Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0984 ATGGCTGCCGCTGCGATTTTCTCGTCTCTACGAAGAAGGAGATCGCCGTCGTTGGAGGCTTTTTTGGCCCCCGTTGACCTCTCCGATGTGGCCTTAGTTCAGACCCTTGCGGTAGTTGCGACGGAGCTCGTTTCTCGATTTTCAGAGAAGTCCTTCTTCTTTCAGCGAAGGAATTCGCGATCTCTGATAAGGAAGCTTGAGGTTTGTCTCGTGTTTTTGGACTTTCTGAAGGATATGGATGCGACTTTGCCTCACACGGCGTTGCTCTGTTTGAAAGAGCTTTATCTGTTGTTGTATCGGTCTAAGATACTTCTCGATTATTGCTCTGAATCGAGTAAGTTGTGGCTGTTGCTTCAGAACCACTCGATTTCCGGGCATTTCAACGATTTGAATTTGGAGTTGTTGACATTTTTGGATGTTTTTCCTCTTGAGGAAGTTGAATTGGGGATGGATGTTAGAGAGCAGGTTGAGCTCTTGCAGAAGCAGTTGAGAAGGACGAGGATGTTTGTTGATGAACGTGATGAGGCGTTGAGGGCTTGCTTCCTTTCGTTTCTTGACGAGTTTGAGAACGGGAGGCTGCCCAATCCGAGGGAAATGAGGGAGTTTTTTGTTGATAAGTTGGGGATTCGGAATGCAAAGAGTTGTAGAACTGAAATTGAGTTTTTAGAGGAGCAGATTGTCAATCATGAGGGCGACGTTGAGCCCACCGTCGCGGTGTTAAACGGTTTCGTTGCTTTCACTAGATACAGTAGGTTTTTCCTCTTTGGATTTGAGGAAGATGAAGTTGAATCAAGAGCAGCAAACCAGAAGAAGCTGAAGAAGAATTTGATTACTCAGGAGATAGCCGATACGTTTTTAACGATCCCAAGGGACTTCTGCTGCCCAATATCACTGGATTTGATGAAGGACCCAGTGATCATTTCTACAGGTCAGACATATGATCGCAGTTCAATTACCAGATGGATGGAAGAAGGGCACAACACTTGCCCGAAGACGGGGCAAATGCTCATCCATACTCGTCTCGCTCCCAACCGGGCATTGAGGAATTTGATCATGCAATGGTGCATTGCCCATGGAGTTCCTTATGATCCACCAGAAGGGATGGATGCATCTGCAGAAAGCTATGCAATGGCTTCTCCCACACGAGCTGCACTGGAAGCCAACAGAGCAACAGCTTTAATCCTTATTCAACAGTTATCAATTGGATCGCAAGATGCGCAGACGATTGCTGCACGTGAGATTCGTTTGTTGGCCAAAACAGGGAAAGAGAACCGTGCTTTCATCGCAGAAGCCGGTGCCATCCCCCATCTTCAAAAACTGTTGGCTTCCCCAAACCCAGTTGCACAGGAGAATTCTGTGACTGCTATGCTTAACCTCTCAATATATGACAAGAACAAAAGTTTGATCATGAGTGAAGTAGGGTGTTTAGGATCAATAACCGAAGTGTTGAGATTCGGACATACTACAGAAGCTCGGGAAAACGCTGCAGCTACGTTATTCAGCCTCTCTGCAGTTCATGACTTCAAGAAGAGAATAGCAGAGGAGGGTGGTGCAGTTGAAGCCTTGGCAGGGTTGTTGAGAGATGGTACCCCAAGAGGAAAGAAGGATGCTGTGACAGCTTTATTTAATCTCTCAACCCACACGGATAACTGCGTTCGGATGATAGAGGCCGGGGCAGTAACAGCACTTGTAGGAGCATTGGGGAATGAAGGTGTTGCTGAAGAAGCAGCAGGTGCATTGGCCTTGATTGTCAGACAGCCCGTTGGGGCCGAAGCAGTCGGTAAAGAGGAGAGAGCTGTGGCTGGATTGATAACAATGATGCGATGTGGGACACCAAGAGGAAAAGAGAATGCAGTAGCTGCTTTGCTCGAGTTGTGTCGGAGTGGCGGAGCTGCTACGACTGAGCAAGTGTTCAAGGCTCCTGCTTTGGCCGGGTTGCTCCAATCGCTCCTATTTACCGGTACGAAGCGAGCAAGAAGAAAGGCTGCTTCGCTAGCTAGAGTTTTCCAAAGATGTGAGCATGTCACAATGCATTATGGCGGATTGGGCGTTGGTTACGCCTACGCAAGTAACTCGGCTTCTAACAGGGATTCAAGCTTTACTAGCGAGGTGTCTGTGCCGATATCCATCTCGGTACCCGTCGTATAG 2148 47.77 