Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0894 ATGCAACGCACTGATCAAGAAATGAAGCCCACACTTATTCAGCCACAGAACAAAGAGAAATGCCCTCGCTGTGACTCTTTCAACACCAAGTTTTGTTATTACAACAACTACAGCCTCTCTCAGCCTCGTTACTTCTGTAAGTCTTGTCGAAGGTACTGGACTCAAGGCGGCACTCTCCGTAACGTCCCCATCGGCGGCGGCTGTAGAAAGGCCAAGCGCCCAAAAACAATACCCTCTTCTTCTTCTTCTGCTGCTGTTCAGCCCTCGCCGGAGACCACCCAGAATGCGCCGCCGTCTGCTGGGGTGGAAACTGGACGAGTCTTTGGAAGTTCTTGTTTTCCGGGTGGTGGGTATTTGCCGTCGTTGGAACCGATTCAGTCTGCTTTGAACCAAACGCCGCCGCCGATTTTGATGAATCAATCTGCCGTGGATGTCGGGGTTTATTCCTTTGGATTGCCCGACCAGAATTGGGCTCATCGGAGCTTTGGTGGTGGTGATGGTGATCGTAATCCGACGTGGACTGCCATCAACGACAACAACGTGACGGATTCTTCCTCTGCAGGTAATAATAACAAAAATTTAAGTGGTGAAAGTGAAAATAATTCTTGTAATTTGGTCCAAAATCAGTGGACTCATCGTCATCGTGATCATCTGCCTGCCTATGGCCATCCTCCTTGA 678 49.41 MQRTDQEMKPTLIQPQNKEKCPRCDSFNTKFCYYNNYSLSQPRYFCKSCRRYWTQGGTLRNVPIGGGCRKAKRPKTIPSSSSSAAVQPSPETTQNAPPSAGVETGRVFGSSCFPGGGYLPSLEPIQSALNQTPPPILMNQSAVDVGVYSFGLPDQNWAHRSFGGGDGDRNPTWTAINDNNVTDSSSAGNNNKNLSGESENNSCNLVQNQWTHRHRDHLPAYGHPP 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7148683 7149360 + Lag0024939.1 Lac10g0894 583425

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0894 225 ProSiteProfiles Zinc finger Dof-type profile. 19 73 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac10g0894 225 MobiDBLite consensus disorder prediction 75 100 - -
Lac10g0894 225 MobiDBLite consensus disorder prediction 64 101 - -
Lac10g0894 225 ProSitePatterns Zinc finger Dof-type signature. 21 57 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac10g0894 225 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 8 97 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac10g0894 225 MobiDBLite consensus disorder prediction 172 201 - -
Lac10g0894 225 MobiDBLite consensus disorder prediction 162 201 - -
Lac10g0894 225 Pfam Dof domain, zinc finger 17 73 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0894 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0189 Lac-Chr10:1448443 Lac10g0894 Lac-Chr10:7148683 3.60E-26 dispersed
Lac10g0894 Lac-Chr10:7148683 Lac9g2549 Lac-Chr9:44155337 1.30E-29 dispersed
Lac10g0894 Lac-Chr10:7148683 Lac10g0895 Lac-Chr10:7156651 3.30E-28 tandem
Lac1g3338 Lac-Chr1:53080519 Lac10g0894 Lac-Chr10:7148683 1.60E-28 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g119 . . Bda02g00523 Bda09g01249 . Bpe01g00892 . . Cmo13g00654 . . Cma07g00234 . Car07g00199 Sed10g0298 . . Bhi03g00403 Tan03g2489 Cmetu04g0488 . Hepe04g1859 . . Cla01g02256 Cam01g2371 Cec04g2016 Cco04g2094 Clacu01g2391 Cmu01g2256 Cre04g1924 . . . Cone9ag1003 Lsi01g00305 Csa06g03636 . Cme08g00290 . . . . . Bpe08g00822 Bma07g00381 Bma11g00409 Sed02g0836 . Cmo07g00231 Cma13g00634 Cma18g00380 Car13g00519 Car18g00357 Cpe19g01025 . Bhi08g02284 Tan05g2435 Cmetu12g0332 Lac10g0894 Hepe07g1903 . . Cla03g00762 Cam03g0625 Cec03g0602 Cco03g0632 Clacu03g0805 Cmu03g1403 Cre03g0909 Lsi02g00765 Csa01g01242 Chy02g00289 Cme12g01335
Vvi10g120 . . . . . Bpe01g00433 . . . Cmo18g00361 Cma03g01275 Cma07g00233 Car03g01142 Car07g00198 Sed14g1465 Cpe09g00832 Cpe10g00188 Bhi03g00402 Tan03g2490 Cmetu04g2608 . Hepe04g1860 . . Cla01g02257 Cam01g2372 Cec04g2017 Cco04g2095 Clacu01g2392 Cmu01g2257 Cre04g1925 . . Cone6ag1003 . Lsi01g00304 Csa06g03637 Chy12g00922 Cme08g00289 Blo08g00207 Blo14g00399 . . . Bpe08g00380 Bma07g00382 Bma11g00410 Sed02g0836 Cmo03g01270 Cmo07g00230 . Cma18g00381 . Car18g00358 Cpe19g01026 Cpe20g00442 Bhi08g02284 Tan05g2435 Cmetu12g0332 Lac10g0894 Hepe07g1903 . . Cla03g00761 Cam03g0626 Cec03g0603 Cco03g0633 Clacu03g0804 Cmu03g1402 Cre03g0910 Lsi02g00767 Csa01g01243 Chy02g00288 Cme12g01334
Vvi17g742 . . . . . . Bma06g00234 . . . . . . . . Cpe20g00240 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma18g00167 . . . . Bhi08g01605 Tan05g3313 Cmetu12g0829 Lac10g0894 Hepe07g1903 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000183 6 5 2 3 4 8 10 7 8 6 7 7 6 7 8 9 7 3 5 7 7 7 6 11 6 8 5 8 5 3 191
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22750 PF02701 zf-Dof 5.20E-33 No_clan Lac TF