Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0773 ATGAATCCTCCTAAACGGCCCATCTTCAAAATATTGTTGATTTTCGTCATTTTTGTTCGCAGCCACCAAAGCCTCGCCGTTGAGAATTCTGCCGTCGAGATCATCAAAGATGGAGATCGATTGATTTCCACCAACCAGAACTTCGCTCTTGGATTCTTCAGTTTCAACAATTCCACCACTCGCCGATATGTCGGAATTTGGTACAATAAAATTCCTGAACTAACTGTCGTTTGGGTTGCCAACAGAAACCAACCCCTCAACGACACCTCAGGAACTCTAGCCCTCGACCGTCATGGAAACGTCGTCGTTTTCAGCGCCACACAGACCATATCCCTTTGGGCTACCAACAATTCCATCCAGTCGCCCAACGACGTGTCGGTTCAGCTTCAGGATACCGGAAATCTCGCCGTGCTTCAACGACAAAGCCGAGGGGTTATTTGGCAAAGCTTCGATTATCCATCTCATGTCTTCCTTCCCTTCATGAAATTGGGGGTCAACCGGCGGACCGGGTTTAGCTGGTTCCTCACTTCATGGAAGGCGCACGACGATCCAGGAACCGGGAATTTCACCTGCCGGATTAACTCGACCGGCTATCCACAGATGATTTTGTACGAGGGGGATGTTCCATCGTGGCGGGGCGGGTCGTGGACGGGCCGGAGATGGACCGGAGTACCCGAAATGACGAGGTCGTTCATAATCAGCGTATCGTACATCGACAATACCGAAGAGGTTTCCCTATCAAACGGCGTAACGATGGATACGGTTTTAATGAGGATGACTTTAGACGAATCCGGTTCGTTACATCGGTCCACATGGAACGAACAGGACCGAAGGTGGCACGAGTTTTGGTCCGCTCCAACCGAGTGGTGCGACTACTACAACCGGTGCGGTAGGAACAGTAACTGCGACCCGTACAACGCGGAACAGTTCCAATGCAAATGCCTGCCCGGGTTCGAACCGCGGTCCGACCGGAATTGGTTCTTGAGAGATCCGACGGGTGGGTGCGTGAGGAAGAGGCCGAACGCGACGTGTCGGAGTGGAGAGGGTTTCGTGAATGTGGCACGGGTGAAGGTGCCGGACACGTCGACGGCACGTGCGGATATGAACATGAGCTTAGAAGCGTGCGAACAAGCGTGTCTGAAGGATTGTAACTGCACGGCTTACACGAGCGCAAATGAGACGACGGGGACAGGGTGCGTGACGTGGTATGGAGATTTGATTGACACGCGGACCTATGCCAACGTGGGTCAAGACCTGTACGTAAGAGTTGATGCTGTTGAATTAGCACAATATGCAAAAAATTCAAATCGTCGTCCAACAAAGAAGGTGGTCGCAATTGTGGTTGTGTCTTTTGTTGCATTATTGCTGCTTGTGGCGTCGCTAGTTTACTTATGGGAAATGGCAAAGAAAAGAAAGGAGACATCTACGAGTTTATCTTATGACTTTGTGGACTCTCCAAATTCAAAGGAATTTGATGAAAGTAGAAGCTCAGATTTGCCTGTATTTGACTTGCATACCATAGCAAAGGCAACGGACAATTTTTCTTTTACTAACAGGCTTGGAGAAGGTGGTTTTGGGGCAGTTTATAAGGGGAAGCTTATAAATGGAGAGGAAATTGCAGTTAAAAGGCTGGCTAAGAATTCAGGCCAAGGAGTTGGAGAGTTCAAGAATGAAGTTACTTTAATTGCAAAGCTCCAACATAGAAACCTTGTCAGAATTTTAGGCTACTGCGTTAAGAATGAAGAGAAAATGCTTGTATATGAATATTTGCCAAACAAAAGCTTGGACACTTTCATCTTTGATGAAAGCAAGAAGGCTTTGCTCGATTGGAGAAAACGTTTTGAAATCATTTGTGGAGTTGCCCGAGGGATTTTATATCTTCATCAAGATTCAAGATTGAAAATCATCCACCGAGACTTGAAAGCGAGCAATATACTATTAGATGCAGATTTGAATCCCAAAATTGCAGATTTTGGTATGGCAAGAATATTTGGCCAAGATCAAATTCAAGCAAACACGAATCGCATCGTGGGAACATACGGCTATATGTCACCAGAGTACGCAATGGAAGGTCTATTCTCGGTGAAATCCGATGTATATAGCTTCGGAGTTTTAGTGTTGGAGATGATCACAGGCAAAAAGAACACCAACTATGATTCCTCTTACTTAAACTTGGTCGGACATGTTTGGGAGCTTTGGAAATTGGACAATGCAATGAAATTAGTTGACTCAAGTTTGGAAGGATCAAGTTGTGGACATGAAATCATGAGATGCCTCCAAATTGGACTATTGTGTGTGCAGGAGGATCCGACAGATCGTCCGACCATGTCGGCTGTCGTCTTCATGTTGGGTAATGAAGTGGGTCTTCCTTCTCCAAAGAAACCTGCTTTTATTTTGAAGAGAAAATACAACAGCGGTGATCCATCCACCAGTACTGAAGGAGCCAACTCTGTAAATGATCTAACAATTTCCATAATCCATGCTCGTTAA 2490 46.27 MNPPKRPIFKILLIFVIFVRSHQSLAVENSAVEIIKDGDRLISTNQNFALGFFSFNNSTTRRYVGIWYNKIPELTVVWVANRNQPLNDTSGTLALDRHGNVVVFSATQTISLWATNNSIQSPNDVSVQLQDTGNLAVLQRQSRGVIWQSFDYPSHVFLPFMKLGVNRRTGFSWFLTSWKAHDDPGTGNFTCRINSTGYPQMILYEGDVPSWRGGSWTGRRWTGVPEMTRSFIISVSYIDNTEEVSLSNGVTMDTVLMRMTLDESGSLHRSTWNEQDRRWHEFWSAPTEWCDYYNRCGRNSNCDPYNAEQFQCKCLPGFEPRSDRNWFLRDPTGGCVRKRPNATCRSGEGFVNVARVKVPDTSTARADMNMSLEACEQACLKDCNCTAYTSANETTGTGCVTWYGDLIDTRTYANVGQDLYVRVDAVELAQYAKNSNRRPTKKVVAIVVVSFVALLLLVASLVYLWEMAKKRKETSTSLSYDFVDSPNSKEFDESRSSDLPVFDLHTIAKATDNFSFTNRLGEGGFGAVYKGKLINGEEIAVKRLAKNSGQGVGEFKNEVTLIAKLQHRNLVRILGYCVKNEEKMLVYEYLPNKSLDTFIFDESKKALLDWRKRFEIICGVARGILYLHQDSRLKIIHRDLKASNILLDADLNPKIADFGMARIFGQDQIQANTNRIVGTYGYMSPEYAMEGLFSVKSDVYSFGVLVLEMITGKKNTNYDSSYLNLVGHVWELWKLDNAMKLVDSSLEGSSCGHEIMRCLQIGLLCVQEDPTDRPTMSAVVFMLGNEVGLPSPKKPAFILKRKYNSGDPSTSTEGANSVNDLTISIIHAR 829
