Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0961 ATGGAGAAAAAGGGTAACATTTTAATGCATAAATACGAGCTTGGGAGGTTGCTTGGCCAGGGAACTTTTGCCAAAGTCTACCATGCTCGTAATCTCAAGTCAGGCCAGAGCGTGGCCATCAAGGTCATTGACAAAGAGAAAGTGCTGCGTGTTGGGCTGATCGATCAAATCAAGAGGGAAATCTCTGTGATGCGCCTTGTGCGCCATCCCAATGTGGTGCGGCTCTATGAGGTGATGGCTAGCAGGACCAAGATCTATTTCGCCATGGAGTATGTCAAAGGTGGCGAGCTTTTCAACAAGGTGGCTAAAGGGAGGCTCAAGGAAGATGCTGCTCGTAAGTACTTTCAGCAGCTCATTGGTGCTGTTGATTACTGCCATAGCCGTGGCGTCTACCACAGAGATATCAAGCCTGAAAATCTCCTTCTTGATGAGTTTGGGAATCTCAAGATTTCGGATTTTGGGTTGAGTGCTTTGGCTGAGTCTAGAAGGCAAGATGGGCTTCTTCATACCACTTGTGGAACCCCTGCTTATGTCGCCCCTGAAGTCATCAACAAGAAAGGTTATGATGGAGCTAAAGCTGATATCTGGTCTTCTGGGGTTGTCCTGTTTGTTCTTCTGGCTGGTTATCTCCCTTTCCACGACCCAAATCTAATGGAAATGTACAGAAAAATCTCCAGAGGAGAATTCAGATGCCCTCATTGGTTTCCCCCAGAAGTTCGCAAGCTCCTCTCAAGAATCCTCGATCCATGTCCCCACACCAGAATAAACATGGCCAAACTCATGGAAAATTACTGGTTCAAAAAGGGGTTCAAGGCAAATTTAGCAACTCAAAAACCACTTCAAATCAATGGCAACATCTCGTCTGCGAGAGACGTCCACGACGCTTTCGACGACGTCAATTCCGAGGTAAGCTCCGCCAGTGACAGCAGCATTGAGAGTGAAAGGCCACCGGTCAGACAGCATTCCTTCAATGCATTTGACATCATATCCCTCTCACCAGGATTCAACCTGTCGGGTCTGTTTGAGAGTGAACCGAATCAGAGTTCGTCGTCGCGTTTCACTACAACGAAATCGCCATCGGCGATCGTGTCGAAGTTCGAGGAAATAGCAGAGAATGAGAGGTTTGAGGTGATGGAGAAAGATGGGATAGTGAAACTGCAGGGGAGTAAACAGGGGAGGAAAGGGCAGTTGGCTATAGATGCTGAGATATTTGAAGTGACACCTTCTTTTTTTGTGGTGGAGGTGAAGAAAACTGCTGGGGACACTTTGGAATACAGGCAGTTTTACAACAAAGACATGAGGCCTTGCCTTAAGGACATTGTGTGGACTTGGGAAGGAAGTGAACAGCAGCAGCAGTCACAACAACAACAACCACAACCACAGACTCTTTAG 1392 47.27 MEKKGNILMHKYELGRLLGQGTFAKVYHARNLKSGQSVAIKVIDKEKVLRVGLIDQIKREISVMRLVRHPNVVRLYEVMASRTKIYFAMEYVKGGELFNKVAKGRLKEDAARKYFQQLIGAVDYCHSRGVYHRDIKPENLLLDEFGNLKISDFGLSALAESRRQDGLLHTTCGTPAYVAPEVINKKGYDGAKADIWSSGVVLFVLLAGYLPFHDPNLMEMYRKISRGEFRCPHWFPPEVRKLLSRILDPCPHTRINMAKLMENYWFKKGFKANLATQKPLQINGNISSARDVHDAFDDVNSEVSSASDSSIESERPPVRQHSFNAFDIISLSPGFNLSGLFESEPNQSSSSRFTTTKSPSAIVSKFEEIAENERFEVMEKDGIVKLQGSKQGRKGQLAIDAEIFEVTPSFFVVEVKKTAGDTLEYRQFYNKDMRPCLKDIVWTWEGSEQQQQSQQQQPQPQTL 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7689394 7691116 + Lag0025006.1 Lac10g0961 583492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0961 463 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0961 463 Pfam NAF domain 322 378 IPR004041 GO:0007165(InterPro)
Lac10g0961 463 SMART serkin_6 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0961 463 CDD CIPK_C 324 438 - -
Lac10g0961 463 FunFam Non-specific serine/threonine protein kinase 318 442 - -
Lac10g0961 463 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524(InterPro)
Lac10g0961 463 SUPERFAMILY Protein kinase-like (PK-like) 8 330 IPR011009 -
Lac10g0961 463 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0961 463 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g0961 463 FunFam Non-specific serine/threonine protein kinase 2 300 - -
Lac10g0961 463 ProSiteProfiles NAF domain profile. 318 342 IPR018451 GO:0007165(InterPro)
Lac10g0961 463 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 3 435 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Lac10g0961 463 Gene3D Kinase associated domain 1, KA1 323 443 - -
Lac10g0961 463 CDD STKc_SnRK3 11 265 - -
Lac10g0961 463 Gene3D Transferase(Phosphotransferase) domain 1 2 322 - -
Lac10g0961 463 FunFam Non-specific serine/threonine protein kinase 3 91 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0961 Lac-Chr10:7689394 Lac1g1796 Lac-Chr1:39560526 4.40E-168 dispersed
Lac9g2574 Lac-Chr9:44336473 Lac10g0961 Lac-Chr10:7689394 4.70E-36 transposed
Lac1g3421 Lac-Chr1:53677178 Lac10g0961 Lac-Chr10:7689394 2.30E-148 wgd
Lac10g0961 Lac-Chr10:7689394 Lac12g0763 Lac-Chr12:7976778 9.50E-18 wgd
Lac10g0961 Lac-Chr10:7689394 Lac7g0679 Lac-Chr7:5439043 3.80E-87 wgd
Lac10g0961 Lac-Chr10:7689394 Lac9g2169 Lac-Chr9:41161338 4.00E-28 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85669 PF00069 Pkinase 1.20E-71 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0961 K07198 - csv:101206082 766.148