Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0707 ATGAGCCCTTTCATGGAATCGGAAAAGCTCTTAATTTCACGAGGAAACCCTAGAACTGCAGCATATTCATCCGACCGCTCACTCCCCACCACCAGCGGCAGGGCTATGCCCAATGAGTTGCCGCAGAAGCCTCCCCCTTCAATTGCTCACCGCTTTAGAGCTCTGCTAAAGCAGCGGGATGACGAATTCAGGGTTTCTGGCCATGATGTTGTTCCCCCTCCTTCCACTGAGGATATCGTGCAGTTCTACGAGCTCATGTTGTCCGAGCTCACCTTTAATTCCAAGCCCATCATTACGGATCTCACTGTTCTTGCTGACGAGCAGAGAGAACATGGGAAGGGCATTGCCGACTTAATTTGTGCGCGTATTATCGAGGTCCCGGTTGACCAAAAACTTCCTTCATTATATCTATTGGACAGTATCGTTAAGAATGTTGGGCACGAATACATTAGTTATTTCTCGTCTCGTTTACCTGAGGTGTTTTGCGAGGCTTACAGGCAAGTTCATCCTAATTTGCACAATGCAATGCGTCACCTCTTCGGGACATGGTCAACTGTGTTTCCACCATCCATCCTTCGGAAGATTGAAGCTCAACTTTCTCAGATAACAACACAAGAGTCCCCAGGTTTGACATCCTCAAGGGCTTCTGAGTCTCCTCGGCCAACTCATGGCATTCATGTCAATCCGAAATACTTGCGTCAACTAGAACACTCAGTGGTGGATAAACATATCCAAGATGCAAGAGGGACTTCAGCTCTAAAAGTGCATGATAAAAAACTTGCTCCTGGATATGAAGAGTATGACTATGATCATGCAGATGTTCTCGAACATGGTGGAGCTCAAGCATTTAATGCAATGGGAAGCATGGGTCATGATTCTTTTACTCTTGGAACAAATAAAGCAAATCTAAAGATAGCGAAATCGTCTTTGTCTTCAAGAATTGGAAACAATAGGCCTCTACAATCAGTTGGTGATGAACTTGAAGCAGTTAGAGCGTCACCATCTCAGAATGTATATGATTATGAAGTTTCTAGAATGATTGATAGAAATGAGGATACAAATAAATGGAGGAGAAAACAATATCCTGACGATAATTTGACTGGACTTGAAAGTACTTCTTCATATAATATTAGAAACGGACATGCACTTGAGGGACCAAGAGCTTTAATTGAAGCATATGGAAGCGATAAAGGAAAAGGTTATTTAAATGACAATCCACCACAGGTTGAACATTTTTCTATTAATGGTATAGACAACAAGGTGACTCCAGTAACTTGGCAAAACACTGAAGAAGAAGAGTTTGATTGGGAAGATATGAGCCCCACATTAGCTGACAGAGGCAGAAGTAGTGATATGTTGAAACCACCAGTCCTGCCTTCAAGATTTAGGACGAACAGATCAAATGCTATGTCTGTAGAGCCTGGAATGAGAAGCAATTGGTCTAGTCAGGTTCAGCTACCTACTTCTCTTGATTCCTCCATAGTTACTGAAGATGTGGTCCCATCAGCAGCTGATATTTGGAATATGCACAATCATCTCTCTCATACATCCCAGAACCTCATGAACGCTAAAGGAACAGGAAGGAATTTTCAGATGCCTTTGTTAGGGAGAGGCATAGCTTCATCTGGTAGTGAGAAAATGTCTCCTTTTGTTGATAAACTTCTGACCAATGATGCTTTACATAGGCCCCCTATCGTTGTTTCAAGATTGGGTTCTTCTGGTCTTGACTCTAGCATTGAGCTGCAATCAGTTGTACAATCTATGGGCCCAAGGCATCCTGTGAATGTTCCTAACTCTTGCCCACCCTCTAGGCCTCCAATTTTTCCTGTACCAAGACACAATAAGAGCCAGTTTGAGTCTTTAAATGGTAGCAATTCTTTCATGAATCGTGGAAATAGGTCTTTTTTGCCTGAGCAGCAGATGAATAATTTGAGAAGTAAGGAGCCAAGTCTAACAACTAAGTTGCCTCAAGTCGGCAATCAACATACTGGGCGTATTCCTTTGACTCAGGGAAACCAATTGCAGGCTATCCCTTTAAAACCTCAATTTCTACCATCTCAGGACATGCAAGATAATTTTAATGCATCAGCGGTACCTCCTGCATTACCACATTTAATGGCACCATCCTTGAGTCAAGGATACAGTTCACATGGACATCGTCCTGCTATTAGTGAGGGTTTGTCAAGTTCTGCCCCTATTGGGCAATGGAGCTTACCAGTTCATAACAGCCCCAGTAACTCTTTGCATTTACAAGGGGGACCACTGCCACCTCTACCACCTGGGCCTCATCCTACTTCTGTTCCAACGATACCCATCTCTCAAACTGCAGGATCCCTTATTCCTGGTCAGCAACCAGGAACTGCATTTTCTGGCCTTATAAGTTCTCTCATGGCCCAGGGTTTAATCTCATTGAACAATCAAGCTTCTGTACAGGATTCTGTTGGGTTAGAATTCAATCCAGATGTACTGAAGGTGCGACATGAATCTGCAATAACTGCTCTATATGCTGATCTTCCTCGACAATGCATGACCTGTGGCCTTAGGTTCAAGTCCCAGGAAGAGCATAGTAATCATATGGATTGGCATGTCACTAAAAATCGTATGTCGAAAAGTAGAAAGCAAAAGCCTTCTCGTAAGTGGTTTGTAAGTACAAGCATGTGGCTTAGCGGTGCAGAGGCTTTGGGAACTGAGGCAGTTCCAGGATTTTTGCCTGCTGAGGTCATTGTAGAGAAAAAGGATGATGAAGAATTGGCTGTTCCCGCTGATGAGGATCAGAAGACGTGTGCACTATGTGGAGAACCTTTTGATGATTTTTACAGTGATGAAACAGAGGAATGGATGTATAGGGGTGCTGTCTACATGAATGCACCTGATGGAGAAACGGCCGGCATGGATAAATCTCAGTTAGGGCCCATAGTGCATGCTAAATGCAGGACTGAATCTAATGTGGTTCCCTCTGAAAATTTTGACCAAGATGAACAAGGGGGAGTTAGTGAAGAGGGTAGTCGAAGAAAACGATTGCGGAGCTAG 