Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0789 ATGGATAACCTTGTAACCACATCCAATTGCATTATTGGAAGAAAACTATCCGCATTCCACAAACAGCTCGCTAGCTTTATCACTTCCTTAACTTCTCAGCATTTTCAATCAACGAGAGCCATGAAATCCCAACACAATTTCAGTACTTTTCCACATAATAATCGTCTTCTTTTTCTTCTTTCATTCACATACTTCTGTTCCACATTTTCCTTCAGCAGCGATACCATCACATCAGCCAATTTCATCAAACACCCTGCAACTCTAGTTTCAAATGATAGCTCCTTCGAGTTGGGCTTCTTCACACCAGCTAATTCTACAGGGCGTTATCTCGGGGTTTGGTTCAAGCAAATTTCTCCACAAACCGTAGTATGGGTGGCCAACAGAGACAACCCTCTCAAAGATACTTCTTCCGGGATCTTCACCATTTCCAAGGACGGGAATCTCGTTGTCTTAGATGAAAAAAACGCCACCTTTTGGTCTACAAACGTCTCTTCTCCTGCAACCAACACAAGGGCTCGAATTTTGGACTCGGGTAACCTTGTTTTGGAAGATACTTCTTCTGGATTGATCATATGGGAGAGTTTCAAATACCCTTCTGATAAATTCTTGCCTTCCATGAAACTCGTAACCAACACAAGAACCCAAGAGAAAGTGGGGCTTACCTCATGGAAGAGCCCTTCCAATCCATCGAAGGGTAACTTTTCTATAACTCTACATATTTACAACATTCCCGAAGTTATCATTTGGAATGAAGACTCTAACGTTCATTGGAGATCTGGTCCATGGGATGGCCAGACATTTCTTGGAATACCCAAGATGCTTTCTGTCTATCTCCTTGGATTTAACCTTGTAATCGAAGACCAAACTTACACTCTCTCCGTTGCATATAATAACGATGTTCGACCATTTGCTTACATAGTTTTGAGTTCAGAAGGGAACCTGAATCGAATAGATAGGAATTCCTCGGACGCGCAATGGAAGCAGATTTGGTCGGCAGTTCGATCGCAGTGTGATGTCTATGGTGCTTGTGGAGAATTTGGGATCTGCAATGCAAGAGCTTCTCCTGTTTGCAGTTGTATGAGAGGGTTTAAGCCAAAGAATGAAGAAGAATGGAATCGAGGGAATTGGAGTGGTGGGTGTGTGAGAAATACGCCTTTGAAGTGTGGGAAGAAGCTGAACAACGATAGTCATGTCGATCAAGAAGATGGGTTTTTGAAAATGGAAATGGTTAAAGTGCCTTTTCTTGCAGAGTGGTCGAATTCTTCTGTTTATTCAGTAGATGATTGCAGGCGCGAGTGCTTGGAGAATTGTTCGTGTAATGCCTATGCATTTCAGAAAACTATTGGTTGCATGCATTGGAGAAATAACTTGATTGATGTGCAAAAGTTTGAGAGAGATGGGGCTGATCTTTATCTTCGAATGGCATATGCAGATTTAGCTACAATCGATGTAAAGGACGATAAAGGAATTGTCATGGCCATACTGCTACCAACGCTTATAATTGTGTTCATCATTGTCATATCTTTCCTAGGAAGGAGGTGGAAAACTCGTAAATACGCTGAGAAGAGAACTATAGTGTTTAACAAAAAGGAGAATATTTTGAAGATTATTACAAAGAATGATATGCTTGACGATGACGTTAAACTAGAGGAGCTACCTCTTTATGATTTTCAGGAGCTTGAAATTGCAACAGACAACTTTGACATGAGTAACAAGCTTGGACAGGGTGGCTTTGGTCCTGTATATAAGGGAAAACTATTAAATGGACAAGAAATAGCGATAAAGAGGCTTTCAAAAGCTTCTAATCAAGGGTATGAAGAATTTATAAATGAAGTGAGGGTGATTTCAAAGCTGCAACACAGAAATCTTGTGCGGCTTCTTGGTTGTTGCATTGAAGGAGAAGAGAAGATGTTAATTTATGAGTACATGCCCAATTTAAGTTTGGATGCATTCATTTTTGATTCTACCAAACAAAAACTTTTGGACTGGAGAAAAAGATTTAATATTATCGACGGAATTGCTCGTGGTCTTCTTTACCTTCATAGAGATTCAAGATTGAAAATCATTCATAGAGATCTAAAGGCAAGTAATATTCTATTGGACACAGATTTGAATCCAAAAATCTCAGATTTTGGTGGGAGAAGGAATACTGGATTCCAGTGCCATGAACATTCCTTCAGCTTATTAGAATTTGCATGGAAGTTATGGATGGAAAACAATCTTATTCCTTTGATTGATCCAACAATATATGAATTGTGCTATCAAACCGAGATTTTAAGGTGCATCCAATTGGGACTCTTATGTGTTGAAGAACTTGTCGACGATAGACCAAATGTCTCTACTATTATTTCAATGCTCAACAGTGAAATTATAGATCTTCCCCTTCCAAAGAAGCCTAGCTTTGTTGGTAGACAACTTCAGAGTAGCAGAAAAGTATCACAACAATGTCTAGATAAATATTCTGTAAATAATGTTACACTCACCACAGTAATTAGTCGTTAG 2502 39.17 