MAAAAIFSSLRRRRSPSLEAFLAPVDLSDVALVQTLAVVATELVSRFSEKSFFFQRRNSRSLIRKLEVCLVFLDFLKDMDATLPHTALLCLKELYLLLYRSKILLDYCSESSKLWLLLQNHSISGHFNDLNLELLTFLDVFPLEEVELGMDVREQVELLQKQLRRTRMFVDERDEALRACFLSFLDEFENGRLPNPREMREFFVDKLGIRNAKSCRTEIEFLEEQIVNHEGDVEPTVAVLNGFVAFTRYSRFFLFGFEEDEVESRAANQKKLKKNLITQEIADTFLTIPRDFCCPISLDLMKDPVIISTGQTYDRSSITRWMEEGHNTCPKTGQMLIHTRLAPNRALRNLIMQWCIAHGVPYDPPEGMDASAESYAMASPTRAALEANRATALILIQQLSIGSQDAQTIAAREIRLLAKTGKENRAFIAEAGAIPHLQKLLASPNPVAQENSVTAMLNLSIYDKNKSLIMSEVGCLGSITEVLRFGHTTEARENAAATLFSLSAVHDFKKRIAEEGGAVEALAGLLRDGTPRGKKDAVTALFNLSTHTDNCVRMIEAGAVTALVGALGNEGVAEEAAGALALIVRQPVGAEAVGKEERAVAGLITMMRCGTPRGKENAVAALLELCRSGGAATTEQVFKAPALAGLLQSLLFTGTKRARRKAASLARVFQRCEHVTMHYGGLGVGYAYASNSASNRDSSFTSEVSVPISISVPVV 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7907952 7910099 + Lag0025029.1 Lac10g0984 583515

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0984 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 432 474 IPR000225 GO:0005515(InterPro)
Lac10g0984 715 PANTHER U BOX DOMAIN-CONTAINING 55 672 - -
Lac10g0984 715 Pfam U-box domain 288 358 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac10g0984 715 Gene3D - 393 517 IPR011989 -
Lac10g0984 715 CDD RING-Ubox_PUB 289 341 IPR045210 -
Lac10g0984 715 Pfam Armadillo/beta-catenin-like repeat 422 460 IPR000225 GO:0005515(InterPro)
Lac10g0984 715 Gene3D - 518 674 IPR011989 -
Lac10g0984 715 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 362 IPR013083 -
Lac10g0984 715 FunFam RING-type E3 ubiquitin transferase 364 685 - -
Lac10g0984 715 SUPERFAMILY ARM repeat 394 669 IPR016024 -
Lac10g0984 715 Coils Coil 212 232 - -
Lac10g0984 715 SMART arm_5 547 585 IPR000225 GO:0005515(InterPro)
Lac10g0984 715 SMART arm_5 506 546 IPR000225 GO:0005515(InterPro)
Lac10g0984 715 SMART arm_5 421 461 IPR000225 GO:0005515(InterPro)
Lac10g0984 715 SMART Ubox_2 291 354 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac10g0984 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 517 559 IPR000225 GO:0005515(InterPro)
Lac10g0984 715 FunFam RING-type E3 ubiquitin transferase 287 362 - -
Lac10g0984 715 ProSiteProfiles U-box domain profile. 287 361 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac10g0984 715 SUPERFAMILY RING/U-box 277 362 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0984 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0984 Lac-Chr10:7907952 Lac1g1790 Lac-Chr1:39414949 1.20E-113 dispersed
Lac9g2482 Lac-Chr9:43658692 Lac10g0984 Lac-Chr10:7907952 1.40E-06 dispersed
Lac10g0984 Lac-Chr10:7907952 Lac10g0433 Lac-Chr10:3391066 6.00E-84 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g256 . Blo11g00265 . . . . Bma14g00979 . Cmo13g00612 Cmo18g00411 . . . . . Cpe09g00791 . . . . . . . . . . . . . . . . Cone5ag1640 . . . . Chy12g00056 . . . . Bda07g00963 . . . . Sed08g2733 . . Cma13g00582 Cma18g00432 Car13g00466 Car18g00408 . Cpe20g00479 Bhi08g02151 Tan05g2530 Cmetu12g0678 Lac10g0984 Hepe07g1836 . . Cla03g00696 Cam03g0697 Cec03g0670 Cco03g0707 Clacu03g0744 Cmu03g1336 Cre03g0979 Lsi02g00832 Csa01g02298 . Cme12g01264
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac8g0902 . 1 1040 U-box Gene Family AT5G15400 77.0 0.0e+00 1593.9
Lac9g1195 . 196 837 U-box Gene Family AT2G23140 65.9 2.5e-121 433.7
Lac6g0745 . 1 773 U-box Gene Family AT1G24330 59.6 9.6e-245 844.0
Lac13g0067 . 1 586 U-box Gene Family AT1G24330 66.6 6.7e-214 741.5
Lac6g0745 . 1 772 U-box Gene Family AT1G67530 60.0 5.4e-243 838.2
Lac13g0067 . 1 586 U-box Gene Family AT1G67530 66.3 6.6e-209 724.9
Lac1g3266 . 1 362 U-box Gene Family AT4G21350 63.4 8.5e-122 434.5
Lac13g1443 . 260 455 U-box Gene Family AT1G71020 68.7 7.2e-73 272.3
Lac8g1555 . 271 469 U-box Gene Family AT1G71020 53.7 4.8e-53 206.5
Lac13g0683 . 214 417 U-box Gene Family AT1G71020 53.1 9.5e-49 192.2
Lac7g2706 . 258 427 U-box Gene Family AT1G71020 57.8 1.4e-47 188.3
Lac9g2481 . 256 405 U-box Gene Family AT1G71020 56.1 8.6e-42 169.1
Lac13g1443 . 16 659 U-box Gene Family AT1G23030 57.0 7.2e-110 395.6
Lac7g2706 . 93 632 U-box Gene Family AT2G28830 59.9 8.9e-102 368.6
Lac9g2481 . 93 409 U-box Gene Family AT2G28830 52.6 4.3e-80 296.6
Lac7g2706 . 1 634 U-box Gene Family AT3G46510 70.3 2.5e-169 593.2
Lac9g2481 . 3 407 U-box Gene Family AT3G46510 58.8 4.2e-124 443.0
Lac13g0683 . 9 624 U-box Gene Family AT3G46510 58.9 8.8e-122 435.3
Lac13g0683 . 1 626 U-box Gene Family AT3G54850 68.9 5.1e-167 585.5
Lac7g2706 . 8 627 U-box Gene Family AT3G54850 55.6 8.8e-103 372.1
Lac9g1894 . 97 649 U-box Gene Family AT5G42340 65.1 3.8e-125 446.4
Lac1g1790 . 9 672 U-box Gene Family AT5G01830 56.5 4.0e-194 675.6
Lac10g0984 . 1 714 U-box Gene Family AT1G29340 64.4 1.0e-251 867.1
Lac11g0229 . 27 442 U-box Gene Family AT5G37490 50.8 1.1e-109 394.4
Lac1g1729 . 10 421 U-box Gene Family AT3G52450 53.5 3.5e-119 426.0
Lac10g2755 . 2 407 U-box Gene Family AT3G52450 50.1 2.5e-117 419.9
Lac3g1540 . 3 135 U-box Gene Family AT3G52450 60.9 2.3e-41 167.5
Lac10g2755 . 2 406 U-box Gene Family AT2G35930 52.7 1.3e-118 424.1
Lac9g2738 . 5 406 U-box Gene Family AT2G35930 52.1 6.3e-118 421.8
Lac1g1729 . 9 421 U-box Gene Family AT2G35930 50.8 5.5e-114 408.7
Lac3g1540 . 3 135 U-box Gene Family AT2G35930 57.9 8.1e-41 165.6
Lac5g2555 . 7 428 U-box Gene Family AT3G19380 63.9 8.6e-147 517.7
Lac5g2555 . 1 428 U-box Gene Family AT1G49780 63.4 1.4e-149 526.9
Lac1g2397 . 1 411 U-box Gene Family AT5G64660 53.8 9.0e-120 427.9
