Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0885 ATGGAGGAAGATGCTAATTCCTGGTTAAGAAGAACCAAGTTTTCTCACACGATATGCTACCGTTTAGAGTCCTTACAATTGGCTTCCTTTCCTGTCACCGCTCAGCCACCACTCAATTCAGTTGTGCAATCAAAAGCTTTCACGGCTCCTTCTCATCATAGATCTTCCCTTCGTTATAACCTACACATTGAGAACGGTTACACTCTCAACAAGCATAGGTCTCTGTCTCCGCCTCCACAAACTAAACTCTCTGGTTCATTTAAGGATGCACAAACCGATCAGAAGCGATTTTCAACTCCACAGCCTCGGAGGAGAGAACACAGAAAAGAGAAGGGTAAAAGGCTATTCAGTAAAGAAGCTAAGGTGCACAATTCCTCAAGGGAAGAGAAGTTAAGAAGCCCTCTGAGGCATCTTGCCTCATTTAAGGGCAACCAGAAATCCAAGTTCAGGAAGGAATCTTCTTGGACCAAGTTTTTTGAGCACAGTAGAGGAAAGGTCACTGCTGTTGAAGCAGTGGATGAATTGTCTGTTGACTTGTCCAAGTTGTTTCTTGGGCATAGATTTGCTTATGGAGCTCATAGTCGGCTTTACCATGGAATTTACAATGATAAAGTTGTTGCTGTTAAGATCATCAATTTACCGGACGATGACGAAAATGGAGATCTCGCAGGTCGCTTAACAAAGCAGTTTGGTAGGGAAGTAACCCTTTTGTCTCGTCTCCACCATCCGAATGTTATAAAGTTGGTATCAGCTTGTAGAAAGCCACCCGTTTATTGTATCATCACGGAGTATCTATCTCAGGGTTCCTTAAGGGCATATCTACACAAACTTGAAAACAAATCTCTCCCACTGCAAAAACTGATTGCCATCGCCTTGGACATCGCTCGTGGGATGGAATACATTCACTCACAAGGCATCATTCATCGGGATCTCAAACCTGAAAACGTTCTTATCGATCAAGACTTTTGCCTAAAGATCGCCGATTTCGGCATCGCTTGTGAGGAGGCACATTGTGATATTTTGGCCGATGACCCTGGAACTTACCGTTGGATGGCCCCCGAGATGATCAGACGTAAACCTTACAGACGAAAGGTGGATGTCTACAGCTTTGGACTTATTCTGTGGGAATTGGTGGCTGGAACAATCCCTTATGAGGATATGACTCCCATCCAAGCAGCTTATGCAGTTGTAAATAAGAATATTAGACCGATCATCCCGAGGGAGTGTCCTCCGGTGATGCGGGCGTTGATCGAGCAATGTTGGTCAGTGCAACCGGAAAAGAGGCCGGAGTTTTGGCAGGTGGTGAAAGTACTAGAGCAAGTTGAGAGTTCAGTTGAGGGAGATGGTACATTGATGAATGTAGAGAAGAAGGCAAGTTGGGAAGATCACAAGAAAGGTCTAAAGCATTGGATACAAAAGCTTGGTCCTCTTCATTCTCAGACTTCTGTCACCTCCAGATCTAAATTCATATGA 1473 44.4 MEEDANSWLRRTKFSHTICYRLESLQLASFPVTAQPPLNSVVQSKAFTAPSHHRSSLRYNLHIENGYTLNKHRSLSPPPQTKLSGSFKDAQTDQKRFSTPQPRRREHRKEKGKRLFSKEAKVHNSSREEKLRSPLRHLASFKGNQKSKFRKESSWTKFFEHSRGKVTAVEAVDELSVDLSKLFLGHRFAYGAHSRLYHGIYNDKVVAVKIINLPDDDENGDLAGRLTKQFGREVTLLSRLHHPNVIKLVSACRKPPVYCIITEYLSQGSLRAYLHKLENKSLPLQKLIAIALDIARGMEYIHSQGIIHRDLKPENVLIDQDFCLKIADFGIACEEAHCDILADDPGTYRWMAPEMIRRKPYRRKVDVYSFGLILWELVAGTIPYEDMTPIQAAYAVVNKNIRPIIPRECPPVMRALIEQCWSVQPEKRPEFWQVVKVLEQVESSVEGDGTLMNVEKKASWEDHKKGLKHWIQKLGPLHSQTSVTSRSKFI 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7097697 7099483 - Lag0024930.1 Lac10g0885 583416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0885 490 MobiDBLite consensus disorder prediction 112 131 - -
Lac10g0885 490 CDD STKc_MAP3K-like 191 438 - -
Lac10g0885 490 SMART serkin_6 182 441 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0885 490 Gene3D Transferase(Phosphotransferase) domain 1 267 484 - -
Lac10g0885 490 PANTHER SERINE-THREONINE PROTEIN KINASE 103 440 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Lac10g0885 490 MobiDBLite consensus disorder prediction 70 131 - -
Lac10g0885 490 PRINTS Tyrosine kinase catalytic domain signature 409 431 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g0885 490 PRINTS Tyrosine kinase catalytic domain signature 300 318 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g0885 490 PRINTS Tyrosine kinase catalytic domain signature 262 275 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g0885 490 PRINTS Tyrosine kinase catalytic domain signature 346 356 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g0885 490 PRINTS Tyrosine kinase catalytic domain signature 365 387 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g0885 490 Gene3D Phosphorylase Kinase; domain 1 170 266 - -
Lac10g0885 490 Pfam Protein tyrosine and serine/threonine kinase 187 438 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g0885 490 FunFam serine/threonine-protein kinase HT1 267 459 - -
Lac10g0885 490 ProSitePatterns Serine/Threonine protein kinases active-site signature. 306 318 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g0885 490 SUPERFAMILY Protein kinase-like (PK-like) 156 438 IPR011009 -
Lac10g0885 490 MobiDBLite consensus disorder prediction 70 97 - -
Lac10g0885 490 ProSiteProfiles Protein kinase domain profile. 182 441 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0885 Lac-Chr10:7097697 Lac1g3168 Lac-Chr1:51859632 3.00E-90 dispersed
Lac11g2016 Lac-Chr11:35689678 Lac10g0885 Lac-Chr10:7097697 2.90E-22 transposed
Lac6g2164 Lac-Chr6:37883945 Lac10g0885 Lac-Chr10:7097697 1.10E-27 transposed
Lac8g0205 Lac-Chr8:2314970 Lac10g0885 Lac-Chr10:7097697 4.30E-59 transposed
Lac1g3332 Lac-Chr1:53046788 Lac10g0885 Lac-Chr10:7097697 4.80E-189 wgd
Lac10g0885 Lac-Chr10:7097697 Lac7g0580 Lac-Chr7:4601423 5.60E-06 wgd
Lac10g0885 Lac-Chr10:7097697 Lac7g0758 Lac-Chr7:6039918 1.80E-26 wgd
Lac10g0885 Lac-Chr10:7097697 Lac9g2245 Lac-Chr9:41820390 9.40E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85666 PF07714 PK_Tyr_Ser-Thr 6.20E-61 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0885 - - - 0.0