Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac10g0758 | ATGGAGATCGAGGGGCAAGAACAGTGGCGCCAGATTAGGGTTGTGAAGATCGAATCCTTGGAATCGTGGAACTTCTACTTGGCCAAAGCCACTCATCAGGACTCTCTCATTGTTGTGCACTTCACTGCTTCTTGGTGCATGCCTTCTGTTGCTATGAATCCATTCTTTGAAGAACTGGCCTTTACCTATCCAGATGCTTTGTTTCTCACAGTCGATGTTGATGAGGTTAAGGAAGTGGCTGCTAAACTGGAGATAAAGGCAATGCCAACTTTCTTGCTGATGAAGAATGGTACTCAGATTGACAAGGTTGTGGGTGCAAATCCAGAAGAGATAAGGAAAAGGATAGACGCATCTGTTGAGACCATACATAGATATAAAAGACAAGTTGCAAGCCTGGCTCTTGTTTATGTGGTTTTGGTCTCTCAGATCATCAGTTTTCCAGAGATGGGGTCGCCTGAAATTGCGGATTGGGTTTTCGATTACGGTGTCATTGAGGACATTCCTGTCCCCGGCGGCGACCTACCTTCGCTTGATCTTCCTGTTTTCACTTTGCCTTCTTGCGATTTCGCTGCCTCCTTCAGGGCAGACTTTGATGAGCTACATGGAAAGCCAGACGATATGATAGAATCTGGGTCCAGGAAAAGGATGAGCTCTGGATCAAATGCATCCGGGTCCAAAGCACATAAAGAGAAAATGAGGAGGGATAGACTGAATGACAGGTTTCTGGAATTGAATTCCATCCTCAATCATGGAAGGCCTCCCAAAATTGACAAGTCTGCTATTTTGGGTGATGCAGTTCGAATGATCATACAGCTAAGGGATGAGGCTCAGAAGCTGAAGGAGTCTAATGAGAATTTTCAGGAGAAGATTAATGAAATGAAGGCTGAAAAGAATGAACTAAGAGATGAGAAACAGAGGCTGAAAGAAACAAAAGACAGCCTTGAACAGAAAATGAAGGCCTTCAACACTCAACCTAGTTTCTTGCCTCACCCTCCTGTAATTCCTGCTGCATTTTCTGCTCCAAATCAGGTTGTTGGAGGCAAGTTGGTGCCTGTGATTGGATACCCAGGAGTATCCATGTGGCAGTTTATGCCTCCGAGCGCCATCGATACCTCACAAGACCACATTCTCCGGCCACCAGTCGCCTGA | 1149 | 45.69 | MEIEGQEQWRQIRVVKIESLESWNFYLAKATHQDSLIVVHFTASWCMPSVAMNPFFEELAFTYPDALFLTVDVDEVKEVAAKLEIKAMPTFLLMKNGTQIDKVVGANPEEIRKRIDASVETIHRYKRQVASLALVYVVLVSQIISFPEMGSPEIADWVFDYGVIEDIPVPGGDLPSLDLPVFTLPSCDFAASFRADFDELHGKPDDMIESGSRKRMSSGSNASGSKAHKEKMRRDRLNDRFLELNSILNHGRPPKIDKSAILGDAVRMIIQLRDEAQKLKESNENFQEKINEMKAEKNELRDEKQRLKETKDSLEQKMKAFNTQPSFLPHPPVIPAAFSAPNQVVGGKLVPVIGYPGVSMWQFMPPSAIDTSQDHILRPPVA | 382 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 5859681 | 5864394 | - | Lag0024803.1 | Lac10g0758 | 583289 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac10g0758 | 382 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 228 | 300 | IPR036638 | GO:0046983(InterPro) | |
Lac10g0758 | 382 | SMART | finulus | 227 | 278 | IPR011598 | GO:0046983(InterPro) | |
Lac10g0758 | 382 | ProSiteProfiles | Thioredoxin domain profile. | 1 | 120 | IPR013766 | - | |
Lac10g0758 | 382 | Gene3D | - | 224 | 299 | IPR036638 | GO:0046983(InterPro) | |
Lac10g0758 | 382 | PANTHER | BHLH TRANSCRIPTION FACTOR | 156 | 382 | IPR044818 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro) | |
Lac10g0758 | 382 | SUPERFAMILY | Thioredoxin-like | 14 | 117 | IPR036249 | - | |
Lac10g0758 | 382 | CDD | bHLH_AtILR3_like | 226 | 301 | - | - | |
Lac10g0758 | 382 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 221 | 272 | IPR011598 | GO:0046983(InterPro) | |
Lac10g0758 | 382 | Pfam | Helix-loop-helix DNA-binding domain | 226 | 273 | IPR011598 | GO:0046983(InterPro) | |
Lac10g0758 | 382 | Gene3D | Glutaredoxin | 2 | 125 | - | - | |
Lac10g0758 | 382 | Coils | Coil | 269 | 324 | - | - | |
Lac10g0758 | 382 | CDD | TRX_family | 27 | 116 | - | - | |
Lac10g0758 | 382 | MobiDBLite | consensus disorder prediction | 204 | 233 | - | - | |
Lac10g0758 | 382 | Pfam | Thioredoxin | 22 | 116 | IPR013766 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac10g0758 | Lac-Chr10:5859681 | Lac5g1493 | Lac-Chr5:29885775 | 1.20E-54 | dispersed | |
Lac10g0758 | Lac-Chr10:5859681 | Lac2g1358 | Lac-Chr2:11426874 | 2.30E-50 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
22743 | PF00085 | Thioredoxin | 1.50E-20 | CL0172 | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac10g0758 | - | - | - | 0.0 |