Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0780 ATGAGAGAACTGATTTGGAGGTGCAAGCTTTCGGCTTTTCTCTTTCTCTGGACAACCATAGCTCTGTTTCCAAGAAAATCATTAGCTATCGATAGCATAAAAGCAGGGGAATCCATTAATGTCAGTACCCAGATATTAGTTTCAGCTAAACAGAAGTTTGTGTTGGGAATCTTCAATCCCCAAGGCTCCAAATTTCAGTATTTGGGAATATGGTACAGAAACATCCCGCAGACTGTCGTGTGGGTCGCAAACAGAGACAGCCCACTTGTAAATTCCTTCGGCAGATTAACAGTCAATGAAGAAGGAATCATTATTCTTCTCAATGAAACAGGTGGGGTTTTATGGTCTTCCACTTCTCCAGGATCAGTGAAACAACCAGTGGCTCAGCTGCTGGATACAGGTAATTTAGTTTTAAAAGAATCAGGGTCTGAAAATTATGCGTGGCAGAGTTTTGATTATCCCTCTCATACTCTGTTACCTGGGATGAAACTTGGTTGGGACTCGAAAACCGGTCTGAACCGAAAGTTAACGTCTTGGAAAAGCTCGAACGATCCGTCGTCTGGGGATTACACTTACAGTGTTGAAATGGATGGGCTTCCCCAGTTTCTAGTTCGCGAAGGACCCAACACAACTTTTCGGGGCGGCCCATGGTTTGGTAACAGGTTTAGTGGTTCTGGTCCACTTAGAGAAACCGCAATTTATACTCCAAAGTTCGATTACAATGCTAACGAAGCATTATTTTCGTATGATGCTGTGAACAATCTCTCTGTAAGAGAGGTACTGAACTCGGGTGGGTTATTTCAACAGTACTATTGGGTCGATGATGGAGAATATTGGTACCCTGTGTATACATTGCCTGGAGATGGCTGCGATGTCTATGGACTCTGTGGGGATTTTGGTGTTTGTACGTTTTCCGTCACGGCGGGTTGTGATTGTATGGCTGGGTTTGAACCCAAATCGCCAGATGATTGGGAGAAGTTCAGGTGGGATGATGGTTGCGTTAGAAAGGACAATCGAACCTGTGGAAATGGAGAGGGATTCAAAAAAATCAGCAGTGTGAAATTGCCAGATTCTTCTGGGTATTTGGTGAATGTTAATATGAACATTCAAGACTGTGAGGCGGCGTGTTTGAACAATTGCTCTTGTTTGGCCTATGGAATGATGGAACTTCCCACAGGTGGCTATGGCTGCGTTACCTGGTTTCATAAACTGATGGATGTTAAATTTGTTCTTCAAAATGGACAGGATCTCTATGTTAGAGTGGCAGCTTCAGAATTAGACTCAACCAACAAGAAACTTTTGATTGCAATCAGTGTGTCTGTGGCTTCATTTCTAGGCTTCTTGGTTTTTGTCATTTGCTTTATCCAGGGGCGTAAAAGGAAAGTGGGAGGTGAGATTCAATCTCAAGAAAACGAAGTTGAGATGCCAATCTATGATTTTACCACAATCGAAACTGCCACGAATTATTTCTCTTTTTCAAATAAGATTGGTGAAGGCGGTTTTGGTCCTGTGTACAAGGGAAAACTTTCATGTGGACAAGAAATTGCTGTAAAGAGGCTGGCAGAGGGCTCTGGCCAAGGGCAAAGTGAGTTCAAAAACGAAGTTTTGTTGATCTCACAACTTCAACATCGAAATCTTGTCCAGCTTCTTGGGTTCTGCATTCACAAGGAAGAAACATTGCTGGTCTATGAATATATGCCAAACAAAAGTTTAGACCACTTCCTCTTCGATAATGAGAGGAGATACTTACTCAATTGGCAAAAAAGATTGGACATCATAATTGGAACAGCTCGAGGACTTCTTTATCTTCATAGAGATTCGAGGCTGAGAATAATACATAGGGATCTCAAAGTAAGTAATATATTACTAGACAATGAAATGAATCCAAAAATTTCAGACTTTGGCATGGCACGCATGTTTGGCGAAGATCAAACCATGACAAAAACCAAAAGAGTTGTTGGGACCTATGGCTATATGTCTCCAGAATATGCACTCGATGGATGTTTTTCATTGAAATCTGATGTCTTTAGTTTCGGGGTCATTCTTTTGGAAATAGTTAGCGGTAAGAAGAATAGAGGCTTCTTCCATACCGAACATCAACTGAATCTTCTTGGACATGCATGGAAGCTTTGGGATGAAGAAAATGCATTGGAGTTAATGGATGCAGCATTGGAGGATCAATTCCAACCTTCTGAAGCACTGCGATGCATTCAAGTAGGTCTTTTGTGTGTTCAACAGAATCCAGATGAAAGGCCAACTATGTGGTCAGTACTTTCGATGTTGGAGAATGAAAACATGTTGTTATCTGATCCTAAACAACCTGGATTTTACACAGAAAGAATGTTTTCTAAGAAGGATAAACTGTCGGCTGAAACCTCCTCTTCCAATGAAGTGACAGTCACATTGCTACATGGTCGTTAG 2421 41.64 MRELIWRCKLSAFLFLWTTIALFPRKSLAIDSIKAGESINVSTQILVSAKQKFVLGIFNPQGSKFQYLGIWYRNIPQTVVWVANRDSPLVNSFGRLTVNEEGIIILLNETGGVLWSSTSPGSVKQPVAQLLDTGNLVLKESGSENYAWQSFDYPSHTLLPGMKLGWDSKTGLNRKLTSWKSSNDPSSGDYTYSVEMDGLPQFLVREGPNTTFRGGPWFGNRFSGSGPLRETAIYTPKFDYNANEALFSYDAVNNLSVREVLNSGGLFQQYYWVDDGEYWYPVYTLPGDGCDVYGLCGDFGVCTFSVTAGCDCMAGFEPKSPDDWEKFRWDDGCVRKDNRTCGNGEGFKKISSVKLPDSSGYLVNVNMNIQDCEAACLNNCSCLAYGMMELPTGGYGCVTWFHKLMDVKFVLQNGQDLYVRVAASELDSTNKKLLIAISVSVASFLGFLVFVICFIQGRKRKVGGEIQSQENEVEMPIYDFTTIETATNYFSFSNKIGEGGFGPVYKGKLSCGQEIAVKRLAEGSGQGQSEFKNEVLLISQLQHRNLVQLLGFCIHKEETLLVYEYMPNKSLDHFLFDNERRYLLNWQKRLDIIIGTARGLLYLHRDSRLRIIHRDLKVSNILLDNEMNPKISDFGMARMFGEDQTMTKTKRVVGTYGYMSPEYALDGCFSLKSDVFSFGVILLEIVSGKKNRGFFHTEHQLNLLGHAWKLWDEENALELMDAALEDQFQPSEALRCIQVGLLCVQQNPDERPTMWSVLSMLENENMLLSDPKQPGFYTERMFSKKDKLSAETSSSNEVTVTLLHGR 806