3030 43.63 MSPFMESEKLLISRGNPRTAAYSSDRSLPTTSGRAMPNELPQKPPPSIAHRFRALLKQRDDEFRVSGHDVVPPPSTEDIVQFYELMLSELTFNSKPIITDLTVLADEQREHGKGIADLICARIIEVPVDQKLPSLYLLDSIVKNVGHEYISYFSSRLPEVFCEAYRQVHPNLHNAMRHLFGTWSTVFPPSILRKIEAQLSQITTQESPGLTSSRASESPRPTHGIHVNPKYLRQLEHSVVDKHIQDARGTSALKVHDKKLAPGYEEYDYDHADVLEHGGAQAFNAMGSMGHDSFTLGTNKANLKIAKSSLSSRIGNNRPLQSVGDELEAVRASPSQNVYDYEVSRMIDRNEDTNKWRRKQYPDDNLTGLESTSSYNIRNGHALEGPRALIEAYGSDKGKGYLNDNPPQVEHFSINGIDNKVTPVTWQNTEEEEFDWEDMSPTLADRGRSSDMLKPPVLPSRFRTNRSNAMSVEPGMRSNWSSQVQLPTSLDSSIVTEDVVPSAADIWNMHNHLSHTSQNLMNAKGTGRNFQMPLLGRGIASSGSEKMSPFVDKLLTNDALHRPPIVVSRLGSSGLDSSIELQSVVQSMGPRHPVNVPNSCPPSRPPIFPVPRHNKSQFESLNGSNSFMNRGNRSFLPEQQMNNLRSKEPSLTTKLPQVGNQHTGRIPLTQGNQLQAIPLKPQFLPSQDMQDNFNASAVPPALPHLMAPSLSQGYSSHGHRPAISEGLSSSAPIGQWSLPVHNSPSNSLHLQGGPLPPLPPGPHPTSVPTIPISQTAGSLIPGQQPGTAFSGLISSLMAQGLISLNNQASVQDSVGLEFNPDVLKVRHESAITALYADLPRQCMTCGLRFKSQEEHSNHMDWHVTKNRMSKSRKQKPSRKWFVSTSMWLSGAEALGTEAVPGFLPAEVIVEKKDDEELAVPADEDQKTCALCGEPFDDFYSDETEEWMYRGAVYMNAPDGETAGMDKSQLGPIVHAKCRTESNVVPSENFDQDEQGGVSEEGSRRKRLRS 1009
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5446038 5453795 + Lag0024752.1 Lac10g0707 583238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0707 1009 MobiDBLite consensus disorder prediction 15 46 - -
Lac10g0707 1009 MobiDBLite consensus disorder prediction 441 462 - -
Lac10g0707 1009 ProSitePatterns Zinc finger C2H2 type domain signature. 842 862 IPR013087 -
Lac10g0707 1009 MobiDBLite consensus disorder prediction 17 37 - -
Lac10g0707 1009 Gene3D - 73 202 IPR008942 -
Lac10g0707 1009 ProSiteProfiles CID domain profile. 75 203 IPR006569 -
Lac10g0707 1009 CDD CID_Pcf11 80 202 IPR047415 -
Lac10g0707 1009 SUPERFAMILY ENTH/VHS domain 74 203 IPR008942 -
Lac10g0707 1009 MobiDBLite consensus disorder prediction 203 223 - -
Lac10g0707 1009 SMART 558neu5 78 200 IPR006569 -
Lac10g0707 1009 Pfam CID domain 87 194 IPR006569 -
Lac10g0707 1009 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 55 1000 IPR045154 GO:0000993(PANTHER)|GO:0000993(InterPro)|GO:0003729(InterPro)|GO:0003729(PANTHER)|GO:0005737(PANTHER)|GO:0005849(PANTHER)|GO:0006369(InterPro)|GO:0006369(PANTHER)|GO:0006378(PANTHER)|GO:0031124(InterPro)
Lac10g0707 1009 MobiDBLite consensus disorder prediction 981 1009 - -
Lac10g0707 1009 FunFam polyadenylation and cleavage factor homolog 4 72 200 - -
Lac10g0707 1009 MobiDBLite consensus disorder prediction 203 219 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0707 Lac-Chr10:5446038 Lac10g2914 Lac-Chr10:43740027 1.50E-75 dispersed
Lac10g0707 Lac-Chr10:5446038 Lac10g2918 Lac-Chr10:43784285 1.40E-41 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0707 K14400 - csv:101206311 1763.04