Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0915 ATGCTTCTCCCACTCTTCCTCTTCCTCTCCACCTTCCTCTCTAACCCTTCTCTTCTCTCCCTCTCCCTCTCCCAAGAAGGCCTCTATCTCCACACCATCAAGCTCTCTTTCGACGATCCAGATTCCGCCCTCCGCTCATGGAACGACCGCGACGACACTCCCTGCTCCTGGTTCGGCGTCTCTTGCGACCCCAAAACCAACTCCGTCCACTCCCTCGACCTCTCCAACACCAACATCGCCGGCCCATTTCCCTCTCTCCTTTGCCGCCTCCAGAATCTCTCCTTCCTCTCGCTTTACAACAATTCCATCAACATGTCCCTTCCCTCTCTTATTTCCGAGTGTTCCAGCCTCCAGCATCTCGACCTCTCTCAGAATCTCCTCACCGGCGAGCTTCCCACTTCGATTTCTGATCTTCCCAACCTCCGGTATTTGGATTTGACTGGGAATAACTTCTCCGGCGACATTCCGGCGAGTTTCGCCCGGTTTCGGAAGCTGGAGGTTCTGTCTCTTGTTTATAATCTTCTCGACGGGCCGGTGCCGGCGTTTCTCGGCAACATTACGTCGTTGAAGATGTTGAACCTGTCTTACAACCCGTTTGAGCTGAGCCGGATCCCGCCGGAGTTCGGGAATTTGACGAATCTTGAGGTGCTTTGGCTGACTCAGTGTAATTTGGTTGGGGAAATTCCGCAGTCTCTTGGTCGGTTGAAACGGCTGACCGATTTGGACTTGGCGTTGAATAATCTTTATGGTCCGATTCCAAAGACGCTGACGGAGTTGAGTAGTGTGGTTCAGATTGAGTTGTATAATAACTCGTTAACGGGTGAGTTGCCTTCTGGGTTTTCGAATCTGACCTCATTGCGACTGTTTGACGCGTCGATGAATGGTTTGACTGGGGCGATTCCGGATGAGTTGTGTCAGTTGCCGCTTGAGAGTCTCAATCTCTATCAGAACAAGTTTGAGGGGAAGTTACCGGAAAGCATTGCGAATTCGCCGGGTTTGTATGAGCTCAGACTTTTCAGTAACCGGCTCACCGGCGAGTTACCGCGAAATCTTGGCAAGAACTCACCGTTGAGGTGGATTGATGTTTCCGACAACCAGTTTTCCGGCGAAATCCCTGAGAATTTGTGTGAGAAGAGAGAGTTGGAGGAGCTTCTGATGATCAACAACCAGTTCTCCGGCAAGATTCCGGCGAGTTTGGGTGAGTGCGAGAGCCTGACGAGGGTGCGATTAGGTTACAACCAGCTTTCCGGCGAGGTTCCGGCGGGATTTTGGGGGCTCCCACATGTGTATCTGTTGGAGTTGGTGAGTAACTCGTTTTCTGGGGGAATTTCGGATGCCATTGCCACTGCGAAGAACCTTTCGATTTTCATCATCTCTAAGAACAACTTCACGGGCACGATTCCGGCGGAGTTGGGACGGCTGGAAAATCTTGTGAAGTTGTTAGCAACCGATAACAAATTCAATGGATCTTTGCCAGGAAGTCTTGTGAACCTTCGGCAGCTTTCGAGTTTGGATCTTCGGAATAATGAACTCACTGGAGACCTTCCCAGTGGAATCAAGTCGTGGAAGAATCTCAACGATCTCAATTTAGCAAACAATGAATTTTCAGGCGAAATCCCTGAAGAAATTGGATCATTGCCTGTTCTTAATTACCTCGATCTGTCTGGAAATCTGTTTTCTGGGAACATCCCACTTGAGTTGCAGAATTTGAAGCTCAATCTGCTCAATTTATCGAACAATCACTTGTCCGGTGAGCTTCCTCCGTTTTTAGCCAAGGGAAACTACAGAAATAGCTTTCTGGGGAATCCAGATTTGTGTGGACATTTGGAAAGATTGTGCAACAGCAAAGGTGAAGCTAAAAGCGAGGGCTATCTCTGGTTGCTGCGCTCCATCTTCTTCCTTGCCGTTGTCGTGTTTATCTTCGGCGTCGTCTGGTTTTACCTAAAATACAGGAAGTTTAAGCTGGCAAAGAGAGAAATGGAGAAGGGCAAGTGGACATTGATGTCCTTCCACAAGTTGGATTTCAGTGAATATGAGATCTTGGACTGTCTTGATGAAGACAATGTCATAGGCAGTGGATCTTCTGGTAAAGTCTACAAGGTTGTGCTCAACAATGGTGAGGCTGTTGCAGTGAAGAAGCTATTTGGAGGGATGAGGAAAGACGGCGATAAAGGCGATGTCGAGAAGGGTCAAGTTCAAGACAATGGTTTCGAAGCTGAAATCGACACTCTTGGAAAGATTAGGCACAAGAACATTGTGAAGTTGTGGTGCTGCTGCGTTACAAGAGACTACAAGCTTCTGGTCTATGAATATATGCCTAATGGAAGCTTGGGAGATTTGCTTCATAGTAGTAAAAAAGGACTGCTGGATTGGCCTACAAGGTTTAAGATAGCTTTGGATGCAGCAGAAGGCCTTTCTTATCTTCATCACGATTGCGTCCCTCCGATCGTACACCGAGACGTTAAGTCGAACAACATCTTGTTGGATGGTGATTTCGGAGCACGGTTGGCCGATTTCGGTGTAGCTAAGGTCATCGATTCAACTCCGAAGGGACCTAAATCCATGTCGGTCATCGCAGGATCTTGTGGTTACATTGCTCCAGAGTATGCTTATACACTCCGAGTTAACGAGAAAAGCGACATATACAGTTTCGGCGTGGTAATCCTCGAGCTAATAACCGGGAGGCTCCCGATCGATCCCGAGTTCGGGGAGAAAGACTTGGTGAAATGGGTGTGTTTCACATTGGATCAAGACGGGATCGACCAAGTACTAGACCCGAAACTCGACGGTTGTTTCAAGGAAGAAATATGCAGAGTCCTGAACATTGGCCTCCTCTGCACCAGCCCTCTTCCAATCAACCGCCCATCGATGAGAAAAGTGGTGAAAATGCTGCAAGAAGTTGGAGCAGAGAACCAATTCAAAACCAACAGTAAAGATGGAAAGCTAACTCCTTACTACTACGAAGATGCCTCAGATCAAGGAAGTGTAGCATAG 2994 48.26 MLLPLFLFLSTFLSNPSLLSLSLSQEGLYLHTIKLSFDDPDSALRSWNDRDDTPCSWFGVSCDPKTNSVHSLDLSNTNIAGPFPSLLCRLQNLSFLSLYNNSINMSLPSLISECSSLQHLDLSQNLLTGELPTSISDLPNLRYLDLTGNNFSGDIPASFARFRKLEVLSLVYNLLDGPVPAFLGNITSLKMLNLSYNPFELSRIPPEFGNLTNLEVLWLTQCNLVGEIPQSLGRLKRLTDLDLALNNLYGPIPKTLTELSSVVQIELYNNSLTGELPSGFSNLTSLRLFDASMNGLTGAIPDELCQLPLESLNLYQNKFEGKLPESIANSPGLYELRLFSNRLTGELPRNLGKNSPLRWIDVSDNQFSGEIPENLCEKRELEELLMINNQFSGKIPASLGECESLTRVRLGYNQLSGEVPAGFWGLPHVYLLELVSNSFSGGISDAIATAKNLSIFIISKNNFTGTIPAELGRLENLVKLLATDNKFNGSLPGSLVNLRQLSSLDLRNNELTGDLPSGIKSWKNLNDLNLANNEFSGEIPEEIGSLPVLNYLDLSGNLFSGNIPLELQNLKLNLLNLSNNHLSGELPPFLAKGNYRNSFLGNPDLCGHLERLCNSKGEAKSEGYLWLLRSIFFLAVVVFIFGVVWFYLKYRKFKLAKREMEKGKWTLMSFHKLDFSEYEILDCLDEDNVIGSGSSGKVYKVVLNNGEAVAVKKLFGGMRKDGDKGDVEKGQVQDNGFEAEIDTLGKIRHKNIVKLWCCCVTRDYKLLVYEYMPNGSLGDLLHSSKKGLLDWPTRFKIALDAAEGLSYLHHDCVPPIVHRDVKSNNILLDGDFGARLADFGVAKVIDSTPKGPKSMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELITGRLPIDPEFGEKDLVKWVCFTLDQDGIDQVLDPKLDGCFKEEICRVLNIGLLCTSPLPINRPSMRKVVKMLQEVGAENQFKTNSKDGKLTPYYYEDASDQGSVA 997
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7306255 7309394 + Lag0024960.1 Lac10g0915 583446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0915 997 Gene3D Ribonuclease Inhibitor 23 182 IPR032675 -
Lac10g0915 997 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 8 967 IPR050647 -
Lac10g0915 997 SUPERFAMILY L domain-like 25 260 - -
Lac10g0915 997 Gene3D Ribonuclease Inhibitor 258 330 IPR032675 -
Lac10g0915 997 Gene3D Ribonuclease Inhibitor 189 257 IPR032675 -
Lac10g0915 997 Pfam Protein kinase domain 687 901 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0915 997 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 772 981 - -
Lac10g0915 997 Gene3D Phosphorylase Kinase; domain 1 650 771 - -
Lac10g0915 997 FunFam Receptor-like protein kinase HSL1 308 615 - -
Lac10g0915 997 Pfam Leucine rich repeat 499 558 IPR001611 GO:0005515(InterPro)
Lac10g0915 997 Pfam Leucine rich repeat 139 198 IPR001611 GO:0005515(InterPro)
