Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0793 ATGAAACCCGAAATCTATCGAAGTTTTTCATGTGGTTTTCTTCTTCTTCTTCTTTCATTTTCCTGTTTCTGTTCAAGATTCTGCTTCGGCAGCAGCAGAGATACAATCACATCAACAAATTTCATTAAAGATCCTGCAACCATAGTTTCTAATGCCAGCTCCTTCGAGTTGGGATTCTTCACACCTGCCAACTCTTCGAACCGATATGTCGGAATTTGGTTCAACAACCAAATATCTCCACAAACTGTGATATGGGTAGCCAACCAAGACAATCCTCTCAAAGATACTTCCGGGATCCTCACAATTTCCAAAGATGGTAATCTTGTCGTCTTGGATGGAAACGACACCGTCCTTTGGTCTTCAAACGTTTCTTCTTCTGCAGCCAACACAAACGCCCGAATTCTAGATTCGGGTAACCTTGTTTTGGAAGATTCTACTTCCAAGATGGTTATATGGGAGAGTTTCAAACACCCTTCTGATAAGTTTTTACCTTTCATGAAATTGATGACAAACCCAAAAACTAAAGAGAAGGTGGAACTAACCTCATGGAACAGCCCTTCCGATCCATCCAAGGGAAACTTCTCTTTCGGGCTGAATGTTCTTCACAATCTTCCCGAAGCTGTCGTTTGGAATGGCCATAACACGTATTGGCGGTCTGGTCCATGGAGCGGTCAGGGTTTTATGGGAATACCCGACATGGATTCTATTTATCTCTCTGGATACAGCCTCGTAATTGAAGGTCAAACTTACTACTTTTCGGTCACTTATAATGAGGCCGATCCATTTGGTTACTTGTTTTTAAGCTCACAAGGGAATCTGCAAGAAATGTTCTTGGATGTTGAGGAGAAGCGTTGGGTGGCTAATTGGGTGGCTATAAAAACGCAGTGTGATCACTATGGTACTTGTGGGGCATTTGGGATCTGTAATGCTAAAGCTTCTCCTGTTTGCAGCTGTTTAAAAGGGTTCAAGCCGAAGCATGAAGATGAATGGAATCGAGGAAATTGGAGGGGTGGATGCGTGAGAGAGAAGCCCTTGCTTTGTGAGAGGTTGAACAACACTAGCAGCGCTGAGGAAGATGGATTTTTTAAAGTTGAAATGGTTAAAGTTCCATCTTTTGCAGAATGGGTTGATTCCTTTGCATCAATAGATGATTGTAGAGTCAAGTGCTTGGAGAATTGTTCGTGCAGTGCTTATGCATATGACAGTGGTATTCGTTGTATCCTCTGGAGTGGAGACTTAATTGATATACAGAAGTTTGAGAGCGGTGCAACTGATCTGTACCTTCGAATGGCATTTGCAGACTTGGATCATACAAATAATGTAAAAGACAAGAAAGGAATTATTATAGCAACCGTGCTACCAACGACCTTTATCATCTTGATCATTGCCATATCTTTTTGGTGGAAATGGAAGACTCACAAACAAGAAAAGAAGATGATATCCAAGGAAAAAGAAAAGATTTTGAAACTGACAAGGGAGGATGATATGATTGAGGATGGTATTAAACTTGAAGAGCTACCTCTTTATGATTTTGAGAAGCTTGCAATTGCAACCAACAATTTTGATCCAAGTAACAAACTTGGACAAGGTGGCTTTGGTCCAGTATACAAGGGAAAATTCTTAAATGGACAAGAAATAGCTGTAAAGAGGCTTTCGAGAGCCTCCAACCAAGGATACGAAGAATTTATAAATGAAGTGAAGGTGATTTCTAAGCTACAACATAGAAATCTTGTACGACTCTTTGGTTGTTGCATCGAAGGAGAAGAGAAGATGTTGATATATGAATACATGCCCCACCTAAGTTTGGATGCGTTAATTTTTGGGTCCCACAAACAAGAACTTTTGGATTGGAGAATGAGATTTAACATTATTGATGGAATTGCTCGAGGTCTTCTTTACCTTCATAGAGATTCGAGATTGAAAATCATTCATAGAGATCTCAAGGCAAGTAACATTTTGTTAGACAAAGACTTGAATCCTAAAATTTCAGACTTTGGAATGGCAAGAATTTTTTGTGGCAACGAAGTTCAAGAAAAAACTTTAAGAGTTGTTGGAACATATGGATATATGTCTCCAGAGTACGCAATGCAAGGTCGATTTTCAGAGAAGTCAGATGTTTTTAGCTTTGGTGTTCTATTGCTTGAAATTGTTAGTGGAAGAAGAAATACTGGATTCTACCACCATGAATATGCCATGAGCTTATTGGAATTCGCATGGAAGTTGTGGATGGAAGGCAATCTAATTGCTATAATTGAACCAACAATTTACGAATTGTGCTATGAACAAGAGATTTTGAGAAGCATTCATGTGGGGCTCTTATGCGTTCAAGAATCTGTAAATGATAGGCCAAATGTTTCCACCATTATTTCAATGCTCAATAGTGAAATCATACATCTTCCTTCTCCAAAGCAACATGGCTTTGTTGGCAGATTATATGAGAGTAACATAGAGTCATCTCAACAAAATTTAGATAAATATTCTGTAAATGGTGTTACACTTACTGCAATCATAGCTCGATAG 2520 39.25 MKPEIYRSFSCGFLLLLLSFSCFCSRFCFGSSRDTITSTNFIKDPATIVSNASSFELGFFTPANSSNRYVGIWFNNQISPQTVIWVANQDNPLKDTSGILTISKDGNLVVLDGNDTVLWSSNVSSSAANTNARILDSGNLVLEDSTSKMVIWESFKHPSDKFLPFMKLMTNPKTKEKVELTSWNSPSDPSKGNFSFGLNVLHNLPEAVVWNGHNTYWRSGPWSGQGFMGIPDMDSIYLSGYSLVIEGQTYYFSVTYNEADPFGYLFLSSQGNLQEMFLDVEEKRWVANWVAIKTQCDHYGTCGAFGICNAKASPVCSCLKGFKPKHEDEWNRGNWRGGCVREKPLLCERLNNTSSAEEDGFFKVEMVKVPSFAEWVDSFASIDDCRVKCLENCSCSAYAYDSGIRCILWSGDLIDIQKFESGATDLYLRMAFADLDHTNNVKDKKGIIIATVLPTTFIILIIAISFWWKWKTHKQEKKMISKEKEKILKLTREDDMIEDGIKLEELPLYDFEKLAIATNNFDPSNKLGQGGFGPVYKGKFLNGQEIAVKRLSRASNQGYEEFINEVKVISKLQHRNLVRLFGCCIEGEEKMLIYEYMPHLSLDALIFGSHKQELLDWRMRFNIIDGIARGLLYLHRDSRLKIIHRDLKASNILLDKDLNPKISDFGMARIFCGNEVQEKTLRVVGTYGYMSPEYAMQGRFSEKSDVFSFGVLLLEIVSGRRNTGFYHHEYAMSLLEFAWKLWMEGNLIAIIEPTIYELCYEQEILRSIHVGLLCVQESVNDRPNVSTIISMLNSEIIHLPSPKQHGFVGRLYESNIESSQQNLDKYSVNGVTLTAIIAR 839
