Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0805 ATGCCAACGCACGCTTTCTATACCAGAGTTTCCAGAGTTTTCCGGGACCATTCTTCGCTCTCTAGGCTCCTTGTTCTTGTCACCGTTAGTGGGGGGAGCCTTGTAGCATATGCTGATGCTAGCCCAACCAATGGTGTACCCAGTATTGCATCTAAAGCCGATGTAGGTGAGAAAAAGAAGGTGGTAGTGCTTGGAACTGGTTGGGCGGGAACAAGTTTCTTGAAGAATATTAAAGATCCCTCCTATGAGGTTCAAGTGATATCACCTCGTAATTACTTTGCATTCACTCCATTATTGCCAAGTGTTACATGTGGTACAGTGGAAGCCCGTAGCATTGTTGAACCAATTCGCAACATTGTGAGGAAGAAAAGGGTAGACATCAGATTCAATGAAGCGGAATGCTACAAGATTGATGCTGAAAATAGAAAACTCTATTGTCGATCTAATGAAAACAACAATCTGAATGGGAAAAAGGAATTTGTTGTGGATTATGACTACCTAGTGATAGCTGTTGGAGCACAAGTTAATACATTCAATACTCCTGGCGTCGTGGAGAATTGTCATTTTTTGAAGGAAGTGGAAGATGCTCAGAGAATACGAAGAACTGTAATTGATTGCTTTGAGAGGGCTAGTCTGCCTACCCTGAATGAAGAAGATAGAAAGAAAATTCTTCATTTTGCTGTTGTTGGTGGTGGCCCCACTGGTGTGGAATTTGCAGCAGAACTTCATGATTTTGTTAATGAAGACTTGGTCAGATTATATCCTGGACTTAAAGAATTTGTGAAAATTACTCTTCTCGAGGCAGGAGATCATATCTTAAACATGTTTGACAAAAGAATTACAGCTTTTGCTGAAGAAAAATTCCGTAGAGATGGTATTGATGTTAAGACAGGATCAATGGTAATCAAGGTAACTGATAAAGAGATTTCTACCAAAGAAATGAAGAATGGAGAAATATCTTCTATGCCCTATGGAATGACAGTATGGTCAACTGGTATAGGAACTCGTCCGATCATAAAGGACTTTATGACACAGATTGGTCAGGCTAACAGGCGTGCTTTGGCAACCGATGAATGGCTTCGGGTTGAGGGATGTGACAATGTATATGCACTTGGTGACTGCGCTACTATAAATCAGCGAAAAGTCATGGAAGATATTTCAGTAATTTTTAACAAGGCAGACATAGACAATTCTGGGACACTTACATTAAAAGAATTTCAAGAAGTCATTGATGACATATGTGAAAGATATCCCCAAGTGGAGCTATATTTGAAGAATAAGCAGATGAACGACATTGTTGATCTTTTGAAAGGATCCAAAGGGGATGTGGCAAAGGAGTCGATCGAATTAAACATTGAAGAGTTTAAATCAGCTCTTTCTCAAGTTGATTCTCAAATGAAAAACCTTCCTGCTACCGCACAGGTGGCTGCGCAACAAGGTGCATATCTTGCCCATTGTTTTAATCGCATGGAAGAGTGCGAACAAAATCCTGAAGGTCCTCTTAGGTTTAGGGGATCAGGACGCCACCGTTTTCGGCCCTTTAGGTACAAACATCTTGGACAATTCGCACCGCTGGGAGGAGAACAGACGGCTGCACAACTTCCTGGGGATTGGGTGTCCATTGGCCACAGCTCTCAGTGGCTCTGGTACTCTGTCTATGCAAGTAAGCAAGTTAGTTGGCGGACAAGAGCACTGGTGATTACGGATTGGACAAGACGTTTTGTTTTTGGGAGAGATTCGAGTCGCATTTGA 1752 41.89 MPTHAFYTRVSRVFRDHSSLSRLLVLVTVSGGSLVAYADASPTNGVPSIASKADVGEKKKVVVLGTGWAGTSFLKNIKDPSYEVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPIRNIVRKKRVDIRFNEAECYKIDAENRKLYCRSNENNNLNGKKEFVVDYDYLVIAVGAQVNTFNTPGVVENCHFLKEVEDAQRIRRTVIDCFERASLPTLNEEDRKKILHFAVVGGGPTGVEFAAELHDFVNEDLVRLYPGLKEFVKITLLEAGDHILNMFDKRITAFAEEKFRRDGIDVKTGSMVIKVTDKEISTKEMKNGEISSMPYGMTVWSTGIGTRPIIKDFMTQIGQANRRALATDEWLRVEGCDNVYALGDCATINQRKVMEDISVIFNKADIDNSGTLTLKEFQEVIDDICERYPQVELYLKNKQMNDIVDLLKGSKGDVAKESIELNIEEFKSALSQVDSQMKNLPATAQVAAQQGAYLAHCFNRMEECEQNPEGPLRFRGSGRHRFRPFRYKHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTRALVITDWTRRFVFGRDSSRI 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6387785 6392884 - Lag0024850.1 Lac10g0805 583336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0805 583 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 427 582 - -
Lac10g0805 583 Pfam Pyridine nucleotide-disulphide oxidoreductase 59 379 IPR023753 GO:0016491(InterPro)
Lac10g0805 583 ProSitePatterns EF-hand calcium-binding domain. 394 406 IPR018247 -
Lac10g0805 583 Coils Coil 445 465 - -
Lac10g0805 583 SUPERFAMILY FAD/NAD(P)-binding domain 58 277 IPR036188 -
Lac10g0805 583 ProSiteProfiles EF-hand calcium-binding domain profile. 381 416 IPR002048 GO:0005509(InterPro)
Lac10g0805 583 SUPERFAMILY FAD/NAD(P)-binding domain 217 378 IPR036188 -
Lac10g0805 583 SUPERFAMILY EF-hand 374 469 IPR011992 -
Lac10g0805 583 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 50 410 - -
Lac10g0805 583 Pfam NDH2 C-terminal domain 518 579 IPR054585 -
Lac10g0805 583 Gene3D - 50 416 - -
Lac10g0805 583 Gene3D - 424 582 - -
Lac10g0805 583 PRINTS FAD-dependent pyridine nucleotide reductase signature 225 243 - -
Lac10g0805 583 PRINTS FAD-dependent pyridine nucleotide reductase signature 61 80 - -
Lac10g0805 583 PRINTS FAD-dependent pyridine nucleotide reductase signature 164 182 - -
Lac10g0805 583 PANTHER NADH DEHYDROGENASE 44 583 IPR045024 GO:0003954(InterPro)|GO:0006116(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0805 Lac-Chr10:6387785 Lac9g2123 Lac-Chr9:40850736 7.00E-256 dispersed
Lac10g0805 Lac-Chr10:6387785 Lac12g0676 Lac-Chr12:7078655 3.40E-234 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0805 K03885 - csv:101204145 1109.36