Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0731 ATGAATGAGATCATCGCTATGGAATCTCTGCAGTTTGATTTCAATACAATCGATGCTGCTACTGACAATTTCTCAGAGGAAAACAGGTTGGGTGAAGGTGGATTTGGTGCAGTCTACAAGGGGAGGCTTGAGAATGGACAAGAGATAGCAGTGAAAAGATTATCAAGAAAATCTTTGCAAGATGCTGAAGAGTTCAAGAATGAGGTGATGTTGGTTGCTAAGCTTCAACATAGAAATCTTGTAAGGCTATGGGGATTCTGTTTGGAAGACACCGAGGGACATAAAGCATTAGATTGGTTGAGTCGATATAAGATCATCAATGGAATTGCTCGGGGAATGTTATATTTACATGAAGATTCTCGATTGCGAATTATTCATCGTGATCTTAAAGCTAGCAATGTCTTGTTAGATGAGGAAATGAATCCAAAGATTTCAGATTTTGGTATGGCAAGGATTATTCAAATTGATGAATCTCTAAGAAATATAGAACGAATGGTTGGCACCTACGGTTACATGGCCCCTGAATATGCGATGCATGGAAACTTCTCTATGAAATCTGATGTGTACAGCTTTAGAGTTTTAGTGTTGGAGATTATAAGTGGAAAGAAAACTAGCACCTTTTATATGTCAGGTCTTGCTGAAGACATCTTGTCCTATGCTTGGAAATTATGGAAGGATGGAACACCATTAGAACTATCGGACTCGGGTTTGAGAGATAGTTACACAAGAAATATAGTGCTTAGAGGCATCCATATTGCTTTACTTTGTGTTCAAGAAGATCCTGGTTGTAGACCCTCCATGGCATCCGTTGTTCTTATGTTGAATAGTTATTCAGTTACTTTGCTTGAACCTAAAGAGTCATCGTTCTTAATGCGTAGTAGAGACAATGGCATTGCAATAGATGGCAATCCATCTTCGAGTGAATTTGCCCAATACTCTGCCAATCAAGTATCTATAACTGAGTTGTACCCACGATGA 978 38.85 MNEIIAMESLQFDFNTIDAATDNFSEENRLGEGGFGAVYKGRLENGQEIAVKRLSRKSLQDAEEFKNEVMLVAKLQHRNLVRLWGFCLEDTEGHKALDWLSRYKIINGIARGMLYLHEDSRLRIIHRDLKASNVLLDEEMNPKISDFGMARIIQIDESLRNIERMVGTYGYMAPEYAMHGNFSMKSDVYSFRVLVLEIISGKKTSTFYMSGLAEDILSYAWKLWKDGTPLELSDSGLRDSYTRNIVLRGIHIALLCVQEDPGCRPSMASVVLMLNSYSVTLLEPKESSFLMRSRDNGIAIDGNPSSSEFAQYSANQVSITELYPR 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5680441 5681992 + Lag0024776.1 Lac10g0731 583262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0731 325 SMART serkin_6 24 278 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0731 325 FunFam Cysteine-rich receptor-like protein kinase 10 1 96 - -
Lac10g0731 325 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 93 289 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Lac10g0731 325 Gene3D Transferase(Phosphotransferase) domain 1 91 289 - -
Lac10g0731 325 ProSiteProfiles Protein kinase domain profile. 24 278 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0731 325 FunFam cysteine-rich receptor-like protein kinase 10 82 281 - -
Lac10g0731 325 Gene3D Phosphorylase Kinase; domain 1 2 90 - -
Lac10g0731 325 Pfam Protein kinase domain 25 204 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0731 325 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g0731 325 ProSitePatterns Protein kinases ATP-binding region signature. 30 52 IPR017441 GO:0005524(InterPro)
Lac10g0731 325 SUPERFAMILY Protein kinase-like (PK-like) 9 294 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0731 Lac-Chr10:5680441 Lac10g0746 Lac-Chr10:5781596 5.60E-138 dispersed
Lac10g0731 Lac-Chr10:5680441 Lac10g0732 Lac-Chr10:5685983 1.40E-149 tandem
Lac1g3243 Lac-Chr1:52334626 Lac10g0731 Lac-Chr10:5680441 5.60E-100 wgd
Lac10g0241 Lac-Chr10:1882042 Lac10g0731 Lac-Chr10:5680441 7.00E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85638 PF07714 PK_Tyr_Ser-Thr 1.80E-36 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0731 - - - 0.0