Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0971 ATGATGGTTTCTGACGTCCCGATTTGCCACACTTGTGGTGAGCCAGTCGGAGTTGATGCCAATGGAGAAGTTTTCGTTGCTTGCCATGAGTGCCATTTTCCCATTTGCAAAGTCTGCGTTCAGTATGATATTAAGGAAGGCCGAAATGTTTGCTTGCGGTGTGGCTCTCCATTTGACGAGAACTTACTGATGGATGCTGATACGAAGACATCAGGAGGTCGAAACACAATGGCATCTCATCTCAGCCATTCTCAGGACGTTGGAGTTCATGCTAGACATGTTAGTAGCGTGTCGACAGTGGATAGTGAATTAAATGATGAATCTGGGAACCCAATTTGGAAGAACAGAGTAGAGAGTTGGAAGGATAAGAAGAACAAAAAGAAAAGGCCTACAGTGAAGACAGAACAAGAAGCTGAAATTCCACCCCAACAACAAATGGAAGAGAAACAAGGAGGCTGCGGTTACACACTCATTTCTTCAGTTTATCCAATTCCGTCCAGCAGATTAACACCATACAGAATAGTGATCATCATGCGATTGATCATTCTAGCACTTTTCTTTCAATATCGGATAACAAATCCTGTTGATAGTGCTTTTGGTCTATGGCTCACTTCTATCATATGCGAAATCTGGTTTGCCTTCTCCTGGGTGTTGGATCAGTTCCCTAAATGGTTTCCCGTCTGCAGGGACACATTCATTGACAGATTATCGGCCAGGTTTGAAAGAGAGGGAGAACCTTCCCAGCTCGCTGCAGTGGATTTTTTTGTGAGTACTGTTGATCCATTGAAAGAACCTCCACTAATCACTGCCAATACCGTGCTTTCAATCCTGGCTGTGGACTATCCTGTCGATAAAGTCTCCTGCTATGTGTCTGACGATGGTGCAGCTATGCTCACATTTGAGTCTCTAGTTGAAACAGCCGATTTTGCAAGGAAGTGGGTTCCATTCTGCAAGAAATTCTCCATTGAACCCCGAGCTCCTGAGTTTTACTTCTCACAGAAAATAGACTATTTGAAAGATAAAGTGCAACCTTCTTTTGTCAAAGAACGTAGAGCAATGAAAAGAGCTTATGAAGAGTTTAAAGTACGAGTCAATGCGTTGGTAGCAAAGGCTCAAAAACACCGGATGAAGGCTGGTCCATGCAAGATGGAACAGCTTGGCCAGGAAATAATCCACGTTTTTCTTGGAAATACTGGCGCCCATGACATAGATGGTAATGAACTTCCTCGACTAGTCTATGTCTCCAGAGAGAAGAGGCCTGGTTACCAACATCACAAAAAAGCTGGTGCTGAAAATGCTCTGGTAAGAGTATCAGCAGTCCTCACAAATGCCCCCTTCATTCTCAACCTTGACTGTGATCACTATGTTAACAATAGCCAAGCTATACGTGAGGCAATGTGTTTCTTGATGGACCCACAAGTAGGCCGAGATCTATGCTACGTACAATTTCCTCAGAGGTTTGATGGCATTGATCGAAGTGATCGATATGCCAATCGCAACACAGTTTTCTTTGATGTGAATATGAAGGGGTTGGATGGCATTCAGGGACCAGTTTATGTTGGTACAGGTTGTGTTTTCAATAGACAGGCGCTTTATGGCTACGGACCTCCTTCTATGCCTAGCTTATCTAAGTCATCCTCATCATCCTGCTCTTGGTGTGGCTGCTGTTCGTGCTGCTGTCCTTCCAAGAAGATCTCAAAAGACCCAACAGAGATTCAGAGAGATGCAAAGAGAGAAGAGCTTGATGCTGCAATCTTTAACCTCAGGGAAATAGATAATTATGACGAGTATGAGAGGTCAATGCTGATTTCTCAATTGAGCTTTGAGAAAACTTTTGGCTTATCGTCTGTATTTATTGAGTCTACACTAATGGAAAATGGAGGAGTTGCAGAATCTGCAAACCCATCGACTTTGATCAAAGAAGCAATTCATGTCATTAGTTGTGGTTATGAAGAGAAGACTGCCTGGGGAAAAGAGATTGGTTGGATATATGGTTCAGTCACTGAGGATATCTTAACGGGTTTCAAGATGCATTGCCGAGGATGGAGGTCCATCTACTGCATGCCCTTGAGGCCAGCATTCAAAGGATCAGCACCAATTAACCTTTCTGATCGTCTGCACCAAGTTCTTCGATGGGCACTTGGATCTGTTGAGATTTTTTTTAGTAGACATTGTCCATTGTGGTATGGGTTTGCAGGCGGCCGCCTCAAATGGCTCCAAAGAATGGCATACATAAACACCATTGTCTATCCGTTCACCTCCCTCCCTCTTGTTGCTTACTGCTCATTGCCTGCAATCTGCCTGCTGACAGGAAAATTTATCATACCAACGCTCTCAAATCTAGCAAGTACCCTTTTTCTTGGTCTCTTCTTGTCCATCATTCTCACAAGTATCCTTGAGCTGCGTTGGAGTGGAGTTAGCATCGAAGACATATGGCGTAACGAGCAATTCTGGGTCATAGGAGGCGTCTCGGCCCATCTCTTTGCTGTCTTCCAAGGGTTCCTAAAGATGTTAGCTGGTGTTGACACCAACTTCACAGTTACTGCAAAGGCAGCTGATGACACAGAGTTTGGAGAGCTTTACATGGTGAAATGGACAACACTTTTGATCCCTCCTACAACCCTTATCGTCGTCAACATGGTCGGTGTCGTTGCTGGATTTTCTGATGCATTAAATGGTGGATATGAAGCCTGGGGACCTCTTTTTGGCAAGGTGTTCTTTGCCTTTTGGGTGATCTTTCATCTCTATCCATTCCTCAAAGGTCTCATGGGTCGCCAAAACCGTACTCCAACCATTGTTGTTCTTTGGTCAGTGCTGTTGGCATCAGTTTTCTCACTTGTCTGGGTGAAGATAAACCCATTTGTGAACCAAGTTGACAGTACAACCATTGCACAAAGCTGCATTGCCATAGATTGTTGA 