAACTACTTCTCCCAACATGATAAAGTGATGCTGCTTGGGCATAATGATGGGTTCACTGATGATAAAATTATGAGGGTTACCATCGTCTTCAATCGCTTCGGTGCTGGCCTCATCGAGAGGATGCCCAGGGTTAGGTTTGGTTATGCCCATGTAGCCAACAATAGATACGATGAGTGGCAAATGTATGCCATTGGTGGAAGTGCAAACCCAACAATCTTCAGTGAAGGAAACTACTTTGTAGCTCCCCAAAATTCCAATGCCAAGCAGGTTACAAAAAGGGAGGTTAATAATGGGTGGAAGAACTGGAAATGGAGGTCGTCGAGAGATGTGTTCATAAATGGTGCTTATTTTGTGCAATCTGGATGGGGAAGTTGCAGCCCAATTTACACAAGGGCTCAGTCTTTTCCAGTGGCTCCAGGCTCCAAGGTTCCAGCTTTGACTGCAAATGCAGGCCCTCTTCGTTGTTTTATTGGCAAACCTTGCTGA | 1143 | 46.28 | MASTSSHLLTLLIILSFINPSLQDYYTPAKTNMNVIDSCWRTRSNWANNRRALADCAVGFGKDAIGGKFGTIYVVTDPSDNPSNPKFGTLRYGVIQNKPLWIVFAKDMVIVLKNELMVNSFKTIDGRGAKVEIAYGPCITVQGVSHVIIHGISIHDCKPGKAGLVRDTVTHVGKRHGSDGDAIAIFASSYIWVDHCFLARSTDGLIDIIHASTAVTISNNYFSQHDKVMLLGHNDGFTDDKIMRVTIVFNRFGAGLIERMPRVRFGYAHVANNRYDEWQMYAIGGSANPTIFSEGNYFVAPQNSNAKQVTKREVNNGWKNWKWRSSRDVFINGAYFVQSGWGSCSPIYTRAQSFPVAPGSKVPALTANAGPLRCFIGKPC | 380 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 5127099 | 5128881 | + | Lag0024704.1 | Lac10g0659 | 583190 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac10g0659 | 380 | PRINTS | Pollen allergen Amb family signature | 351 | 374 | IPR018082 | - | |
Lac10g0659 | 380 | PRINTS | Pollen allergen Amb family signature | 259 | 278 | IPR018082 | - | |
Lac10g0659 | 380 | PRINTS | Pollen allergen Amb family signature | 115 | 131 | IPR018082 | - | |
Lac10g0659 | 380 | PRINTS | Pollen allergen Amb family signature | 79 | 104 | IPR018082 | - | |
Lac10g0659 | 380 | PRINTS | Pollen allergen Amb family signature | 179 | 200 | IPR018082 | - | |
Lac10g0659 | 380 | PRINTS | Pollen allergen Amb family signature | 321 | 345 | IPR018082 | - | |
Lac10g0659 | 380 | PRINTS | Pollen allergen Amb family signature | 281 | 300 | IPR018082 | - | |
Lac10g0659 | 380 | PRINTS | Pollen allergen Amb family signature | 56 | 73 | IPR018082 | - | |
Lac10g0659 | 380 | SMART | amb_all | 107 | 304 | IPR002022 | - | |
Lac10g0659 | 380 | Gene3D | - | 33 | 373 | IPR012334 | - | |
Lac10g0659 | 380 | SUPERFAMILY | Pectin lyase-like | 33 | 371 | IPR011050 | - | |
Lac10g0659 | 380 | PANTHER | PECTATE LYASE 18-RELATED | 14 | 375 | IPR045032 | GO:0030570(InterPro) | |
Lac10g0659 | 380 | Pfam | Pectate lyase | 113 | 298 | IPR002022 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac10g0659 | Lac-Chr10:5127099 | Lac6g0705 | Lac-Chr6:5993368 | 4.30E-121 | dispersed | |
Lac10g0041 | Lac-Chr10:448466 | Lac10g0659 | Lac-Chr10:5127099 | 5.50E-84 | transposed | |
Lac1g3191 | Lac-Chr1:52006376 | Lac10g0659 | Lac-Chr10:5127099 | 1.70E-162 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac10g0659 | K01728 | - | csv:101211379 | 716.457 |