Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0711 ATGTTTGGAGCACATGATTTTGAAGATCATGAGGATCTTCTATTGGAGATGACCCAGAAAAATTTTGAAACTGAAATGGAAAAATTTGGAGAAGATGAGTTCGAGAGTAGATCGGTGACCGACGCCATGGAAGCTCCTTCGGGAGACGACCAAAACCTTCAGAGTAATAAGAGGAAGCGTTACCATCGCCATACTCAGCTTCAAATCCAGGAGATGGAAGCGTTTTTTAAAGAGTGTCCTCACCCAGATGACAAGCAAAGAAAGCACCTCAGCCGTGAGCTAGGGCTCGAACCCCTCCAAGTCAAGTTCTGGTTTCAAAACAAACGCACCCAAATGAAGGCTCAACATGAACGACATGAGAATGCAATATTGAAAGCTCAAAATGAGAAGTTGAGAACAGAAAACATGAGGTATAAGGAAGCTCTAAGCAATACCAATTGCCCTAATTGTGGAGGTCCAGCCGCTCTTGGTGAGATGTCCTTTGATGGCCAACATTTGAGAATTGACAATGCACATTTAAGAGAAGAGATCGAGAGATTAAACACGGTTGCTACCAAATATGGTGGCAAGGCATGGGCTTCCCATTCCCATATTCCATCTCATCATGTTCCTTCGAGAGCCCTTGATTTGGGCGTTGGGAGATTGAAGTCCCAACCAGATTTCTTAGGGGAAATGTATGGAGTTGGAGACATGTTGAAGTCTGTGACCACTGAAATTGACAAGCCAGTAATCGTTGAGCTCGCAGTTTCAGCCATGGAAGAAGTGTACAGAATGGCTCAAGCAGGAGAGCCCTTGTGGGTTCCTGGTGAAAACTCCATGGAAATGCTGAATGAAGATGAATACTTGAGGACTTACTCTAGAGGAATTGGCCCTAGAGTTTTGGGGCTAAGCTTTGAAGCTTCAAGGGAATCCTCCATTGTTGCTTTCAATCATCTAAAACTTGTCGACATTCTCATGGACGTGAATCAGTGGTCGACCATATTTTGCGGGATAGTTTCAAGAGCATTGACCCTGGAAGTGTTATCAAGTGGAGTTGCTGGCAACTACAATGGAGCTATACAAGTCATGACAGCAGAGTTCCAGGTTCCTTCTCCTCTGGTTCCGACTCGCCAAAATTACTTCGTGAGATACTGCAAGCAGCAGCAGGCCGAGGGGACATGGGCTGTGGTGGATGTTTCTCTCGACTATTTACGCCCCACTCCAATTTCAAGGACTCGAAGAAGACCCTCCGGTTGCTTGATCCAAGAACTCCCAAATGGTTACTCAAAGGTTACTTGGGTGGAACATGTGGAAGTGGATGACCGAGCAGTGCACAATTTGTACAAACGACTGGTGACTTGTGGGCTTGCGTTCGGCGCAAAACGGTGGGTGGCTACTCTGGACCGACAGTGCGAGCGCCTCACCAACTCCTTGGCGGCCAATATTCCTGCAGTAGACATATGCGTGGTGACAGGGCAGGAGGGGAGGAAGAGCGTGATGAAGCTAGCAGAGAGGATGGTGACGAGCTTCTGCAGTGGCGTTGGGGCTTCTTCGGCTCACAATTGGACCACATTATCCGCCATTGGTTCGGACGACGTTCGAGTCATGGCTCGAAAGAGCCTCGACGACCCGGGCAGGCCTCCTGGCATTGTTCTTAATGCAGCCACTTCATTCTGGATTCCAATTCCTCCTAACAGAGTCTTCGATTTCCTCCGAGATCAAAACAGGCGCAGCCAGTGGGATATACTTTCAAATGGTGGCTTGGTCCAAGAAATGGCTCGCATTGGCAACGATCGCAACCCAGGAAACTCCGTCTCGTTGCTTCGTGTCAACAGTGCAAATTCAAGCCAGAGCAACATGCTGATACTACAAGAAAGTTGCAGCGACGTGAGCGGCTGCTACATAATTTACGCACCAGTCGACACCATCGCCATGAACATGGTGTTAAGCGGCGGCGACCCTGACTATGTTGCTCTCTTGCCATCCGGATTCGCCATACTCCCCGATGGGCCTATTGGGCCGGATGGGCCTGGCCCCAATGGACCTCCAGGAATTCTCGAGTTCGGGTCGGGTGGTTCGTTGCTCACAGTTGCATTTCAGATATTGGTGGATTCAATTCCAACTGCCAAACTGTCTATGGGATCGGTGGCCACGGTGAACAGCCTCATCAAGTGCACCGTCGAAAGGATTAGAGCTGCAGTCATGTGTGACCAGCCTTTGAATTGA 2205 48.84 