2919 44.12 MMVSDVPICHTCGEPVGVDANGEVFVACHECHFPICKVCVQYDIKEGRNVCLRCGSPFDENLLMDADTKTSGGRNTMASHLSHSQDVGVHARHVSSVSTVDSELNDESGNPIWKNRVESWKDKKNKKKRPTVKTEQEAEIPPQQQMEEKQGGCGYTLISSVYPIPSSRLTPYRIVIIMRLIILALFFQYRITNPVDSAFGLWLTSIICEIWFAFSWVLDQFPKWFPVCRDTFIDRLSARFEREGEPSQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLTFESLVETADFARKWVPFCKKFSIEPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKRAYEEFKVRVNALVAKAQKHRMKAGPCKMEQLGQEIIHVFLGNTGAHDIDGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPFILNLDCDHYVNNSQAIREAMCFLMDPQVGRDLCYVQFPQRFDGIDRSDRYANRNTVFFDVNMKGLDGIQGPVYVGTGCVFNRQALYGYGPPSMPSLSKSSSSSCSWCGCCSCCCPSKKISKDPTEIQRDAKREELDAAIFNLREIDNYDEYERSMLISQLSFEKTFGLSSVFIESTLMENGGVAESANPSTLIKEAIHVISCGYEEKTAWGKEIGWIYGSVTEDILTGFKMHCRGWRSIYCMPLRPAFKGSAPINLSDRLHQVLRWALGSVEIFFSRHCPLWYGFAGGRLKWLQRMAYINTIVYPFTSLPLVAYCSLPAICLLTGKFIIPTLSNLASTLFLGLFLSIILTSILELRWSGVSIEDIWRNEQFWVIGGVSAHLFAVFQGFLKMLAGVDTNFTVTAKAADDTEFGELYMVKWTTLLIPPTTLIVVNMVGVVAGFSDALNGGYEAWGPLFGKVFFAFWVIFHLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSLVWVKINPFVNQVDSTTIAQSCIAIDC 972
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7788129 7793948 - Lag0025016.1 Lac10g0971 583502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0971 972 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 540 570 IPR017896 -
Lac10g0971 972 Pfam Cellulose synthase 252 963 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Lac10g0971 972 MobiDBLite consensus disorder prediction 123 146 - -
Lac10g0971 972 FunFam Cellulose synthase A catalytic subunit 4 397 536 - -
Lac10g0971 972 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 172 939 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Lac10g0971 972 SUPERFAMILY Nucleotide-diphospho-sugar transferases 266 765 IPR029044 -
Lac10g0971 972 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 79 IPR013083 -
Lac10g0971 972 SUPERFAMILY RING/U-box 3 60 - -
Lac10g0971 972 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 399 538 IPR029044 -
Lac10g0971 972 Pfam Zinc-binding RING-finger 7 59 IPR027934 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0971 Lac-Chr10:7788129 Lac4g2074 Lac-Chr4:40429848 0.00E+00 dispersed
Lac10g0971 Lac-Chr10:7788129 Lac1g1247 Lac-Chr1:31898198 0.00E+00 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0971 K10999 - csv:101208988 1818.51