Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0790 ATGAAATTCAAAAACAATTGCAGCTTTTCATCTCGTCTTCTTCTTCTTCTTCTTTCATTTACATGCTTCTCTTCAAGATTTTGCTTTGGCAGCGACACCATCACATCAACAAATTTCATCAAAGACCCTGCAACCATTATATCCAGTGGCAGTGTCTTCAGGTTGGGATTCTTCACCCCTGTTAACTCTACCCGCCGATATGTCGGAATTTGGTTCCAAAACATTTCCCCACAAACTCCGGTATGGGTCGCAAACAGAGACAATCCTCTCAATGACACTTCTGGAATCTTCACTGTTTCCAAGGATGGGAATCTTGTCGTCTTAGATTCAAACAACAACACCCTTTGGTCTTCAAATGTTTCTTCCTCTGCATCCAACACAACCGCCCGAATTTTAGATTCGGGTAACCTTGTTTTGGAAGATGCTACTTCCGGGATGGTTATATGGGAGAGTTTCAAACATCCTTCTGATAAATTCTTGACTTCCATGAAAATTATGACAAACGCCAGAACTAAAGAGAAGGTTGAGTTTGTCTCATGGACCTCGCCTTCTGATCCATCTACAGGAAAATTCTCCTTTGTGTTGGATGTTGACAATATTCCTGAAGTTGCCATTTTGAACGGCCCCAACACTTATTGGCGGTCTGGTCCATGGAACGGTCAGTCTTTTATTGGAATTCCTGAAATGAGCTCTACTTATCTCACTGGGTATAACCTCGTAATCGAAGACCAAACTTACACGCTATCTCTTGCTTATACTTACGACATTCGAGAATTTGCTTATTTGTTTTTGAGCTCTGAAGGGAATATTGAGCAAGCGAATTGGGATGTTGAGAAGGAGCAGTGGGTGGCTAGTTGGTTGGCTCGAAAAACAGAGTGTGATTTCTATGGAACTTGTGGGGCTTTTGGGATTTGTAATGCAAAAGCATATCCTGTTTGCAGTTGTTTAAGAGGGTTTAAGCCAATGCAGGAAGAGGAATGGTATCGAGGAAATTGGAGTGGTGGATGTGTGAGAAAGACGTCGTTGAAGTGTGAGAAGTTGAACAGCTCTAGCTCTGAGGAAGATGGGTTTTTGAAAATGGAAATGGTTAAAGTTCCATTTTTGGCAGAGTGGTCTAATTCATCTGCTTCAATCGATGATTGCAGACGCGAGTGCATGGGAAATTGTTCGTGCAGTGCTTATGCATATGAAAATGGCATTCGTTGCATGCTATGGAGAAGAGACTTGATTGATATACAAAAGTTTGAGAGCGGCGGAGCTGATCTTTACATTCGAATGGCACATGCAGATTTAGATACAAATAGTGTAAGAGGCAAGAAAGGAATTGTTATTATTATCGCCATAGTGCTACCAGCAACAGCAACGCTTGTCATCTTCATCATTGCCATATACTTTTGGTGGAAATGGAAGACTAACAAAAAGGATAAGAAGATAACTACGATCTCTAGTGAAAAAGAAAAGATTTTGAAACAGACAAGGTATATTGATAACATGATTGAGGATGCTGTCAAACTTGAGGAGCTACCTCTTTATGATTTTGAGAAGCTAGCAATTGCAACCAACAACTTTGATTTAAGAAACAAGCTTGGACAGGGTGGCTTTGGTCCAGTATATAAGGGAAAATTGGTAGATGGACCAGAAATAGCTGTAAAGAGGCTTTCGAGAGCCTCGAATCAAGGATATGAAGAATTTATAAATGAAGTGAGAGTGATCTCAAAACTACAACATAGAAATCTTGTGCGACTTTTTGGTTGTTGCATCGAAGGAGAAGAGAAGATGTTAGTATATGAGTATATGCCCAACCTAAGTTTGGATGCTTTAATCTTTGGCTCTCCCAAACACGAACTTTTGGATTGGAGAAAAAGATTTAATATTATCGATGGAATTGCTCGAGGTCTTCTTTACCTTCATAGAGATTCAAGATTGAAAATCATTCATAGAGATCTCAAGGCAAGTAATATTTTATTAGACAAAGATTTGAATCCTAAAATTTCAGACTTCGGCATGGCAAGAATTTTTTGTGGCAACGAAGTTCAAGCAAACACTTTAAGAATTGTTGGAACTTATGAATATATGTCTCCTGAGTATGCAATGCAAGGTCAATTTTCAGAGAAATCAGATGTGTTTAGTTTTGGAGTTTTAATACTTGAAATTATAAGTGGCAAAAGAAATACAGGATTCTACCAACATGAAAACGTGATAAGCTTATTGGAACTTGTATGGAAATTGTGGATGGAAGACGATTTTATTCAATTGATTGAACCGACGATATATGAATTATGCTACCAATCAGAGATCTTGAGATGCATTCACGTGGGACTCTTATGTGTTCAAGAACTTAGAGATGATAGACCAAATGTTTCCACTATCATCTCAATGCTTAATAGTGAAATTGTTGATCTTCCATCTCCAAAGCAACCTGGTTTTATTGGTAGACCACATGAAAGTAGAACAGGATCATCCCAACAAAGTTTAGATAAATTTTCTGTAAATACTGTTACACTAACCACTGTTACAGCTCGATAG 2526 38.68 