Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0846 ATGAGTTGCATCTGCTTCGGCTCCTCTACTTTGGAGAAGAAACGGGTCTCTACTCGTGCTGAGGAGGAGTTGGACATTGACTTGCTTGAGAATGTTAAACAATTCTCCTTCAATGAATTAAGATCTGCGACAGAGAATTTCCATTCGAACAATAAAATTGGACGTGGAGGCTTCGGAATTGTTTACAAGGGCACATTAAGGACTGGAGTGCAGGTTGCAGTAAAGAAACTTTCTATAGAGTCTAAGCAAGGGGCTCGGGAATTTTTGACAGAGATCAGAACCATTTCAAATGTCAAGCATCCAAATCTTGTCGAGTTGATTGGATGCTGTTCTCAAAGAACTAACCGGATCTTGGTCTATGAATATCTGGAAAATAATAGTCTCGACCATGCTTTGTTAGATTCTAAGAATACAAGTGTCCAACTAGATTGGGGGAAGAGGTCCTCTATTTGCATTGGCACTGCTAGGGGCCTCCAATTTCTTCACGAGGAACTTGTTCCACGTATTGTGCATAGAGACATCAAGGCTAGTAATATACTCCTTGATAGGGACTTCAATCCGAAAATTGGTGACTTCGGATTAGCTAAACTTTTCCCAGATGATATTACTCACATTAGCACAAGAATTGCAGGAACAACCGGTTATTTGGCTCCAGAGTATGCACTGGGAGGTCAGCTAACTTTGAAGGCAGATGTATATAGCTTTGGAGTCCTCATCCTTGAAATAGTTAGTGGTAGACGTAGCAGTACAGTTTTCAGTGGAGAAATACCAATACTCCTGCTGGAACGGGTGTGGCAATTGTATGAAGAAGGAAAACTTTTAGATATAGTGGATCCTAGACTAGGAGATTACCCTCAGGAAGAAGTGCTTAGGTACATGAAAGTGGCTCTTTTCTGCACACAAGCTGCTGCAAGTCGACGGCCAATGATGAGTCAAGTTGTCGACATGCTTACAAAGAATATCAAACTTAACGAGAAGCTACTTACCGCCCCGGGGTTCTACGGAGGCTCGAGTGACGCTTCTATGAGCAAGAAGACCTCCAACACTTCCACTAGCAACGAGGTATGCTCCGCAGTCATCTCTATAACTCAAATCACCCCCAGATGA 1107 43.36 MSCICFGSSTLEKKRVSTRAEEELDIDLLENVKQFSFNELRSATENFHSNNKIGRGGFGIVYKGTLRTGVQVAVKKLSIESKQGAREFLTEIRTISNVKHPNLVELIGCCSQRTNRILVYEYLENNSLDHALLDSKNTSVQLDWGKRSSICIGTARGLQFLHEELVPRIVHRDIKASNILLDRDFNPKIGDFGLAKLFPDDITHISTRIAGTTGYLAPEYALGGQLTLKADVYSFGVLILEIVSGRRSSTVFSGEIPILLLERVWQLYEEGKLLDIVDPRLGDYPQEEVLRYMKVALFCTQAAASRRPMMSQVVDMLTKNIKLNEKLLTAPGFYGGSSDASMSKKTSNTSTSNEVCSAVISITQITPR 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6781326 6787554 - Lag0024891.1 Lac10g0846 583377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0846 368 FunFam Putative LRR receptor-like serine/threonine-protein kinase 123 329 - -
Lac10g0846 368 CDD STKc_IRAK 53 319 - -
Lac10g0846 368 FunFam cold-responsive protein kinase 1 18 122 - -
Lac10g0846 368 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g0846 368 SMART serkin_6 47 310 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0846 368 Gene3D Transferase(Phosphotransferase) domain 1 123 329 - -
Lac10g0846 368 ProSitePatterns Protein kinases ATP-binding region signature. 53 76 IPR017441 GO:0005524(InterPro)
Lac10g0846 368 ProSiteProfiles Protein kinase domain profile. 47 323 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0846 368 Pfam Protein tyrosine and serine/threonine kinase 49 317 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g0846 368 SUPERFAMILY Protein kinase-like (PK-like) 29 317 IPR011009 -
Lac10g0846 368 Gene3D Phosphorylase Kinase; domain 1 16 122 - -
Lac10g0846 368 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 29 350 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0846 Lac-Chr10:6781326 Lac10g3206 Lac-Chr10:46198050 4.00E-116 dispersed
Lac10g0846 Lac-Chr10:6781326 Lac12g0842 Lac-Chr12:8764084 2.30E-87 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85664 PF07714 PK_Tyr_Ser-Thr 5.80E-46 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0846 - - - 0.0