Lac10g0915 997 Pfam Leucine Rich Repeat 357 376 IPR001611 GO:0005515(InterPro)
Lac10g0915 997 Pfam Leucine Rich Repeat 309 329 IPR001611 GO:0005515(InterPro)
Lac10g0915 997 Pfam Leucine Rich Repeat 572 591 IPR001611 GO:0005515(InterPro)
Lac10g0915 997 Pfam Leucine Rich Repeat 213 235 IPR001611 GO:0005515(InterPro)
Lac10g0915 997 Pfam Leucine Rich Repeat 116 138 IPR001611 GO:0005515(InterPro)
Lac10g0915 997 Pfam Leucine Rich Repeat 264 283 IPR001611 GO:0005515(InterPro)
Lac10g0915 997 SMART serkin_6 684 950 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0915 997 FunFam Leucine-rich receptor-like protein kinase family protein 204 302 - -
Lac10g0915 997 ProSiteProfiles Protein kinase domain profile. 684 974 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0915 997 SUPERFAMILY RNI-like 204 580 - -
Lac10g0915 997 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Lac10g0915 997 Gene3D Transferase(Phosphotransferase) domain 1 772 990 - -
Lac10g0915 997 ProSitePatterns Serine/Threonine protein kinases active-site signature. 816 828 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g0915 997 ProSitePatterns Protein kinases ATP-binding region signature. 690 713 IPR017441 GO:0005524(InterPro)
Lac10g0915 997 SMART LRR_typ_2 138 161 IPR003591 -
Lac10g0915 997 SMART LRR_typ_2 186 210 IPR003591 -
Lac10g0915 997 SMART LRR_typ_2 211 235 IPR003591 -
Lac10g0915 997 SMART LRR_typ_2 498 521 IPR003591 -
Lac10g0915 997 SMART LRR_typ_2 283 307 IPR003591 -
Lac10g0915 997 SMART LRR_typ_2 90 114 IPR003591 -
Lac10g0915 997 Gene3D Ribonuclease Inhibitor 331 616 IPR032675 -
Lac10g0915 997 SMART LRR_sd22_2 235 261 - -
Lac10g0915 997 SMART LRR_sd22_2 90 107 - -
Lac10g0915 997 SMART LRR_sd22_2 498 527 - -
Lac10g0915 997 SMART LRR_sd22_2 114 140 - -
Lac10g0915 997 SUPERFAMILY Protein kinase-like (PK-like) 676 964 IPR011009 -
Lac10g0915 997 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 23 186 - -
Lac10g0915 997 FunFam Receptor-like protein kinase HSL1 668 771 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0915 Lac-Chr10:7306255 Lac5g1860 Lac-Chr5:36849506 4.20E-91 dispersed
Lac12g0527 Lac-Chr12:5678506 Lac10g0915 Lac-Chr10:7306255 1.60E-164 transposed
Lac5g2786 Lac-Chr5:46234150 Lac10g0915 Lac-Chr10:7306255 2.90E-87 transposed
Lac1g3361 Lac-Chr1:53234483 Lac10g0915 Lac-Chr10:7306255 3.80E-12 wgd
Lac10g0915 Lac-Chr10:7306255 Lac7g0715 Lac-Chr7:5779257 2.40E-26 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85667 PF00069 Pkinase 8.30E-43 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0915 - - - 0.0