Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0684 ATGTCTTGCTCAAATCTGACTATGTGGGTGTCTTCTAAACCCACCGTCTCTGATGCATCCTCCCTTTCTTTCAGCTCGTTTCTCAGCCCTTTTCAGCTCCCTTCCCAGAGCTGCCCTGCTCGATCATTGTCGGTTTCGCCGATTCATTGCGGTCTTCGGGAGCTCCGAGACCGTATCGATTCGGTGAAGAACACCCAGAAGATCACTGAAGCCATGAAGCTTGTTGCTGCTGCAAAAGTCCGCAGGGCTCAAGAAGCTGTTGTTAATGGAAGACCATTCTCAGAGGCCTTGGTTGAGGTCCTTTACAACATCAATGAGCAGCTTCAAACAGAAGACATTGATGTTCCTCTAACCAAAGTAAGACCTGTTAAGAAAGTTGCATTGGTTGTTTGCACTGGTGACCGAGGTCTTTGTGGTGGATTCAACAACACCATCATCAAGAAAGCTGAAGCCAGAATCTCAGAATTGAAGCAACTGGGTCTTGAGTACACTGTCATCAGTGTCGGCAAAAAGGGTAACTCCTATTTCCTTCGCCGGCCTTACATTCCGGTGGATAAGTTCCTCGAAGGTGGCACTCTTCCCACTGCCAAAGAAGCTCAAGCAATAGCTGATGATGTTTTCTCACTCTTTGTCAGTGAGGAGGTTGATAAAGTAGAGCTTCTGTACACCAAATTCGTGTCTTTGGTCAAATCTGATCCTGTAATTCACACCCTTCTTCCTCTCTCGCCAAAGGGTGAGATCTGTGATGTGAATGGAATCTGTGTGGATGCTGCAGAAGATGAGTTCTTCAGATTGACAACAAAGGAAGGGAAACTGACAGTGGAAAGGGATTCAGTGAGGACAAGCACATCGGATTTCTCCCCAATTTTGGAGTTTGAGCAGGACCCAGTTCAGATCTTGGATGCTTTATTGCCTCTGTATTTGAACAGCCAGATTTTGAGGGCACTGCAAGAATCACTGGCCAGTGAGCTCGCAGCTAGAATGAGTGCTATGAGCAATGCGACTGATAATGCTTCTGAGCTGAAGAAAACTCTGTCGATTGTGTACAACAGACAGCGCCAAGCTAAGATCACTGGAGAAATATTGGAGATTGTTGCTGGTGCTAATGCCTTGACTTAA 1119 46.47 MSCSNLTMWVSSKPTVSDASSLSFSSFLSPFQLPSQSCPARSLSVSPIHCGLRELRDRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSEALVEVLYNINEQLQTEDIDVPLTKVRPVKKVALVVCTGDRGLCGGFNNTIIKKAEARISELKQLGLEYTVISVGKKGNSYFLRRPYIPVDKFLEGGTLPTAKEAQAIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPKGEICDVNGICVDAAEDEFFRLTTKEGKLTVERDSVRTSTSDFSPILEFEQDPVQILDALLPLYLNSQILRALQESLASELAARMSAMSNATDNASELKKTLSIVYNRQRQAKITGEILEIVAGANALT 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5275958 5277076 - Lag0024729.1 Lac10g0684 583215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0684 372 PANTHER ATP SYNTHASE GAMMA CHAIN 1 371 IPR000131 GO:0000275(PANTHER)|GO:0009535(PANTHER)|GO:0015986(InterPro)|GO:0015986(PANTHER)|GO:0045261(InterPro)|GO:0046933(PANTHER)|GO:0046933(InterPro)
Lac10g0684 372 FunFam ATP synthase gamma chain, chloroplastic 268 371 - -
Lac10g0684 372 NCBIfam ATP synthase F1 subunit gamma 51 371 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Lac10g0684 372 FunFam ATP synthase gamma chain, chloroplastic 119 242 - -
Lac10g0684 372 FunFam ATP synthase gamma chain, chloroplastic 50 117 - -
Lac10g0684 372 Gene3D - 120 242 - -
Lac10g0684 372 Pfam ATP synthase 52 371 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Lac10g0684 372 PRINTS ATP synthase gamma subunit signature 123 142 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Lac10g0684 372 PRINTS ATP synthase gamma subunit signature 216 233 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Lac10g0684 372 PRINTS ATP synthase gamma subunit signature 349 370 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Lac10g0684 372 PRINTS ATP synthase gamma subunit signature 318 337 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Lac10g0684 372 CDD F1-ATPase_gamma 52 368 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Lac10g0684 372 Hamap ATP synthase gamma chain [atpG]. 49 371 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Lac10g0684 372 Gene3D ATP synthase, gamma subunit, helix hairpin domain 50 119 - -
Lac10g0684 372 Gene3D ATP synthase, gamma subunit, helix hairpin domain 268 371 - -
Lac10g0684 372 ProSitePatterns ATP synthase gamma subunit signature. 357 370 IPR023632 -
Lac10g0684 372 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 51 371 IPR035968 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0145 Lac-Chr10:1108388 Lac10g0684 Lac-Chr10:5275958 9.90E-18 transposed
Lac5g1345 Lac-Chr5:26891965 Lac10g0684 Lac-Chr10:5275958 5.00E-108 transposed
Lac1g3212 Lac-Chr1:52151623 Lac10g0684 Lac-Chr10:5275958 2.10E-173 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0684 K02115 - csv:101214408 665.225