Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0984 ATGGCTGCCGCTGCGATTTTCTCGTCTCTACGAAGAAGGAGATCGCCGTCGTTGGAGGCTTTTTTGGCCCCCGTTGACCTCTCCGATGTGGCCTTAGTTCAGACCCTTGCGGTAGTTGCGACGGAGCTCGTTTCTCGATTTTCAGAGAAGTCCTTCTTCTTTCAGCGAAGGAATTCGCGATCTCTGATAAGGAAGCTTGAGGTTTGTCTCGTGTTTTTGGACTTTCTGAAGGATATGGATGCGACTTTGCCTCACACGGCGTTGCTCTGTTTGAAAGAGCTTTATCTGTTGTTGTATCGGTCTAAGATACTTCTCGATTATTGCTCTGAATCGAGTAAGTTGTGGCTGTTGCTTCAGAACCACTCGATTTCCGGGCATTTCAACGATTTGAATTTGGAGTTGTTGACATTTTTGGATGTTTTTCCTCTTGAGGAAGTTGAATTGGGGATGGATGTTAGAGAGCAGGTTGAGCTCTTGCAGAAGCAGTTGAGAAGGACGAGGATGTTTGTTGATGAACGTGATGAGGCGTTGAGGGCTTGCTTCCTTTCGTTTCTTGACGAGTTTGAGAACGGGAGGCTGCCCAATCCGAGGGAAATGAGGGAGTTTTTTGTTGATAAGTTGGGGATTCGGAATGCAAAGAGTTGTAGAACTGAAATTGAGTTTTTAGAGGAGCAGATTGTCAATCATGAGGGCGACGTTGAGCCCACCGTCGCGGTGTTAAACGGTTTCGTTGCTTTCACTAGATACAGTAGGTTTTTCCTCTTTGGATTTGAGGAAGATGAAGTTGAATCAAGAGCAGCAAACCAGAAGAAGCTGAAGAAGAATTTGATTACTCAGGAGATAGCCGATACGTTTTTAACGATCCCAAGGGACTTCTGCTGCCCAATATCACTGGATTTGATGAAGGACCCAGTGATCATTTCTACAGGTCAGACATATGATCGCAGTTCAATTACCAGATGGATGGAAGAAGGGCACAACACTTGCCCGAAGACGGGGCAAATGCTCATCCATACTCGTCTCGCTCCCAACCGGGCATTGAGGAATTTGATCATGCAATGGTGCATTGCCCATGGAGTTCCTTATGATCCACCAGAAGGGATGGATGCATCTGCAGAAAGCTATGCAATGGCTTCTCCCACACGAGCTGCACTGGAAGCCAACAGAGCAACAGCTTTAATCCTTATTCAACAGTTATCAATTGGATCGCAAGATGCGCAGACGATTGCTGCACGTGAGATTCGTTTGTTGGCCAAAACAGGGAAAGAGAACCGTGCTTTCATCGCAGAAGCCGGTGCCATCCCCCATCTTCAAAAACTGTTGGCTTCCCCAAACCCAGTTGCACAGGAGAATTCTGTGACTGCTATGCTTAACCTCTCAATATATGACAAGAACAAAAGTTTGATCATGAGTGAAGTAGGGTGTTTAGGATCAATAACCGAAGTGTTGAGATTCGGACATACTACAGAAGCTCGGGAAAACGCTGCAGCTACGTTATTCAGCCTCTCTGCAGTTCATGACTTCAAGAAGAGAATAGCAGAGGAGGGTGGTGCAGTTGAAGCCTTGGCAGGGTTGTTGAGAGATGGTACCCCAAGAGGAAAGAAGGATGCTGTGACAGCTTTATTTAATCTCTCAACCCACACGGATAACTGCGTTCGGATGATAGAGGCCGGGGCAGTAACAGCACTTGTAGGAGCATTGGGGAATGAAGGTGTTGCTGAAGAAGCAGCAGGTGCATTGGCCTTGATTGTCAGACAGCCCGTTGGGGCCGAAGCAGTCGGTAAAGAGGAGAGAGCTGTGGCTGGATTGATAACAATGATGCGATGTGGGACACCAAGAGGAAAAGAGAATGCAGTAGCTGCTTTGCTCGAGTTGTGTCGGAGTGGCGGAGCTGCTACGACTGAGCAAGTGTTCAAGGCTCCTGCTTTGGCCGGGTTGCTCCAATCGCTCCTATTTACCGGTACGAAGCGAGCAAGAAGAAAGGCTGCTTCGCTAGCTAGAGTTTTCCAAAGATGTGAGCATGTCACAATGCATTATGGCGGATTGGGCGTTGGTTACGCCTACGCAAGTAACTCGGCTTCTAACAGGGATTCAAGCTTTACTAGCGAGGTGTCTGTGCCGATATCCATCTCGGTACCCGTCGTATAG 2148 47.77 