MFGAHDFEDHEDLLLEMTQKNFETEMEKFGEDEFESRSVTDAMEAPSGDDQNLQSNKRKRYHRHTQLQIQEMEAFFKECPHPDDKQRKHLSRELGLEPLQVKFWFQNKRTQMKAQHERHENAILKAQNEKLRTENMRYKEALSNTNCPNCGGPAALGEMSFDGQHLRIDNAHLREEIERLNTVATKYGGKAWASHSHIPSHHVPSRALDLGVGRLKSQPDFLGEMYGVGDMLKSVTTEIDKPVIVELAVSAMEEVYRMAQAGEPLWVPGENSMEMLNEDEYLRTYSRGIGPRVLGLSFEASRESSIVAFNHLKLVDILMDVNQWSTIFCGIVSRALTLEVLSSGVAGNYNGAIQVMTAEFQVPSPLVPTRQNYFVRYCKQQQAEGTWAVVDVSLDYLRPTPISRTRRRPSGCLIQELPNGYSKVTWVEHVEVDDRAVHNLYKRLVTCGLAFGAKRWVATLDRQCERLTNSLAANIPAVDICVVTGQEGRKSVMKLAERMVTSFCSGVGASSAHNWTTLSAIGSDDVRVMARKSLDDPGRPPGIVLNAATSFWIPIPPNRVFDFLRDQNRRSQWDILSNGGLVQEMARIGNDRNPGNSVSLLRVNSANSSQSNMLILQESCSDVSGCYIIYAPVDTIAMNMVLSGGDPDYVALLPSGFAILPDGPIGPDGPGPNGPPGILEFGSGGSLLTVAFQILVDSIPTAKLSMGSVATVNSLIKCTVERIRAAVMCDQPLN 734
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5486944 5492973 - Lag0024756.1 Lac10g0711 583242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0711 734 Gene3D - 45 132 - -
Lac10g0711 734 Gene3D - 283 462 IPR023393 -
Lac10g0711 734 ProSiteProfiles START domain profile. 237 469 IPR002913 GO:0008289(InterPro)
Lac10g0711 734 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 50 729 IPR042160 -
Lac10g0711 734 Coils Coil 109 141 - -
Lac10g0711 734 Pfam Homeodomain 58 113 IPR001356 GO:0003677(InterPro)
Lac10g0711 734 CDD homeodomain 57 116 IPR001356 GO:0003677(InterPro)
Lac10g0711 734 MobiDBLite consensus disorder prediction 27 63 - -
Lac10g0711 734 ProSiteProfiles 'Homeobox' domain profile. 55 115 IPR001356 GO:0003677(InterPro)
Lac10g0711 734 SUPERFAMILY Homeodomain-like 44 115 IPR009057 -
Lac10g0711 734 SUPERFAMILY Bet v1-like 237 467 - -
Lac10g0711 734 SMART START_1 246 466 IPR002913 GO:0008289(InterPro)
Lac10g0711 734 SMART HOX_1 56 119 IPR001356 GO:0003677(InterPro)
Lac10g0711 734 FunFam Homeobox-leucine zipper protein GLABRA 2 246 465 - -
Lac10g0711 734 CDD START_ArGLABRA2_like 241 465 - -
Lac10g0711 734 FunFam Homeobox-leucine zipper protein HDG1 45 131 - -
Lac10g0711 734 Pfam START domain 247 466 IPR002913 GO:0008289(InterPro)
Lac10g0711 734 ProSitePatterns 'Homeobox' domain signature. 90 113 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lac10g0711 734 SUPERFAMILY Bet v1-like 487 724 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0711 Lac-Chr10:5486944 Lac9g2062 Lac-Chr9:40201422 2.30E-280 dispersed
Lac1g3228 Lac-Chr1:52245567 Lac10g0711 Lac-Chr10:5486944 8.90E-285 wgd
Lac10g0711 Lac-Chr10:5486944 Lac12g0611 Lac-Chr12:6484005 2.00E-284 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22742 PF01852 START 4.30E-50 CL0209 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0711 K09338 - csv:101212604 1205.28