Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0792 ATGAAACCCGAAAAGACTCGCAGCTTTTCCTGTCGTGATCGGCTTCTTCTTCTTCTTCTTCCTCTTCTTTCATTCACTTGCTTCCCTTCAAGATTTTGCTTAGGCAGAGATACGATCACATCAGAAAATTTCATCAAACACCCTGAAACCATAACATCCAATGCCAGTTCCTTCGAGTTGGGATTCTTCACACCTCTCAATTCCACCTCTCGATATGTCGGAATTTGGTTCAACCAAATTTCTTTACAAACTCTAGTATGGGTTGCCAACGCAAACAAGCCCCTCAACAATAATACTTCAGGGACTTTCACCATTTCTAACGATGGAAATCTTGTCGTCTTAGATGGAAACGACAACGTTCTTTGGTCTTCAAACGTTTCTTCTTCGTCTACAACCAACACAACCGCCCAAATTCTAGACTCGGGCAACCTTGTTCTAAAAGAAACTGCTTCCGAGAAGATTCTCTGGGAAAGTTTCAAACACCCTTCCGATAAATTCTTGGCTTCCATTAAGCTTTTCACGAACACAAGAACTAGAGAGCAGGTCAAGATCACCTCTTGGAACACCCCTTCCGATCCATCCACAGGAAACTTTTCATTAACGCTTGAAGTTCTCAATATTCCCGAAGCTGTCATTTGGAATGGTCCTGTGCTTTACTGGCGATCTGGTCCATGGAACGGTCAATCTTTCATCGGATTGCCCGGTATGGAGTCTGTTTATCTCTCTGGGTTTAACCTTGTAATTGACGACCAAACTTACACACTCTCTCTCCCTTACGATTACACTATTCAAGAGTTCGCTTATTTATTTTTAACCTCGCAAGGGGACTTGGAGCAAATGTATTGGAATCCTCAAGAGAAGCGTTGGGATGTTAGTTGGTCTGCTCTGACAACACAGTGCGATTACTACGGTACTTGTGGGGCGTTTGGGATTTGTGATCCGAAAGGGTCTCCCATTTGCAGCTGTTTAAGAGGGTTTAAGCCGAAGAATGAAGAGGAATGGAATCGAGGGAATTGGAGCGGCGGATGTGTGAGAAAGACGCCATTGAAATGTGAGAAGAATATGAACAATGCGAGTGCTGATCAAGAAGTTGGGTTTGTAAGAGTGGAAAGGGTTAAACTGCCATATTTTGTGGAATGGTCTATTCTCTCTTTTACAGCAGAGATTTGCAGACAAGAGTGCTTGAACAATTGTTCGTGTAATGCTTATGCGTATGAAGATGGTATTCGTTGTATGCTATGGACAAGGGACGACTTAGTTGATATACAAAAGTTTGAGACAAGTGGAGCTGATCTTTACATTCGAATGCCATTTTCAGAATTAGATCATACAAATAATGTAAAAGACAGGAAAGGAATTATTATAGTAATCGTGCTGCCAACGACCTTTATCATCTTCATCATTGTCATATATTTTTGGTGGAAATGGAAGACTCACATCAAAGAAAAGAAGATGACATCCAAGGAAAAAGAAAAGATTTTGAAACTGACAAGGGAAGATGATATGATTGAGGATGGTATTAAACTTGAAGAGCTACCTCTTTATGATTTTGAGAAGCTTGCAATTGCAACCAACAATTTTGATCCAAGTAACAAACTTGGACAAGGTGGCTTTGGTCCAGTATACAAGGGAAAATTCTTAAATGGACAAGAAATAGCTGTAAAGAGGCTTTCGAGAGCCTCCAACCAAGGATACGAAGAATTTATAAATGAAGTGAAGGTGATTTCTAAGCTACAACATAGAAATCTTGTACGACTCTTTGGTTGTTGCATTGAAGGAGAAGAGAAGATGTTGATATATGAATACATGCCCCACCTAAGTTTGGATGCGTTAATTTTTGGCTCCCCCAAACAAGAACTTTTGGATTGGAGGAAGAGATTTAATATAATTGATGGAATTGCTCGAGGTCTTCTTTATCATCACAGGGATTCAAGATTGAAAATCACTCATAGAGATCTCAAGGCAAGTAATATTTTGTTAGACATAGACTTGAACCCTAAAATTTCAGACTTTGGCATGGCAAGAATTTTTTGTGGCAATGAAGTTCAAGCGAACACTTCAAGAGTTGTTGGAACTTATGGATATATGTCTCCAGACTATGCAATGCAAGGCCATTTTTCAGAGAAATCAGATGTTTTTAGCTTTGGAGTTTTATTGCTTGAAATTATTAGTGGGAGAAGAAATACTGGATTCTACCACCACGAATATGCCATAAGCTTATTGGAATTCGCATGGAAGTTGTGGATGGATAGGAATGTTATTCCTATAATTGAACCAACAATATAG 2286 39.68 MKPEKTRSFSCRDRLLLLLLPLLSFTCFPSRFCLGRDTITSENFIKHPETITSNASSFELGFFTPLNSTSRYVGIWFNQISLQTLVWVANANKPLNNNTSGTFTISNDGNLVVLDGNDNVLWSSNVSSSSTTNTTAQILDSGNLVLKETASEKILWESFKHPSDKFLASIKLFTNTRTREQVKITSWNTPSDPSTGNFSLTLEVLNIPEAVIWNGPVLYWRSGPWNGQSFIGLPGMESVYLSGFNLVIDDQTYTLSLPYDYTIQEFAYLFLTSQGDLEQMYWNPQEKRWDVSWSALTTQCDYYGTCGAFGICDPKGSPICSCLRGFKPKNEEEWNRGNWSGGCVRKTPLKCEKNMNNASADQEVGFVRVERVKLPYFVEWSILSFTAEICRQECLNNCSCNAYAYEDGIRCMLWTRDDLVDIQKFETSGADLYIRMPFSELDHTNNVKDRKGIIIVIVLPTTFIIFIIVIYFWWKWKTHIKEKKMTSKEKEKILKLTREDDMIEDGIKLEELPLYDFEKLAIATNNFDPSNKLGQGGFGPVYKGKFLNGQEIAVKRLSRASNQGYEEFINEVKVISKLQHRNLVRLFGCCIEGEEKMLIYEYMPHLSLDALIFGSPKQELLDWRKRFNIIDGIARGLLYHHRDSRLKITHRDLKASNILLDIDLNPKISDFGMARIFCGNEVQANTSRVVGTYGYMSPDYAMQGHFSEKSDVFSFGVLLLEIISGRRNTGFYHHEYAISLLEFAWKLWMDRNVIPIIEPTI 761