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6237608 6240995 + Lag0024838.1 Lac10g0793 583324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0793 839 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 21 805 - -
Lac10g0793 839 ProSiteProfiles PAN/Apple domain profile. 347 431 IPR003609 -
Lac10g0793 839 Pfam PAN-like domain 356 416 IPR003609 -
Lac10g0793 839 Gene3D Transferase(Phosphotransferase) domain 1 597 799 - -
Lac10g0793 839 ProSitePatterns Serine/Threonine protein kinases active-site signature. 642 654 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g0793 839 Pfam Protein tyrosine and serine/threonine kinase 525 789 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g0793 839 FunFam receptor-like serine/threonine-protein kinase SD1-8 493 596 - -
Lac10g0793 839 SUPERFAMILY alpha-D-mannose-specific plant lectins 83 189 IPR036426 -
Lac10g0793 839 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Lac10g0793 839 SMART blect_4 39 158 IPR001480 -
Lac10g0793 839 SUPERFAMILY Hairpin loop containing domain-like 359 418 - -
Lac10g0793 839 CDD STKc_IRAK 527 793 - -
Lac10g0793 839 CDD B_lectin 39 158 IPR001480 -
Lac10g0793 839 ProSiteProfiles Protein kinase domain profile. 521 808 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0793 839 Coils Coil 473 493 - -
Lac10g0793 839 Pfam S-locus glycoprotein domain 217 325 IPR000858 GO:0048544(InterPro)
Lac10g0793 839 Pfam Domain of unknown function (DUF3403) 794 839 IPR021820 GO:0004674(InterPro)
Lac10g0793 839 Pfam D-mannose binding lectin 82 183 IPR001480 -
Lac10g0793 839 CDD PAN_AP_plant 344 431 - -
Lac10g0793 839 Gene3D - 29 156 IPR036426 -
Lac10g0793 839 SUPERFAMILY Protein kinase-like (PK-like) 503 792 IPR011009 -
Lac10g0793 839 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 29 155 - -
Lac10g0793 839 PIRSF SRK 6 839 IPR024171 GO:0004674(InterPro)
Lac10g0793 839 SMART ntp_6 356 430 IPR003609 -
Lac10g0793 839 SMART serkin_6 521 797 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0793 839 ProSiteProfiles Bulb-type lectin domain profile. 33 155 IPR001480 -
Lac10g0793 839 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 597 800 - -
Lac10g0793 839 Gene3D Phosphorylase Kinase; domain 1 497 596 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0784 Lac-Chr10:6170813 Lac10g0793 Lac-Chr10:6237608 3.80E-295 dispersed
Lac10g0787 Lac-Chr10:6183757 Lac10g0793 Lac-Chr10:6237608 6.10E-135 dispersed
Lac10g0790 Lac-Chr10:6207560 Lac10g0793 Lac-Chr10:6237608 0.00E+00 dispersed
Lac10g0791 Lac-Chr10:6215732 Lac10g0793 Lac-Chr10:6237608 0.00E+00 dispersed
Lac10g0793 Lac-Chr10:6237608 Lac1g3267 Lac-Chr1:52510724 3.60E-197 dispersed
Lac5g2414 Lac-Chr5:42790269 Lac10g0793 Lac-Chr10:6237608 6.50E-79 dispersed
Lac9g2105 Lac-Chr9:40710714 Lac10g0793 Lac-Chr10:6237608 5.30E-104 dispersed
Lac10g0792 Lac-Chr10:6222306 Lac10g0793 Lac-Chr10:6237608 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85663 PF07714 PK_Tyr_Ser-Thr 1.50E-46 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0793 - - - 0.0