Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0947 ATGATGGCAGAGATCAGAAAGAAGAATGAAGATCAAGAGGGAGGAATTAAGCTGTTTGGGACAACAATTATGTTGCAGAATCAAGTGAAAGAAGAAGAAGAAGAAGAAGAACCCAACAACAAATCAGCTGAAAAGAAGCCTGAAAAGATCATTCCTTGCCCAAGATGCAAAAGCCTCGACACCAAATTTTGTTATTTCAACAATTACAACGTTAATCAGCCAAGGCATTTCTGCAAAGGTTGTCAGCGCTACTGGACCGCCGGTGGGGCCCTCCGGAATGTCCCCGTCGGTGCCGGCCGCCGCAAGACCAAGCCTCCCTGCCGGACCTTCGCTGGCTTGCCGGAAAATTGCGTCTTTGATTCTTCCGGGATGGTCGCCGTGCAGCCCTTTGAGTTGGAGGGTATGGTGGACGACTGGCATGTCGTCGCCGCCGCCGCCGCCACACAAAGTGGTTTCCGGCAAATTTTACCGGTGAAGAGGCGGAGGGATTGCCAAGACGGTCAAACTTGTTGA 513 51.07 MMAEIRKKNEDQEGGIKLFGTTIMLQNQVKEEEEEEEPNNKSAEKKPEKIIPCPRCKSLDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPCRTFAGLPENCVFDSSGMVAVQPFELEGMVDDWHVVAAAAATQSGFRQILPVKRRRDCQDGQTC 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7533195 7533707 - Lag0024992.1 Lac10g0947 583478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0947 170 ProSitePatterns Zinc finger Dof-type signature. 53 89 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac10g0947 170 PANTHER CYCLIC DOF FACTOR 2 30 104 IPR045174 GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)
Lac10g0947 170 ProSiteProfiles Zinc finger Dof-type profile. 51 105 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac10g0947 170 Pfam Dof domain, zinc finger 49 104 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac10g0947 170 MobiDBLite consensus disorder prediction 1 20 - -
Lac10g0947 170 MobiDBLite consensus disorder prediction 27 47 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0947 Lac-Chr10:7533195 Lac7g2228 Lac-Chr7:36961972 4.50E-30 dispersed
Lac1g3410 Lac-Chr1:53595796 Lac10g0947 Lac-Chr10:7533195 3.00E-40 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22758 PF02701 zf-Dof 1.10E-31 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0947 - - - 0.0