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6222306 6225817 + Lag0024837.1 Lac10g0792 583323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0792 761 SMART blect_4 42 162 IPR001480 -
Lac10g0792 761 Gene3D - 33 160 IPR036426 -
Lac10g0792 761 Pfam D-mannose binding lectin 84 187 IPR001480 -
Lac10g0792 761 SMART serkin_6 527 757 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0792 761 FunFam receptor-like serine/threonine-protein kinase SD1-8 499 602 - -
Lac10g0792 761 ProSiteProfiles Protein kinase domain profile. 527 761 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0792 761 ProSitePatterns Serine/Threonine protein kinases active-site signature. 648 660 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g0792 761 ProSiteProfiles Bulb-type lectin domain profile. 36 159 IPR001480 -
Lac10g0792 761 PIRSF SRK 9 761 IPR024171 GO:0004674(InterPro)
Lac10g0792 761 CDD PAN_AP_plant 347 437 - -
Lac10g0792 761 SMART ntp_6 361 436 IPR003609 -
Lac10g0792 761 Gene3D Transferase(Phosphotransferase) domain 1 603 761 - -
Lac10g0792 761 FunFam Lectin-domain containing receptor kinase A4.3 603 761 - -
Lac10g0792 761 SUPERFAMILY Protein kinase-like (PK-like) 509 758 IPR011009 -
Lac10g0792 761 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 28 758 - -
Lac10g0792 761 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 32 159 - -
Lac10g0792 761 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 226 IPR036426 -
Lac10g0792 761 CDD B_lectin 43 162 IPR001480 -
Lac10g0792 761 Pfam PAN-like domain 362 421 IPR003609 -
Lac10g0792 761 Pfam Protein tyrosine and serine/threonine kinase 531 727 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g0792 761 ProSiteProfiles PAN/Apple domain profile. 351 437 IPR003609 -
Lac10g0792 761 Pfam S-locus glycoprotein domain 220 330 IPR000858 GO:0048544(InterPro)
Lac10g0792 761 Gene3D Phosphorylase Kinase; domain 1 503 602 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0792 Lac-Chr10:6222306 Lac1g3267 Lac-Chr1:52510724 1.40E-174 dispersed
Lac10g0791 Lac-Chr10:6215732 Lac10g0792 Lac-Chr10:6222306 0.00E+00 tandem
Lac10g0792 Lac-Chr10:6222306 Lac10g0793 Lac-Chr10:6237608 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85662 PF07714 PK_Tyr_Ser-Thr 1.20E-41 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0792 - - - 0.0