Lac1g2397 . 1 411 U-box Gene Family AT5G09800 51.1 6.7e-104 375.2
Lac2g0412 . 1 453 U-box Gene Family AT3G49810 65.1 1.6e-159 560.1
Lac6g0235 . 1 452 U-box Gene Family AT3G49810 63.3 3.5e-154 542.3
Lac2g0412 . 1 453 U-box Gene Family AT5G65920 63.8 7.7e-154 541.2
Lac6g0235 . 1 452 U-box Gene Family AT5G65920 63.8 1.1e-152 537.3
Lac7g0234 . 1 875 U-box Gene Family AT2G45910 52.1 1.4e-233 807.0
Lac6g3081 . 4 726 U-box Gene Family AT2G19410 51.1 2.8e-215 746.1
Lac11g1756 . 25 808 U-box Gene Family AT4G25160 54.9 4.9e-226 781.9
Lac8g2617 . 39 549 U-box Gene Family AT5G40140 56.0 2.6e-95 347.1
Lac3g0670 . 28 541 U-box Gene Family AT5G40140 50.7 1.5e-69 261.5
Lac10g0421 . 29 494 U-box Gene Family AT5G40140 50.9 1.0e-54 212.2
Lac6g0084 . 45 853 U-box Gene Family AT1G76390 62.2 8.5e-276 947.2
Lac6g0084 . 54 853 U-box Gene Family AT1G20780 62.5 5.1e-281 964.5
Lac6g0745 . 1 775 U-box Gene Family AT1G27910 63.2 3.3e-269 925.2
Lac13g0067 . 1 767 U-box Gene Family AT1G27910 54.4 6.7e-214 741.5
Lac1g2663 . 1 593 U-box Gene Family AT5G67530 75.9 1.6e-263 906.0
Lac7g0310 . 3 157 U-box Gene Family AT5G67530 53.5 2.7e-45 181.0
Lac10g2836 . 12 156 U-box Gene Family AT5G67530 50.3 2.5e-38 157.9
Lac1g2774 . 65 860 U-box Gene Family AT5G65500 50.9 2.6e-213 739.6
Lac7g0542 . 1 516 U-box Gene Family AT1G04510 75.0 1.1e-223 773.5
Lac7g0542 . 1 485 U-box Gene Family AT2G33340 73.9 1.1e-209 726.9
Lac11g2492 . 5 278 U-box Gene Family AT3G07370 65.7 7.3e-102 367.9
Lac8g0902 . 1 1040 U-box Gene Family AT5G15400 77.0 0.0e+00 1593.9
Lac9g1195 . 196 837 U-box Gene Family AT2G23140 65.9 2.5e-121 433.7
Lac6g0745 . 1 773 U-box Gene Family AT1G24330 59.6 9.6e-245 844.0
Lac13g0067 . 1 586 U-box Gene Family AT1G24330 66.6 6.7e-214 741.5
Lac6g0745 . 1 772 U-box Gene Family AT1G67530 60.0 5.4e-243 838.2
Lac13g0067 . 1 586 U-box Gene Family AT1G67530 66.3 6.6e-209 724.9
Lac1g3266 . 1 362 U-box Gene Family AT4G21350 63.4 8.5e-122 434.5
Lac13g1443 . 260 455 U-box Gene Family AT1G71020 68.7 7.2e-73 272.3
Lac8g1555 . 271 469 U-box Gene Family AT1G71020 53.7 4.8e-53 206.5
Lac13g0683 . 214 417 U-box Gene Family AT1G71020 53.1 9.5e-49 192.2
Lac7g2706 . 258 427 U-box Gene Family AT1G71020 57.8 1.4e-47 188.3
Lac9g2481 . 256 405 U-box Gene Family AT1G71020 56.1 8.6e-42 169.1
Lac13g1443 . 16 659 U-box Gene Family AT1G23030 57.0 7.2e-110 395.6
Lac7g2706 . 93 632 U-box Gene Family AT2G28830 59.9 8.9e-102 368.6
Lac9g2481 . 93 409 U-box Gene Family AT2G28830 52.6 4.3e-80 296.6
Lac7g2706 . 1 634 U-box Gene Family AT3G46510 70.3 2.5e-169 593.2
