Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0784 ATGAGACCCCCAAAAAAGACGAGCTTTTCTCACTTTCTTCTTCTTCATCTTTTGTTTTTGTGCTTCCGTTTACGATTCTGCATCGGCAGAAATATCATCACATCAATCAGTTTCGTCACAGACCCTTCAACTCTGTCATCCGACAACAATTTCTTCGAGTTGGGGTTTTTCAGCCCTGTTAATACAACGAGCCGATATGTCGGAATCTGGCCCAACCAAGGTTCCGACCGAACTGTCGTATGGGTAGCTAACAGAGACAACCCTCTAAGCGATTCTTCTGGGGTTTTCACCATTTCCAAGGACGGAAATCTTGTTGTATTAGACGGAAAGAGCAACATTCTTTGGTCTTCAAACCTTCTAAAACCTGCAATCAACTCGTCTGCTCTGCTTTTAGATTCTGGCAACCTTGTTCTACGAGACTCTGCTTCCGGGATGATTCTATGGGAGAGTTTCAAAAACCCCTCTGATTCTTTCTTGCCAGGCATGAAATTTGTCACAAACACAATAACTAAAGAGAAAATAGGGCTGATGTCGTGGAAAAGTCCTTCTGATCCATCGAAAGGGCGTTTCTTCTTCGGCATCGATGCTGTAAATAACATTGCCGAAACTTGCATTTGGGAAGGCAGTGATCTGCGTTGGAGATCTGGTCCATGGAATGGGCAATCCTTCATTGGCATACCCCACATGGAGTCCGTTTATTATCTCCTTGGTTTCAGTCTCCTAATTGAAAACCGATCTTACTATCTATCAGCCGCAACTAGCAATGAGCTGCTCCCATATGAGTTTTATCAGCTAACCTCACAGGGGAATTTTCAGCAATCGTATTGGGATGATACGTGGAAGGACTGGAGAATTGGATGGTCGGCTCTAAAAACGGTGTGTGATTCCTACGGAAGCTGTGGGGCTTTTGGAATCTGTGACCCAAAATCGTCCCCTGTTTGCAGTTGTTTAAAAGGGTATCAGCCGAAGAACGAGGGGGAATGGAATCAAGGAAATTGGGGAAGTGGGTGTGTGAGAAAGACATTGTTCGAGTGTGAGAAAGTGAAAAATGTGAGTGTTGAAGTTGAACAAGGCAAGGAAGAAGATGGATTTTCGAAAGTGGAAACGGTTAATTTACCACACTTTGCAAAGTCGTTGAGTTCCTCTATTTCAGCCGATGGTTGCAGGGCTAAGTGCTTGGATGATTGTTCGTGTTCTGCTTATGCGTATGAAAATGGTATTGGGTGCATGTTATGGAGTGGGAATTTGATCGATGCTCGAAAGCTCGATTTTGGTGGAGGTAGTTTTTACCTTAGATTGCCATTTTCTGAACTAGAGGATGCTGTAAAAGGATCAAAAGTGATTATTATAGCTTCAGTAATAGCTGGAACTGGAACACTAATCATCATCTTCATCATATGTGTCTCATGGAGAAGGATAACGGGCCAAAAAGCAAAGGAAGGGGGAACAGGCAAGAAGATTTCGTTGTTAAACGAGAAACGTAAAATTTTGAACTTGACAACAGATCACAGAATCGGAATCAATTTGAATCAAGAGTTACCAACTTATGAGTTTGAGAAGCTGGCAATTGCAACAAACAATTTTCATTCAGATAACAAGCTTGGAAAGGGAGGGTTTGGGCCAGTGTATAAGGGAAGGTTGGTGGATGGCCAAGTAATAGCTATAAAAAGACTCTCAACAGCGTCTAATCAAGGACTTGAAGAATTTATAAATGAAGTAACAGTGATTTCAAAACTCCAACATCGAAATCTTGTTCGACTCTTTGGTTTTTGTGTCGAAGGAGAAGAGAAGATGTTGATATATGAGTACATGCCAAACCTAAGTTTGGATGCATTTATCTTTGATTCCTCCAAACGAAAGCTGTTAGATTGGAGAAAAAGGTTCAAAATCATCATGGGGATTGCACGAGGCCTTCTTTATCTTCACACCGATTCTAGATTGAAGATCATTCATAGAGATCTCAAGGCGAGTAACATCCTATTGGACGAGAATCTTAATCCCAAAATTTCAGATTTTGGTATGGCACGAATTTTTGGCAACAATGAAGATCAAGCAAATACTTTAAGAGTCGTTGGAACTTATGGCTACATGTCTCCTGAATACGCAATGGAAGGTCGATTTTCAGAGAAATCAGATGTGTTTAGCTTTGGAGTTTTGTTGCTTGAAATAATTAGTGGAAGAAAGAATACAAGTTTTTACCATGACGAGAATGTATTAAGCCTATTAGGACTGGCATGGAAATTATGGAACGAAGAGAATCTAATTGCTTTCGTTGATCAAGAAATCCATGACTCGAGCCATCACACAGAGATTTTGAGATGCATACATATAGGACTCTTGTGTGTTCAAGAAGCCATAAAGGATAGGCCAAATATGTTGACCATTCTTTCAATGCTTAACAGTGAAATTATAGATCTACATCCTCCAAAACAACCTGGATTTAGTAGCCTGCAATTCGAGAGCAGTACAGATTCATCTCAACAAAGTGAGCATAAATATTCTATAAATATGGTTACAATTACCAAGATTGGAGGACGGTAG 2541 40.73 