Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0758 ATGGAGATCGAGGGGCAAGAACAGTGGCGCCAGATTAGGGTTGTGAAGATCGAATCCTTGGAATCGTGGAACTTCTACTTGGCCAAAGCCACTCATCAGGACTCTCTCATTGTTGTGCACTTCACTGCTTCTTGGTGCATGCCTTCTGTTGCTATGAATCCATTCTTTGAAGAACTGGCCTTTACCTATCCAGATGCTTTGTTTCTCACAGTCGATGTTGATGAGGTTAAGGAAGTGGCTGCTAAACTGGAGATAAAGGCAATGCCAACTTTCTTGCTGATGAAGAATGGTACTCAGATTGACAAGGTTGTGGGTGCAAATCCAGAAGAGATAAGGAAAAGGATAGACGCATCTGTTGAGACCATACATAGATATAAAAGACAAGTTGCAAGCCTGGCTCTTGTTTATGTGGTTTTGGTCTCTCAGATCATCAGTTTTCCAGAGATGGGGTCGCCTGAAATTGCGGATTGGGTTTTCGATTACGGTGTCATTGAGGACATTCCTGTCCCCGGCGGCGACCTACCTTCGCTTGATCTTCCTGTTTTCACTTTGCCTTCTTGCGATTTCGCTGCCTCCTTCAGGGCAGACTTTGATGAGCTACATGGAAAGCCAGACGATATGATAGAATCTGGGTCCAGGAAAAGGATGAGCTCTGGATCAAATGCATCCGGGTCCAAAGCACATAAAGAGAAAATGAGGAGGGATAGACTGAATGACAGGTTTCTGGAATTGAATTCCATCCTCAATCATGGAAGGCCTCCCAAAATTGACAAGTCTGCTATTTTGGGTGATGCAGTTCGAATGATCATACAGCTAAGGGATGAGGCTCAGAAGCTGAAGGAGTCTAATGAGAATTTTCAGGAGAAGATTAATGAAATGAAGGCTGAAAAGAATGAACTAAGAGATGAGAAACAGAGGCTGAAAGAAACAAAAGACAGCCTTGAACAGAAAATGAAGGCCTTCAACACTCAACCTAGTTTCTTGCCTCACCCTCCTGTAATTCCTGCTGCATTTTCTGCTCCAAATCAGGTTGTTGGAGGCAAGTTGGTGCCTGTGATTGGATACCCAGGAGTATCCATGTGGCAGTTTATGCCTCCGAGCGCCATCGATACCTCACAAGACCACATTCTCCGGCCACCAGTCGCCTGA 1149 45.69 MEIEGQEQWRQIRVVKIESLESWNFYLAKATHQDSLIVVHFTASWCMPSVAMNPFFEELAFTYPDALFLTVDVDEVKEVAAKLEIKAMPTFLLMKNGTQIDKVVGANPEEIRKRIDASVETIHRYKRQVASLALVYVVLVSQIISFPEMGSPEIADWVFDYGVIEDIPVPGGDLPSLDLPVFTLPSCDFAASFRADFDELHGKPDDMIESGSRKRMSSGSNASGSKAHKEKMRRDRLNDRFLELNSILNHGRPPKIDKSAILGDAVRMIIQLRDEAQKLKESNENFQEKINEMKAEKNELRDEKQRLKETKDSLEQKMKAFNTQPSFLPHPPVIPAAFSAPNQVVGGKLVPVIGYPGVSMWQFMPPSAIDTSQDHILRPPVA 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5859681 5864394 - Lag0024803.1 Lac10g0758 583289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0758 382 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 228 300 IPR036638 GO:0046983(InterPro)
Lac10g0758 382 SMART finulus 227 278 IPR011598 GO:0046983(InterPro)
Lac10g0758 382 ProSiteProfiles Thioredoxin domain profile. 1 120 IPR013766 -
Lac10g0758 382 Gene3D - 224 299 IPR036638 GO:0046983(InterPro)
Lac10g0758 382 PANTHER BHLH TRANSCRIPTION FACTOR 156 382 IPR044818 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro)
Lac10g0758 382 SUPERFAMILY Thioredoxin-like 14 117 IPR036249 -
Lac10g0758 382 CDD bHLH_AtILR3_like 226 301 - -
Lac10g0758 382 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 221 272 IPR011598 GO:0046983(InterPro)
Lac10g0758 382 Pfam Helix-loop-helix DNA-binding domain 226 273 IPR011598 GO:0046983(InterPro)
Lac10g0758 382 Gene3D Glutaredoxin 2 125 - -
Lac10g0758 382 Coils Coil 269 324 - -
Lac10g0758 382 CDD TRX_family 27 116 - -
Lac10g0758 382 MobiDBLite consensus disorder prediction 204 233 - -
Lac10g0758 382 Pfam Thioredoxin 22 116 IPR013766 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0758 Lac-Chr10:5859681 Lac5g1493 Lac-Chr5:29885775 1.20E-54 dispersed
Lac10g0758 Lac-Chr10:5859681 Lac2g1358 Lac-Chr2:11426874 2.30E-50 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22743 PF00085 Thioredoxin 1.50E-20 CL0172 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0758 - - - 0.0