Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac10g0971 | ATGATGGTTTCTGACGTCCCGATTTGCCACACTTGTGGTGAGCCAGTCGGAGTTGATGCCAATGGAGAAGTTTTCGTTGCTTGCCATGAGTGCCATTTTCCCATTTGCAAAGTCTGCGTTCAGTATGATATTAAGGAAGGCCGAAATGTTTGCTTGCGGTGTGGCTCTCCATTTGACGAGAACTTACTGATGGATGCTGATACGAAGACATCAGGAGGTCGAAACACAATGGCATCTCATCTCAGCCATTCTCAGGACGTTGGAGTTCATGCTAGACATGTTAGTAGCGTGTCGACAGTGGATAGTGAATTAAATGATGAATCTGGGAACCCAATTTGGAAGAACAGAGTAGAGAGTTGGAAGGATAAGAAGAACAAAAAGAAAAGGCCTACAGTGAAGACAGAACAAGAAGCTGAAATTCCACCCCAACAACAAATGGAAGAGAAACAAGGAGGCTGCGGTTACACACTCATTTCTTCAGTTTATCCAATTCCGTCCAGCAGATTAACACCATACAGAATAGTGATCATCATGCGATTGATCATTCTAGCACTTTTCTTTCAATATCGGATAACAAATCCTGTTGATAGTGCTTTTGGTCTATGGCTCACTTCTATCATATGCGAAATCTGGTTTGCCTTCTCCTGGGTGTTGGATCAGTTCCCTAAATGGTTTCCCGTCTGCAGGGACACATTCATTGACAGATTATCGGCCAGGTTTGAAAGAGAGGGAGAACCTTCCCAGCTCGCTGCAGTGGATTTTTTTGTGAGTACTGTTGATCCATTGAAAGAACCTCCACTAATCACTGCCAATACCGTGCTTTCAATCCTGGCTGTGGACTATCCTGTCGATAAAGTCTCCTGCTATGTGTCTGACGATGGTGCAGCTATGCTCACATTTGAGTCTCTAGTTGAAACAGCCGATTTTGCAAGGAAGTGGGTTCCATTCTGCAAGAAATTCTCCATTGAACCCCGAGCTCCTGAGTTTTACTTCTCACAGAAAATAGACTATTTGAAAGATAAAGTGCAACCTTCTTTTGTCAAAGAACGTAGAGCAATGAAAAGAGCTTATGAAGAGTTTAAAGTACGAGTCAATGCGTTGGTAGCAAAGGCTCAAAAACACCGGATGAAGGCTGGTCCATGCAAGATGGAACAGCTTGGCCAGGAAATAATCCACGTTTTTCTTGGAAATACTGGCGCCCATGACATAGATGGTAATGAACTTCCTCGACTAGTCTATGTCTCCAGAGAGAAGAGGCCTGGTTACCAACATCACAAAAAAGCTGGTGCTGAAAATGCTCTGGTAAGAGTATCAGCAGTCCTCACAAATGCCCCCTTCATTCTCAACCTTGACTGTGATCACTATGTTAACAATAGCCAAGCTATACGTGAGGCAATGTGTTTCTTGATGGACCCACAAGTAGGCCGAGATCTATGCTACGTACAATTTCCTCAGAGGTTTGATGGCATTGATCGAAGTGATCGATATGCCAATCGCAACACAGTTTTCTTTGATGTGAATATGAAGGGGTTGGATGGCATTCAGGGACCAGTTTATGTTGGTACAGGTTGTGTTTTCAATAGACAGGCGCTTTATGGCTACGGACCTCCTTCTATGCCTAGCTTATCTAAGTCATCCTCATCATCCTGCTCTTGGTGTGGCTGCTGTTCGTGCTGCTGTCCTTCCAAGAAGATCTCAAAAGACCCAACAGAGATTCAGAGAGATGCAAAGAGAGAAGAGCTTGATGCTGCAATCTTTAACCTCAGGGAAATAGATAATTATGACGAGTATGAGAGGTCAATGCTGATTTCTCAATTGAGCTTTGAGAAAACTTTTGGCTTATCGTCTGTATTTATTGAGTCTACACTAATGGAAAATGGAGGAGTTGCAGAATCTGCAAACCCATCGACTTTGATCAAAGAAGCAATTCATGTCATTAGTTGTGGTTATGAAGAGAAGACTGCCTGGGGAAAAGAGATTGGTTGGATATATGGTTCAGTCACTGAGGATATCTTAACGGGTTTCAAGATGCATTGCCGAGGATGGAGGTCCATCTACTGCATGCCCTTGAGGCCAGCATTCAAAGGATCAGCACCAATTAACCTTTCTGATCGTCTGCACCAAGTTCTTCGATGGGCACTTGGATCTGTTGAGATTTTTTTTAGTAGACATTGTCCATTGTGGTATGGGTTTGCAGGCGGCCGCCTCAAATGGCTCCAAAGAATGGCATACATAAACACCATTGTCTATCCGTTCACCTCCCTCCCTCTTGTTGCTTACTGCTCATTGCCTGCAATCTGCCTGCTGACAGGAAAATTTATCATACCAACGCTCTCAAATCTAGCAAGTACCCTTTTTCTTGGTCTCTTCTTGTCCATCATTCTCACAAGTATCCTTGAGCTGCGTTGGAGTGGAGTTAGCATCGAAGACATATGGCGTAACGAGCAATTCTGGGTCATAGGAGGCGTCTCGGCCCATCTCTTTGCTGTCTTCCAAGGGTTCCTAAAGATGTTAGCTGGTGTTGACACCAACTTCACAGTTACTGCAAAGGCAGCTGATGACACAGAGTTTGGAGAGCTTTACATGGTGAAATGGACAACACTTTTGATCCCTCCTACAACCCTTATCGTCGTCAACATGGTCGGTGTCGTTGCTGGATTTTCTGATGCATTAAATGGTGGATATGAAGCCTGGGGACCTCTTTTTGGCAAGGTGTTCTTTGCCTTTTGGGTGATCTTTCATCTCTATCCATTCCTCAAAGGTCTCATGGGTCGCCAAAACCGTACTCCAACCATTGTTGTTCTTTGGTCAGTGCTGTTGGCATCAGTTTTCTCACTTGTCTGGGTGAAGATAAACCCATTTGTGAACCAAGTTGACAGTACAACCATTGCACAAAGCTGCATTGCCATAGATTGTTGA | 2919 | 44.12 | MMVSDVPICHTCGEPVGVDANGEVFVACHECHFPICKVCVQYDIKEGRNVCLRCGSPFDENLLMDADTKTSGGRNTMASHLSHSQDVGVHARHVSSVSTVDSELNDESGNPIWKNRVESWKDKKNKKKRPTVKTEQEAEIPPQQQMEEKQGGCGYTLISSVYPIPSSRLTPYRIVIIMRLIILALFFQYRITNPVDSAFGLWLTSIICEIWFAFSWVLDQFPKWFPVCRDTFIDRLSARFEREGEPSQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLTFESLVETADFARKWVPFCKKFSIEPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKRAYEEFKVRVNALVAKAQKHRMKAGPCKMEQLGQEIIHVFLGNTGAHDIDGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPFILNLDCDHYVNNSQAIREAMCFLMDPQVGRDLCYVQFPQRFDGIDRSDRYANRNTVFFDVNMKGLDGIQGPVYVGTGCVFNRQALYGYGPPSMPSLSKSSSSSCSWCGCCSCCCPSKKISKDPTEIQRDAKREELDAAIFNLREIDNYDEYERSMLISQLSFEKTFGLSSVFIESTLMENGGVAESANPSTLIKEAIHVISCGYEEKTAWGKEIGWIYGSVTEDILTGFKMHCRGWRSIYCMPLRPAFKGSAPINLSDRLHQVLRWALGSVEIFFSRHCPLWYGFAGGRLKWLQRMAYINTIVYPFTSLPLVAYCSLPAICLLTGKFIIPTLSNLASTLFLGLFLSIILTSILELRWSGVSIEDIWRNEQFWVIGGVSAHLFAVFQGFLKMLAGVDTNFTVTAKAADDTEFGELYMVKWTTLLIPPTTLIVVNMVGVVAGFSDALNGGYEAWGPLFGKVFFAFWVIFHLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSLVWVKINPFVNQVDSTTIAQSCIAIDC | 972 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 7788129 | 7793948 | - | Lag0025016.1 | Lac10g0971 | 583502 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac10g0971 | 972 | ProSiteProfiles | 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. | 540 | 570 | IPR017896 | - | |
Lac10g0971 | 972 | Pfam | Cellulose synthase | 252 | 963 | IPR005150 | GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro) | |
Lac10g0971 | 972 | MobiDBLite | consensus disorder prediction | 123 | 146 | - | - | |
Lac10g0971 | 972 | FunFam | Cellulose synthase A catalytic subunit 4 | 397 | 536 | - | - | |
Lac10g0971 | 972 | PANTHER | X-BOX TRANSCRIPTION FACTOR-RELATED | 172 | 939 | - | GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER) | |
Lac10g0971 | 972 | SUPERFAMILY | Nucleotide-diphospho-sugar transferases | 266 | 765 | IPR029044 | - | |
Lac10g0971 | 972 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 79 | IPR013083 | - | |
Lac10g0971 | 972 | SUPERFAMILY | RING/U-box | 3 | 60 | - | - | |
Lac10g0971 | 972 | Gene3D | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 399 | 538 | IPR029044 | - | |
Lac10g0971 | 972 | Pfam | Zinc-binding RING-finger | 7 | 59 | IPR027934 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac10g0971 | Lac-Chr10:7788129 | Lac4g2074 | Lac-Chr4:40429848 | 0.00E+00 | dispersed | |
Lac10g0971 | Lac-Chr10:7788129 | Lac1g1247 | Lac-Chr1:31898198 | 0.00E+00 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac10g0971 | K10999 | - | csv:101208988 | 1818.51 |