Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0771 ATGGCCGATGAATTTCCAGCCGGGATTTGCGGCCGGAAGTTGTGTGATTCAACCAGAGCCCTCTTCTCGCCGGCGGCCAATCCCTCGCCGTCTTCCATCGGTGACTCCACTTTCTCGATCGATCCAACCGTTCCAACGACTTCTAATTGGAACCAAAATTTTCTTGGAGATTGTGGACAAAGAGTTGACACCACTTTGGTGGTGGATTCGGTCACGAGCACAAAATTAAATTATGATGACCAAGAAACTAGTGGGAATCCTTCCATTTTCAAGGCCGATGATGACTTTGTGTTTTTAATGGAACAACAACCTTATAATCAAACCCCTTCCAACTTTTACGATAATGTTATTACAAGTACTACATGCCAAGGGTTGCCAATGGCCTTCCCTTCCAATGGCTACACTCCAACGTTGTTGCATAATTCATTGGATCAACCAAAACAAATTCTTGTCAACAGCCGGACCATTAGTTGTTGTTCCTCAGCAAATTCAGATGAGTTGTTGTCCCACTTGCTACAACCTCCACCCTTGAATTTCTCCAACAGTATTAGACCCAAATGCCCAAACCTCACAACAACAAAGGTGATTAGTTGTGATGAAGTTGTTCAAGATTCGGGTAGGGTTGAGAGGATAAACAAAAGTAATGAAATTGCAATAATCAAAAGGCCAAGAAGTGGCGTTCCATCCCCATTACCCACTTTTAAGGTTCGAAAAGAGAAGCTTGGCGACAAGGTCACAGCACTCCAACAACTCGTTTCGCCTTTTGGAAAGACTGATGCTGCATCTGTTCTACATGAAGCAATTGAGTACATCAAGTTTCTTCACGATCAAGTTCGTGTTTTGAGTACTCCATATATGGAAATTATTGGAGAATACGATGAAGAGCAACAGGTTAAGGAAGAATCGAGAGACACGAATGAGAACAAGAAACAAGATCTTCGAAGTCGAGGACTTTGTCTGGTGGCAATTCCTAGTACAGCTGCATTAGCAAATGGTAATACACTTGATTTCTGGTCGCCCACATTTGGAGGAACTTTTAGGAACAAGATTGTAAACCGGAATGTTAATCATACTCATATAGCCCTTATTTCCAAAAAGGCTAAATCCGACAGAATATCCGACTATAGATCGACCAGCCTCACAATGACTTTGTACAAGGTAAGTCGCCTTCGTCTTCTCCGATTTCTATCAGTCTTCTCTTCTCCGATTTCTATCATTCTTCTCGCCTTCGTCTTCTCCGACTTGTTCGCACATTCATCTTCTCCGATTTGTTCGCACATTCGGGCAGAAACGTATGTAAACGGACCATCACTCTCCTCCTTCCCCGTTTCTGCCTAA 1338 43.12 MADEFPAGICGRKLCDSTRALFSPAANPSPSSIGDSTFSIDPTVPTTSNWNQNFLGDCGQRVDTTLVVDSVTSTKLNYDDQETSGNPSIFKADDDFVFLMEQQPYNQTPSNFYDNVITSTTCQGLPMAFPSNGYTPTLLHNSLDQPKQILVNSRTISCCSSANSDELLSHLLQPPPLNFSNSIRPKCPNLTTTKVISCDEVVQDSGRVERINKSNEIAIIKRPRSGVPSPLPTFKVRKEKLGDKVTALQQLVSPFGKTDAASVLHEAIEYIKFLHDQVRVLSTPYMEIIGEYDEEQQVKEESRDTNENKKQDLRSRGLCLVAIPSTAALANGNTLDFWSPTFGGTFRNKIVNRNVNHTHIALISKKAKSDRISDYRSTSLTMTLYKVSRLRLLRFLSVFSSPISIILLAFVFSDLFAHSSSPICSHIRAETYVNGPSLSSFPVSA 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6067389 6072889 + Lag0024816.1 Lac10g0771 583302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0771 445 Gene3D - 235 311 IPR036638 GO:0046983(InterPro)
Lac10g0771 445 CDD bHLH_AtbHLH_like 231 282 IPR045239 -
Lac10g0771 445 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 48 325 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Lac10g0771 445 FunFam Transcription factor bHLH123 family 235 298 - -
Lac10g0771 445 Coils Coil 292 312 - -
Lac10g0771 445 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 235 287 IPR036638 GO:0046983(InterPro)
Lac10g0771 445 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 225 274 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0771 Lac-Chr10:6067389 Lac5g1540 Lac-Chr5:31098152 1.90E-43 dispersed
Lac1g3264 Lac-Chr1:52487895 Lac10g0771 Lac-Chr10:6067389 1.10E-43 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0771 - - - 0.0