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6093429 6097443 - Lag0024818.1 Lac10g0773 583304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0773 829 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 481 589 - -
Lac10g0773 829 SMART ntp_6 345 423 IPR003609 -
Lac10g0773 829 SMART blect_4 32 153 IPR001480 -
Lac10g0773 829 Gene3D Transferase(Phosphotransferase) domain 1 590 788 - -
Lac10g0773 829 ProSitePatterns Protein kinases ATP-binding region signature. 520 542 IPR017441 GO:0005524(InterPro)
Lac10g0773 829 Pfam D-mannose binding lectin 75 179 IPR001480 -
Lac10g0773 829 ProSiteProfiles Bulb-type lectin domain profile. 26 150 IPR001480 -
Lac10g0773 829 Pfam Domain of unknown function (DUF3403) 786 829 IPR021820 GO:0004674(InterPro)
Lac10g0773 829 SUPERFAMILY Protein kinase-like (PK-like) 491 783 IPR011009 -
Lac10g0773 829 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 22 150 - -
Lac10g0773 829 SMART serkin_6 514 782 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0773 829 CDD B_lectin 32 153 IPR001480 -
Lac10g0773 829 ProSiteProfiles Protein kinase domain profile. 514 797 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0773 829 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 184 IPR036426 -
Lac10g0773 829 Gene3D Laminin 290 339 - -
Lac10g0773 829 CDD PAN_AP_plant 343 423 - -
Lac10g0773 829 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 590 790 - -
Lac10g0773 829 Pfam PAN-like domain 344 409 IPR003609 -
Lac10g0773 829 Gene3D - 29 150 IPR036426 -
Lac10g0773 829 Gene3D Phosphorylase Kinase; domain 1 488 589 - -
Lac10g0773 829 PIRSF SRK 4 829 IPR024171 GO:0004674(InterPro)
Lac10g0773 829 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 30 796 - -
Lac10g0773 829 ProSitePatterns Serine/Threonine protein kinases active-site signature. 635 647 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g0773 829 CDD STKc_IRAK 520 783 - -
Lac10g0773 829 ProSiteProfiles PAN/Apple domain profile. 344 424 IPR003609 -
Lac10g0773 829 Pfam S-locus glycoprotein domain 211 321 IPR000858 GO:0048544(InterPro)
Lac10g0773 829 Pfam Protein tyrosine and serine/threonine kinase 515 780 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0773 Lac-Chr10:6093429 Lac10g0780 Lac-Chr10:6143020 2.60E-187 dispersed
Lac10g0773 Lac-Chr10:6093429 Lac10g0779 Lac-Chr10:6135944 3.30E-235 proximal
Lac4g2867 Lac-Chr4:47245401 Lac10g0773 Lac-Chr10:6093429 9.80E-134 transposed
Lac7g0330 Lac-Chr7:2557477 Lac10g0773 Lac-Chr10:6093429 5.90E-44 transposed
Lac10g0773 Lac-Chr10:6093429 Lac12g0656 Lac-Chr12:6838027 5.10E-119 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85652 PF07714 PK_Tyr_Ser-Thr 9.00E-49 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0773 - - - 0.0