Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0734 ATGGCCTGCGTTAATTTTCTTACATCCCTCATCCTCCTCGGTTTCCTTATCCATGGAAACGCTCAGACTTCAGTTGAATACCCATATCGCAGGTGCTTCTCCGGCAATTTCACCCAGAACAGTACCTACCAGTCCAACCTTAATCTTCTCTTTTCAAATCTCACCGCCAACGGTCCCCAAACAAATCGATTCTTCAATACTTCCGTCGGCCGTACACCGGACGACACCGTTTACGGTCTCTTCCAGTGCCGTGGGGACGTCACCAACAGCATCTGTCGAACTTGCTTGGCCACCGTTACCAGAGACACAGCTCGGCTCTTCTGTCCCCTGAGAAAGGGCGCTGTGGTTTGGCACGACGATTGCATACTCCACTATTCCGACCAACCTTTCTTTGCCACCGTCTCCACGGAGCCAAATTTGCAATTACTGAATACGGCTGATATAGACGTCGACAAGGCTCGATTCAACCAGCTAGTGATATCCACGTTGAGGGCCACCACGGCTCGGGCGGCCAACGCCTCTTCGGAGGGCGAATTGTTTGCAACCCAGGAGGCTAATTTCACATCAGATCTAACGCTTTACACATTAGCACAGTGTACCGGCGATTTGTCCAATTCGGATTGCGAAGAATGTTTAAGACAAGCTACCAATGATATTCCCAGTTGCTGCACTAATAAACAAGGTGGGAGAGTTCTGTTTCCCAGCTGTTTCGTTCGTTACGAAATTAATCTGTTTTATGACCTCCCACCGCCTCCACCTACTCTACCGCCGCCGGCTCTTCCTCCTCCTCCGCCAGGGGAAAGCAGAGCCTCAACGGTGATCATTGTAGCCATTGTGGTTCCAGTTACTGTCTCCATTCTGGTTTTTGTGGGCTGCTGTTTCTTGCGCCGACGAGCAAAACTGAGGAAATATACAGCTGCGAATGAAGATAGTGTTGTTGATGAGATAACCACTGTAGAATCTCTACAATTTGATTTCAATACAATTGAAGCTGCTACTAACAAATTCTCGGTGGAAAACAAGTTGGGTGAAGGTGGATTTGGTGCAGTCTACAAGGGTACACTTGATAATGGACAAGAGATAGCAGTGAAAAGATTATCAAGTAGTTCTTTGCAAGGTTCAGAAGAGTTCAAAAATGAGGTTTTGTTGGTTGCTAAGCTTCAACATAGAAATCTAGCGAGGCTATTAGGATTCTGCTTGGAGGGTGGAGAAAAGATACTTATTTATGAATACATTACCAACAAAAGCCTCGACTATTTCTTATTTGATTCTGAAAGACGGAGAGAGTTGGATTGGTCAACACGATGTAAAATTATCAACGGAATTGCTCGAGGAATGTTATATCTACATGAAGATTCCCGACTTCGAATTATTCATCGTGATCTTAAAGCGAGTAATATTTTGTTAGATGAAGATATGAATCCAAAGATTTCAGACTTTGGTATGGCAAGGATTATCCAATTAGATCAAACTCAAGAAAATACCAGTAGAATTGTTGGTACCTATGGTTACATGTCTCCTGAATACGCAATGCATGGAAACTTTTCTATAAAATCTGATGTATATAGCTTTGGAGTTTTAATCTTGGAGATTATAAGTGGCAAGAAAAACAACACATTTTACTTGTCAGATCTTGCTGAAGACATGTTAACATATGCTTGGAACCTCTGGAAGGACGAAACACCATTAGAGTTATTGGATCCGAGTTTGAGAGACAATTACTCAAGAAATGAAGTGCTTAGATGCATCCATATTGCATTGTTATGTGTTCAAGAGGATTCTAGGAGAAGACCCTCCATGGCATCCATTATTCTAATGCTTAATAGTTATTCGATTACTTTGTCATTACCAGAAGAGCCAACATCTTTCATGAGCAGGAAATACAATGATCTTGTTGTAGATAGTCATGATCAATCTACAAGTAAGTCTATCAAGTGGTCTGCTAATGAAGTATCCGTATCTGAGTTGCACCCACGATGA 1980 42.93 MACVNFLTSLILLGFLIHGNAQTSVEYPYRRCFSGNFTQNSTYQSNLNLLFSNLTANGPQTNRFFNTSVGRTPDDTVYGLFQCRGDVTNSICRTCLATVTRDTARLFCPLRKGAVVWHDDCILHYSDQPFFATVSTEPNLQLLNTADIDVDKARFNQLVISTLRATTARAANASSEGELFATQEANFTSDLTLYTLAQCTGDLSNSDCEECLRQATNDIPSCCTNKQGGRVLFPSCFVRYEINLFYDLPPPPPTLPPPALPPPPPGESRASTVIIVAIVVPVTVSILVFVGCCFLRRRAKLRKYTAANEDSVVDEITTVESLQFDFNTIEAATNKFSVENKLGEGGFGAVYKGTLDNGQEIAVKRLSSSSLQGSEEFKNEVLLVAKLQHRNLARLLGFCLEGGEKILIYEYITNKSLDYFLFDSERRRELDWSTRCKIINGIARGMLYLHEDSRLRIIHRDLKASNILLDEDMNPKISDFGMARIIQLDQTQENTSRIVGTYGYMSPEYAMHGNFSIKSDVYSFGVLILEIISGKKNNTFYLSDLAEDMLTYAWNLWKDETPLELLDPSLRDNYSRNEVLRCIHIALLCVQEDSRRRPSMASIILMLNSYSITLSLPEEPTSFMSRKYNDLVVDSHDQSTSKSIKWSANEVSVSELHPR 