MDNLVTTSNCIIGRKLSAFHKQLASFITSLTSQHFQSTRAMKSQHNFSTFPHNNRLLFLLSFTYFCSTFSFSSDTITSANFIKHPATLVSNDSSFELGFFTPANSTGRYLGVWFKQISPQTVVWVANRDNPLKDTSSGIFTISKDGNLVVLDEKNATFWSTNVSSPATNTRARILDSGNLVLEDTSSGLIIWESFKYPSDKFLPSMKLVTNTRTQEKVGLTSWKSPSNPSKGNFSITLHIYNIPEVIIWNEDSNVHWRSGPWDGQTFLGIPKMLSVYLLGFNLVIEDQTYTLSVAYNNDVRPFAYIVLSSEGNLNRIDRNSSDAQWKQIWSAVRSQCDVYGACGEFGICNARASPVCSCMRGFKPKNEEEWNRGNWSGGCVRNTPLKCGKKLNNDSHVDQEDGFLKMEMVKVPFLAEWSNSSVYSVDDCRRECLENCSCNAYAFQKTIGCMHWRNNLIDVQKFERDGADLYLRMAYADLATIDVKDDKGIVMAILLPTLIIVFIIVISFLGRRWKTRKYAEKRTIVFNKKENILKIITKNDMLDDDVKLEELPLYDFQELEIATDNFDMSNKLGQGGFGPVYKGKLLNGQEIAIKRLSKASNQGYEEFINEVRVISKLQHRNLVRLLGCCIEGEEKMLIYEYMPNLSLDAFIFDSTKQKLLDWRKRFNIIDGIARGLLYLHRDSRLKIIHRDLKASNILLDTDLNPKISDFGGRRNTGFQCHEHSFSLLEFAWKLWMENNLIPLIDPTIYELCYQTEILRCIQLGLLCVEELVDDRPNVSTIISMLNSEIIDLPLPKKPSFVGRQLQSSRKVSQQCLDKYSVNNVTLTTVISR 833
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6199343 6202610 + Lag0024834.1 Lac10g0789 583320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0789 833 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 69 195 - -
Lac10g0789 833 Gene3D Transferase(Phosphotransferase) domain 1 717 793 - -
Lac10g0789 833 SMART serkin_6 567 791 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0789 833 SMART blect_4 79 198 IPR001480 -
Lac10g0789 833 Gene3D Phosphorylase Kinase; domain 1 542 642 - -
Lac10g0789 833 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 531 642 - -
Lac10g0789 833 CDD B_lectin 80 198 IPR001480 -
Lac10g0789 833 FunFam Os07g0541700 protein 643 727 - -
Lac10g0789 833 SMART ntp_6 399 474 IPR003609 -
Lac10g0789 833 Gene3D Transferase(Phosphotransferase) domain 1 643 716 - -
Lac10g0789 833 ProSiteProfiles PAN/Apple domain profile. 388 475 IPR003609 -
Lac10g0789 833 SUPERFAMILY alpha-D-mannose-specific plant lectins 108 262 IPR036426 -
Lac10g0789 833 ProSiteProfiles Protein kinase domain profile. 567 833 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0789 833 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 65 800 - -
Lac10g0789 833 Pfam D-mannose binding lectin 121 224 IPR001480 -
Lac10g0789 833 CDD PAN_AP_plant 384 475 - -
Lac10g0789 833 ProSiteProfiles Bulb-type lectin domain profile. 73 195 IPR001480 -
Lac10g0789 833 Pfam S-locus glycoprotein domain 257 367 IPR000858 GO:0048544(InterPro)
Lac10g0789 833 PIRSF SRK 46 712 IPR024171 GO:0004674(InterPro)
Lac10g0789 833 PIRSF SRK 713 833 IPR024171 GO:0004674(InterPro)
Lac10g0789 833 ProSitePatterns Serine/Threonine protein kinases active-site signature. 688 700 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g0789 833 Pfam Protein tyrosine and serine/threonine kinase 569 716 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g0789 833 SUPERFAMILY Protein kinase-like (PK-like) 552 808 IPR011009 -
Lac10g0789 833 Pfam PAN-like domain 399 460 IPR003609 -
Lac10g0789 833 Gene3D - 68 195 IPR036426 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0789 Lac-Chr10:6199343 Lac10g0791 Lac-Chr10:6215732 2.0e-312 dispersed
Lac10g0788 Lac-Chr10:6186605 Lac10g0789 Lac-Chr10:6199343 7.30E-289 tandem
Lac10g0789 Lac-Chr10:6199343 Lac10g0790 Lac-Chr10:6207560 2.50E-307 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85659 PF07714 PK_Tyr_Ser-Thr 3.20E-32 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0789 - - - 0.0