Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0740 ATGCCCGCAACTTGTGTTAAACTCAATTACTTCTTTATCATGTTCAATTTTCTTCCTTTCCTCTTCCTTCTCTGTTTCCTTATCCATGGAAACGCACAGGCTTCAGTTGAATACCCATATCGCAGGTGCTTCTCCGGCAATTTCACCCAGAACAGTACCTACCAGTCCAACCTTAATCTTCTCTTTTCAATTCTCACCGCCAACGGCCCCCAAACAAATCGATTCTTCAATACTTCCGTCGGCCGTACACCAGCCGACACCGTTTACGGTCTCTTCCAGTGCCGTGGGGACGTCACCGGCAGCATCTGTCGAACTTGCTTGGCCACCGTTACCAGAGACACAGCTCGGCTCTTCTGTCCCCTGAGAAAGGGCGCTGTGGTTTGGCACGAAGATTGCCTACTCCACTATTCCGACCAACCTTTCTTTTCCACCGTCTCCACGGAGCCAAATTTGCAATTACTGAATACGGCTGATATAGACGTCGACAAGGCTCGATTTAACCAGCTAGTGATATCCACGTTGAGGGCCACCGCGGCTCGGGCGGCCAACGCCTCTTCGGTGGGCGAATTGTTTGCGACCCAGGAGGCTAATTTCACATCAGATCTAACGCTTTACACATTAGCACAGTGTACCGGCGATTTGTCCAATTCGGATTGCGAAGAATGTTTAAGACAAGCTACCAATGATATTCCCAGTTGCTGCACTAATAAACGAGGTGGGAGAGTTCTGTTTCCCTGCTGTTACGTTCGTTATGAAGTTTATATGTTTTATGACTTCACGGAGACAAATCCGACACCACCTCCTCCACCAGGGGAAAGCAGAGCCTCAACGGTGATAATTGTGGCCATTGTGGTTCCAATTACTATCTCCATTCTGCTTTTCGCGGGCTACTGTTTGTTGCGCCGAAGAGCAAACACGAGGAAATACATTACTGTGAATGAAGATAGTGATTTTGATGAGTTGACCACTGTGGAATCTCTACAATTTGATTTCGATACAATTGATGCTGCTACTAACAAATTCTCAGCAGAAAACAAATTGGGTGAAGGTGGATTTGGGGCAGTCTACAAGGGTACACTTGATAATGGACAAGAGATAGCAGTGAAGAGATTATCAAGTAGATCTTTGCAAGGTTCTGAAGAGTTCAAAAATGAGGTTTTGTTGGTTGCTAAGCTTCAACATAGAAATTTAGTGAGGCTATTGGGATTTTGCTTGGATGATGAAGAAAAGATACTTGTCTATGAGTACATCTCCAACAAAAGCCTCGACTATTTCTTATTTGATTCTGTAAGACAGAGAAAGCTGGATTGGTCAACGCGACATAAGATCATCAACGGAATTGCTCGAGGAATGTTATATCTACATGAAGATTCACAACTTCGGATTATTCATCGTGATCTTAAAGCAAGTAACATCTTGTTAGATGGAGATATGAATCCAAAAATTTCGGACTTTGGTATGGCAAGAATTATCCAATTAGATCAAACTCAAGAAAATACTAGCAGAATTGTTGGTACCTATGGTTACATGTCTCCTGAATATGCAATGCACGGAAACTTTTCTCTAAAATCTGATGTGTATAGCTTTGGAGTCTTAATCTTGGAGATTATAAGTGGCAAGAAAAACAACATGTTTTACTCGTCAGATCTTGCTGAAAACATGTTAACCCACGCTTGGAAACTCTGGAAGGACCAAACTCCATTAGAGTTATTGGATACGAGTTTGAGAGACAATTATTCCAGAAATGAGGTGCTTAGATGCATTAATATTGCCTTGTTATGTGTTCATGAGGATTCCAGAAGAAGGCCATCTATGTCATCCATTATTCTAATGCTTAATAGCTATTCGATTACTTTGTCAATGCCAACAAAGCCAACATGCTTCATGGGTAGAAACTACGATGACAATGTTGTAGATAGTGATCAATTGACGAGTAAGTCTATCAAGTGGTCTCTAATGAAGCATCCATATAGCTGA 1977 42.44 MPATCVKLNYFFIMFNFLPFLFLLCFLIHGNAQASVEYPYRRCFSGNFTQNSTYQSNLNLLFSILTANGPQTNRFFNTSVGRTPADTVYGLFQCRGDVTGSICRTCLATVTRDTARLFCPLRKGAVVWHEDCLLHYSDQPFFSTVSTEPNLQLLNTADIDVDKARFNQLVISTLRATAARAANASSVGELFATQEANFTSDLTLYTLAQCTGDLSNSDCEECLRQATNDIPSCCTNKRGGRVLFPCCYVRYEVYMFYDFTETNPTPPPPPGESRASTVIIVAIVVPITISILLFAGYCLLRRRANTRKYITVNEDSDFDELTTVESLQFDFDTIDAATNKFSAENKLGEGGFGAVYKGTLDNGQEIAVKRLSSRSLQGSEEFKNEVLLVAKLQHRNLVRLLGFCLDDEEKILVYEYISNKSLDYFLFDSVRQRKLDWSTRHKIINGIARGMLYLHEDSQLRIIHRDLKASNILLDGDMNPKISDFGMARIIQLDQTQENTSRIVGTYGYMSPEYAMHGNFSLKSDVYSFGVLILEIISGKKNNMFYSSDLAENMLTHAWKLWKDQTPLELLDTSLRDNYSRNEVLRCINIALLCVHEDSRRRPSMSSIILMLNSYSITLSMPTKPTCFMGRNYDDNVVDSDQLTSKSIKWSLMKHPYS 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5732863 5736071 + Lag0024785.1 Lac10g0740 583271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0740 658 Gene3D - 35 141 IPR038408 -