659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5710463 5713673 + Lag0024779.1 Lac10g0734 583265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0734 659 ProSitePatterns Serine/Threonine protein kinases active-site signature. 457 469 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g0734 659 FunFam Cysteine-rich receptor-like protein kinase 10 297 411 - -
Lac10g0734 659 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 146 622 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0042742(PANTHER)
Lac10g0734 659 ProSiteProfiles Gnk2-homologous domain profile. 136 245 IPR002902 -
Lac10g0734 659 FunFam Cysteine-rich receptor-like protein kinase 25 138 245 - -
Lac10g0734 659 Gene3D - 24 130 IPR038408 -
Lac10g0734 659 Gene3D - 139 245 IPR038408 -
Lac10g0734 659 CDD STKc_IRAK 342 608 - -
Lac10g0734 659 ProSiteProfiles Gnk2-homologous domain profile. 25 130 IPR002902 -
Lac10g0734 659 Pfam Protein tyrosine and serine/threonine kinase 338 604 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g0734 659 ProSiteProfiles Protein kinase domain profile. 336 611 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0734 659 Gene3D Transferase(Phosphotransferase) domain 1 412 618 - -
Lac10g0734 659 Pfam Salt stress response/antifungal 32 128 IPR002902 -
Lac10g0734 659 Pfam Salt stress response/antifungal 154 241 IPR002902 -
Lac10g0734 659 SMART serkin_6 336 611 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0734 659 Gene3D Phosphorylase Kinase; domain 1 297 411 - -
Lac10g0734 659 SUPERFAMILY Protein kinase-like (PK-like) 321 635 IPR011009 -
Lac10g0734 659 ProSitePatterns Protein kinases ATP-binding region signature. 342 364 IPR017441 GO:0005524(InterPro)
Lac10g0734 659 FunFam Cysteine-rich receptor-like protein kinase 28 28 129 - -
Lac10g0734 659 FunFam cysteine-rich receptor-like protein kinase 10 412 614 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0734 Lac-Chr10:5710463 Lac10g0740 Lac-Chr10:5732863 2.3e-311 dispersed
Lac10g0734 Lac-Chr10:5710463 Lac10g0735 Lac-Chr10:5718010 9.00E-88 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85640 PF07714 PK_Tyr_Ser-Thr 3.30E-50 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0734 - - - 0.0