MAAAAIFSSLRRRRSPSLEAFLAPVDLSDVALVQTLAVVATELVSRFSEKSFFFQRRNSRSLIRKLEVCLVFLDFLKDMDATLPHTALLCLKELYLLLYRSKILLDYCSESSKLWLLLQNHSISGHFNDLNLELLTFLDVFPLEEVELGMDVREQVELLQKQLRRTRMFVDERDEALRACFLSFLDEFENGRLPNPREMREFFVDKLGIRNAKSCRTEIEFLEEQIVNHEGDVEPTVAVLNGFVAFTRYSRFFLFGFEEDEVESRAANQKKLKKNLITQEIADTFLTIPRDFCCPISLDLMKDPVIISTGQTYDRSSITRWMEEGHNTCPKTGQMLIHTRLAPNRALRNLIMQWCIAHGVPYDPPEGMDASAESYAMASPTRAALEANRATALILIQQLSIGSQDAQTIAAREIRLLAKTGKENRAFIAEAGAIPHLQKLLASPNPVAQENSVTAMLNLSIYDKNKSLIMSEVGCLGSITEVLRFGHTTEARENAAATLFSLSAVHDFKKRIAEEGGAVEALAGLLRDGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALGNEGVAEEAAGALALIVRQPVGAEAVGKEERAVAGLITMMRCGTPRGKENAVAALLELCRSGGAATTEQVFKAPALAGLLQSLLFTGTKRARRKAASLARVFQRCEHVTMHYGGLGVGYAYASNSASNRDSSFTSEVSVPISISVPVV 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7907952 7910099 + Lag0025029.1 Lac10g0984 583515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0984 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 432 474 IPR000225 GO:0005515(InterPro)
Lac10g0984 715 PANTHER U BOX DOMAIN-CONTAINING 55 672 - -
Lac10g0984 715 Pfam U-box domain 288 358 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac10g0984 715 Gene3D - 393 517 IPR011989 -
Lac10g0984 715 CDD RING-Ubox_PUB 289 341 IPR045210 -
Lac10g0984 715 Pfam Armadillo/beta-catenin-like repeat 422 460 IPR000225 GO:0005515(InterPro)
Lac10g0984 715 Gene3D - 518 674 IPR011989 -
Lac10g0984 715 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 362 IPR013083 -
Lac10g0984 715 FunFam RING-type E3 ubiquitin transferase 364 685 - -
Lac10g0984 715 SUPERFAMILY ARM repeat 394 669 IPR016024 -
Lac10g0984 715 Coils Coil 212 232 - -
Lac10g0984 715 SMART arm_5 547 585 IPR000225 GO:0005515(InterPro)
Lac10g0984 715 SMART arm_5 506 546 IPR000225 GO:0005515(InterPro)
Lac10g0984 715 SMART arm_5 421 461 IPR000225 GO:0005515(InterPro)
Lac10g0984 715 SMART Ubox_2 291 354 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac10g0984 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 517 559 IPR000225 GO:0005515(InterPro)
Lac10g0984 715 FunFam RING-type E3 ubiquitin transferase 287 362 - -
Lac10g0984 715 ProSiteProfiles U-box domain profile. 287 361 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac10g0984 715 SUPERFAMILY RING/U-box 277 362 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0984 Lac-Chr10:7907952 Lac1g1790 Lac-Chr1:39414949 1.20E-113 dispersed
Lac9g2482 Lac-Chr9:43658692 Lac10g0984 Lac-Chr10:7907952 1.40E-06 dispersed
Lac10g0984 Lac-Chr10:7907952 Lac10g0433 Lac-Chr10:3391066 6.00E-84 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0984 - - - 0.0