MRPPKKTSFSHFLLLHLLFLCFRLRFCIGRNIITSISFVTDPSTLSSDNNFFELGFFSPVNTTSRYVGIWPNQGSDRTVVWVANRDNPLSDSSGVFTISKDGNLVVLDGKSNILWSSNLLKPAINSSALLLDSGNLVLRDSASGMILWESFKNPSDSFLPGMKFVTNTITKEKIGLMSWKSPSDPSKGRFFFGIDAVNNIAETCIWEGSDLRWRSGPWNGQSFIGIPHMESVYYLLGFSLLIENRSYYLSAATSNELLPYEFYQLTSQGNFQQSYWDDTWKDWRIGWSALKTVCDSYGSCGAFGICDPKSSPVCSCLKGYQPKNEGEWNQGNWGSGCVRKTLFECEKVKNVSVEVEQGKEEDGFSKVETVNLPHFAKSLSSSISADGCRAKCLDDCSCSAYAYENGIGCMLWSGNLIDARKLDFGGGSFYLRLPFSELEDAVKGSKVIIIASVIAGTGTLIIIFIICVSWRRITGQKAKEGGTGKKISLLNEKRKILNLTTDHRIGINLNQELPTYEFEKLAIATNNFHSDNKLGKGGFGPVYKGRLVDGQVIAIKRLSTASNQGLEEFINEVTVISKLQHRNLVRLFGFCVEGEEKMLIYEYMPNLSLDAFIFDSSKRKLLDWRKRFKIIMGIARGLLYLHTDSRLKIIHRDLKASNILLDENLNPKISDFGMARIFGNNEDQANTLRVVGTYGYMSPEYAMEGRFSEKSDVFSFGVLLLEIISGRKNTSFYHDENVLSLLGLAWKLWNEENLIAFVDQEIHDSSHHTEILRCIHIGLLCVQEAIKDRPNMLTILSMLNSEIIDLHPPKQPGFSSLQFESSTDSSQQSEHKYSINMVTITKIGGR 846
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6170813 6174082 + Lag0024829.1 Lac10g0784 583315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0784 846 CDD STKc_IRAK 534 800 - -
Lac10g0784 846 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 26 151 - -
Lac10g0784 846 ProSiteProfiles Bulb-type lectin domain profile. 30 151 IPR001480 -
Lac10g0784 846 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 604 807 - -
Lac10g0784 846 PIRSF SRK 3 846 IPR024171 GO:0004674(InterPro)
Lac10g0784 846 Gene3D Phosphorylase Kinase; domain 1 492 603 - -
Lac10g0784 846 Pfam D-mannose binding lectin 78 180 IPR001480 -
Lac10g0784 846 ProSitePatterns Serine/Threonine protein kinases active-site signature. 649 661 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g0784 846 Pfam Protein tyrosine and serine/threonine kinase 530 798 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g0784 846 CDD B_lectin 39 154 IPR001480 -
Lac10g0784 846 ProSiteProfiles PAN/Apple domain profile. 345 435 IPR003609 -
Lac10g0784 846 CDD PAN_AP_plant 356 434 - -
Lac10g0784 846 Pfam PAN-like domain 359 418 IPR003609 -
Lac10g0784 846 SMART blect_4 36 154 IPR001480 -
Lac10g0784 846 SUPERFAMILY alpha-D-mannose-specific plant lectins 79 185 IPR036426 -
Lac10g0784 846 SUPERFAMILY Protein kinase-like (PK-like) 510 799 IPR011009 -
Lac10g0784 846 SMART serkin_6 528 804 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0784 846 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 492 603 - -
Lac10g0784 846 Gene3D - 29 151 IPR036426 -
Lac10g0784 846 ProSiteProfiles Protein kinase domain profile. 528 834 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0784 846 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 19 814 - -
Lac10g0784 846 Gene3D Transferase(Phosphotransferase) domain 1 604 806 - -
Lac10g0784 846 SMART ntp_6 359 433 IPR003609 -
Lac10g0784 846 Pfam S-locus glycoprotein domain 213 324 IPR000858 GO:0048544(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0784 Lac-Chr10:6170813 Lac10g0793 Lac-Chr10:6237608 3.80E-295 dispersed
Lac10g0779 Lac-Chr10:6135944 Lac10g0784 Lac-Chr10:6170813 1.80E-54 proximal
Lac10g0782 Lac-Chr10:6162532 Lac10g0784 Lac-Chr10:6170813 3.40E-27 proximal
Lac10g0783 Lac-Chr10:6163475 Lac10g0784 Lac-Chr10:6170813 3.80E-271 tandem
Lac10g0784 Lac-Chr10:6170813 Lac10g0785 Lac-Chr10:6181258 3.50E-131 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85656 PF07714 PK_Tyr_Ser-Thr 3.20E-49 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0784 - - - 0.0