Lac10g0740 658 Gene3D - 150 256 IPR038408 -
Lac10g0740 658 ProSitePatterns Protein kinases ATP-binding region signature. 347 369 IPR017441 GO:0005524(InterPro)
Lac10g0740 658 FunFam cysteine-rich receptor-like protein kinase 10 417 619 - -
Lac10g0740 658 Gene3D Transferase(Phosphotransferase) domain 1 417 623 - -
Lac10g0740 658 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g0740 658 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 157 628 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0042742(PANTHER)
Lac10g0740 658 Gene3D Phosphorylase Kinase; domain 1 303 416 - -
Lac10g0740 658 Pfam Salt stress response/antifungal 166 253 IPR002902 -
Lac10g0740 658 Pfam Salt stress response/antifungal 43 139 IPR002902 -
Lac10g0740 658 ProSiteProfiles Gnk2-homologous domain profile. 147 256 IPR002902 -
Lac10g0740 658 FunFam Cysteine-rich receptor-like protein kinase 10 302 416 - -
Lac10g0740 658 ProSiteProfiles Protein kinase domain profile. 341 616 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0740 658 SMART serkin_6 341 616 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0740 658 FunFam Cysteine-rich receptor-like protein kinase 28 39 140 - -
Lac10g0740 658 CDD STKc_IRAK 347 613 - -
Lac10g0740 658 FunFam Cysteine-rich receptor-like protein kinase 25 149 256 - -
Lac10g0740 658 Pfam Protein tyrosine and serine/threonine kinase 343 610 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g0740 658 ProSiteProfiles Gnk2-homologous domain profile. 36 141 IPR002902 -
Lac10g0740 658 SUPERFAMILY Protein kinase-like (PK-like) 326 633 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0730 Lac-Chr10:5677985 Lac10g0740 Lac-Chr10:5732863 2.80E-28 dispersed
Lac10g0734 Lac-Chr10:5710463 Lac10g0740 Lac-Chr10:5732863 2.3e-311 dispersed
Lac10g0740 Lac-Chr10:5732863 Lac10g0743 Lac-Chr10:5758141 5.40E-289 dispersed
Lac10g0738 Lac-Chr10:5726396 Lac10g0740 Lac-Chr10:5732863 4.50E-93 proximal
Lac10g0739 Lac-Chr10:5729761 Lac10g0740 Lac-Chr10:5732863 1.10E-142 tandem
Lac10g0740 Lac-Chr10:5732863 Lac10g0741 Lac-Chr10:5745812 1.40E-260 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85643 PF07714 PK_Tyr_Ser-Thr 7.20E-51 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0740 - - - 0.0