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6143020 6146202 - Lag0024825.1 Lac10g0780 583311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0780 806 Pfam PAN-like domain 341 407 IPR003609 -
Lac10g0780 806 Gene3D Phosphorylase Kinase; domain 1 455 565 - -
Lac10g0780 806 CDD B_lectin 44 154 IPR001480 -
Lac10g0780 806 ProSiteProfiles Bulb-type lectin domain profile. 30 151 IPR001480 -
Lac10g0780 806 Pfam S-locus glycoprotein domain 212 320 IPR000858 GO:0048544(InterPro)
Lac10g0780 806 Pfam Domain of unknown function (DUF3403) 763 806 IPR021820 GO:0004674(InterPro)
Lac10g0780 806 SMART serkin_6 490 761 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0780 806 ProSiteProfiles PAN/Apple domain profile. 341 422 IPR003609 -
Lac10g0780 806 PIRSF SRK 2 806 IPR024171 GO:0004674(InterPro)
Lac10g0780 806 Gene3D Transferase(Phosphotransferase) domain 1 566 773 - -
Lac10g0780 806 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 456 565 - -
Lac10g0780 806 CDD STKc_IRAK 496 763 - -
Lac10g0780 806 SUPERFAMILY Protein kinase-like (PK-like) 469 762 IPR011009 -
Lac10g0780 806 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 566 769 - -
Lac10g0780 806 SMART blect_4 37 154 IPR001480 -
Lac10g0780 806 Pfam Protein tyrosine and serine/threonine kinase 491 760 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g0780 806 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 31 776 - -
Lac10g0780 806 CDD PAN_AP_plant 338 422 - -
Lac10g0780 806 ProSitePatterns Serine/Threonine protein kinases active-site signature. 611 623 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g0780 806 Pfam D-mannose binding lectin 78 180 IPR001480 -
Lac10g0780 806 SUPERFAMILY alpha-D-mannose-specific plant lectins 79 185 IPR036426 -
Lac10g0780 806 ProSiteProfiles Protein kinase domain profile. 490 768 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0780 806 Gene3D - 27 151 IPR036426 -
Lac10g0780 806 SMART ntp_6 342 421 IPR003609 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0773 Lac-Chr10:6093429 Lac10g0780 Lac-Chr10:6143020 2.60E-187 dispersed
Lac10g0780 Lac-Chr10:6143020 Lac5g1623 Lac-Chr5:33054586 1.60E-205 dispersed
Lac13g0889 Lac-Chr13:7296698 Lac10g0780 Lac-Chr10:6143020 7.40E-60 dispersed
Lac9g2856 Lac-Chr9:46507125 Lac10g0780 Lac-Chr10:6143020 1.10E-65 dispersed
Lac10g0780 Lac-Chr10:6143020 Lac10g0781 Lac-Chr10:6152636 2.10E-242 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85653 PF07714 PK_Tyr_Ser-Thr 1.70E-49 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0780 - - - 0.0