MKFKNNCSFSSRLLLLLLSFTCFSSRFCFGSDTITSTNFIKDPATIISSGSVFRLGFFTPVNSTRRYVGIWFQNISPQTPVWVANRDNPLNDTSGIFTVSKDGNLVVLDSNNNTLWSSNVSSSASNTTARILDSGNLVLEDATSGMVIWESFKHPSDKFLTSMKIMTNARTKEKVEFVSWTSPSDPSTGKFSFVLDVDNIPEVAILNGPNTYWRSGPWNGQSFIGIPEMSSTYLTGYNLVIEDQTYTLSLAYTYDIREFAYLFLSSEGNIEQANWDVEKEQWVASWLARKTECDFYGTCGAFGICNAKAYPVCSCLRGFKPMQEEEWYRGNWSGGCVRKTSLKCEKLNSSSSEEDGFLKMEMVKVPFLAEWSNSSASIDDCRRECMGNCSCSAYAYENGIRCMLWRRDLIDIQKFESGGADLYIRMAHADLDTNSVRGKKGIVIIIAIVLPATATLVIFIIAIYFWWKWKTNKKDKKITTISSEKEKILKQTRYIDNMIEDAVKLEELPLYDFEKLAIATNNFDLRNKLGQGGFGPVYKGKLVDGPEIAVKRLSRASNQGYEEFINEVRVISKLQHRNLVRLFGCCIEGEEKMLVYEYMPNLSLDALIFGSPKHELLDWRKRFNIIDGIARGLLYLHRDSRLKIIHRDLKASNILLDKDLNPKISDFGMARIFCGNEVQANTLRIVGTYEYMSPEYAMQGQFSEKSDVFSFGVLILEIISGKRNTGFYQHENVISLLELVWKLWMEDDFIQLIEPTIYELCYQSEILRCIHVGLLCVQELRDDRPNVSTIISMLNSEIVDLPSPKQPGFIGRPHESRTGSSQQSLDKFSVNTVTLTTVTAR 841
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6207560 6210630 + Lag0024835.1 Lac10g0790 583321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0790 841 CDD B_lectin 37 155 IPR001480 -
Lac10g0790 841 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 599 802 - -
Lac10g0790 841 Gene3D - 28 153 IPR036426 -
Lac10g0790 841 Pfam Domain of unknown function (DUF3403) 796 841 IPR021820 GO:0004674(InterPro)
Lac10g0790 841 SUPERFAMILY Protein kinase-like (PK-like) 505 794 IPR011009 -
Lac10g0790 841 FunFam receptor-like serine/threonine-protein kinase SD1-8 496 598 - -
Lac10g0790 841 SMART serkin_6 523 799 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0790 841 ProSiteProfiles Bulb-type lectin domain profile. 31 152 IPR001480 -
Lac10g0790 841 CDD PAN_AP_plant 340 427 - -
Lac10g0790 841 ProSitePatterns Serine/Threonine protein kinases active-site signature. 644 656 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g0790 841 ProSiteProfiles PAN/Apple domain profile. 344 427 IPR003609 -
Lac10g0790 841 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 20 808 - -
Lac10g0790 841 ProSiteProfiles Protein kinase domain profile. 523 799 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0790 841 SMART ntp_6 352 426 IPR003609 -
Lac10g0790 841 Gene3D Transferase(Phosphotransferase) domain 1 599 801 - -
Lac10g0790 841 Pfam Protein tyrosine and serine/threonine kinase 525 740 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g0790 841 CDD STKc_IRAK 529 795 - -
Lac10g0790 841 PIRSF SRK 4 841 IPR024171 GO:0004674(InterPro)
Lac10g0790 841 SMART blect_4 37 155 IPR001480 -
Lac10g0790 841 Gene3D Phosphorylase Kinase; domain 1 481 598 - -
Lac10g0790 841 Pfam D-mannose binding lectin 79 180 IPR001480 -
Lac10g0790 841 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 27 152 - -
Lac10g0790 841 Pfam S-locus glycoprotein domain 213 322 IPR000858 GO:0048544(InterPro)
Lac10g0790 841 Pfam PAN-like domain 351 412 IPR003609 -
Lac10g0790 841 SUPERFAMILY alpha-D-mannose-specific plant lectins 79 220 IPR036426 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0785 Lac-Chr10:6181258 Lac10g0790 Lac-Chr10:6207560 4.00E-171 dispersed
Lac10g0790 Lac-Chr10:6207560 Lac10g0793 Lac-Chr10:6237608 0.00E+00 dispersed
Lac10g0789 Lac-Chr10:6199343 Lac10g0790 Lac-Chr10:6207560 2.50E-307 tandem
Lac10g0790 Lac-Chr10:6207560 Lac10g0791 Lac-Chr10:6215732 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85660 PF07714 PK_Tyr_Ser-Thr 3.10E-46 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0790 - - - 0.0