Lac9g2481 . 3 407 U-box Gene Family AT3G46510 58.8 4.2e-124 443.0
Lac13g0683 . 9 624 U-box Gene Family AT3G46510 58.9 8.8e-122 435.3
Lac13g0683 . 1 626 U-box Gene Family AT3G54850 68.9 5.1e-167 585.5
Lac7g2706 . 8 627 U-box Gene Family AT3G54850 55.6 8.8e-103 372.1
Lac9g1894 . 97 649 U-box Gene Family AT5G42340 65.1 3.8e-125 446.4
Lac1g1790 . 9 672 U-box Gene Family AT5G01830 56.5 4.0e-194 675.6
Lac10g0984 . 1 714 U-box Gene Family AT1G29340 64.4 1.0e-251 867.1
Lac11g0229 . 27 442 U-box Gene Family AT5G37490 50.8 1.1e-109 394.4
Lac1g1729 . 10 421 U-box Gene Family AT3G52450 53.5 3.5e-119 426.0
Lac10g2755 . 2 407 U-box Gene Family AT3G52450 50.1 2.5e-117 419.9
Lac3g1540 . 3 135 U-box Gene Family AT3G52450 60.9 2.3e-41 167.5
Lac10g2755 . 2 406 U-box Gene Family AT2G35930 52.7 1.3e-118 424.1
Lac9g2738 . 5 406 U-box Gene Family AT2G35930 52.1 6.3e-118 421.8
Lac1g1729 . 9 421 U-box Gene Family AT2G35930 50.8 5.5e-114 408.7
Lac3g1540 . 3 135 U-box Gene Family AT2G35930 57.9 8.1e-41 165.6
Lac5g2555 . 7 428 U-box Gene Family AT3G19380 63.9 8.6e-147 517.7
Lac5g2555 . 1 428 U-box Gene Family AT1G49780 63.4 1.4e-149 526.9
Lac1g2397 . 1 411 U-box Gene Family AT5G64660 53.8 9.0e-120 427.9
Lac1g2397 . 1 411 U-box Gene Family AT5G09800 51.1 6.7e-104 375.2
Lac2g0412 . 1 453 U-box Gene Family AT3G49810 65.1 1.6e-159 560.1
Lac6g0235 . 1 452 U-box Gene Family AT3G49810 63.3 3.5e-154 542.3
Lac2g0412 . 1 453 U-box Gene Family AT5G65920 63.8 7.7e-154 541.2
Lac6g0235 . 1 452 U-box Gene Family AT5G65920 63.8 1.1e-152 537.3
Lac7g0234 . 1 875 U-box Gene Family AT2G45910 52.1 1.4e-233 807.0
Lac6g3081 . 4 726 U-box Gene Family AT2G19410 51.1 2.8e-215 746.1
Lac11g1756 . 25 808 U-box Gene Family AT4G25160 54.9 4.9e-226 781.9
Lac8g2617 . 39 549 U-box Gene Family AT5G40140 56.0 2.6e-95 347.1
Lac3g0670 . 28 541 U-box Gene Family AT5G40140 50.7 1.5e-69 261.5
Lac10g0421 . 29 494 U-box Gene Family AT5G40140 50.9 1.0e-54 212.2
Lac6g0084 . 45 853 U-box Gene Family AT1G76390 62.2 8.5e-276 947.2
Lac6g0084 . 54 853 U-box Gene Family AT1G20780 62.5 5.1e-281 964.5
Lac6g0745 . 1 775 U-box Gene Family AT1G27910 63.2 3.3e-269 925.2
Lac13g0067 . 1 767 U-box Gene Family AT1G27910 54.4 6.7e-214 741.5
Lac1g2663 . 1 593 U-box Gene Family AT5G67530 75.9 1.6e-263 906.0
Lac7g0310 . 3 157 U-box Gene Family AT5G67530 53.5 2.7e-45 181.0
Lac10g2836 . 12 156 U-box Gene Family AT5G67530 50.3 2.5e-38 157.9
Lac1g2774 . 65 860 U-box Gene Family AT5G65500 50.9 2.6e-213 739.6
Lac7g0542 . 1 516 U-box Gene Family AT1G04510 75.0 1.1e-223 773.5
Lac7g0542 . 1 485 U-box Gene Family AT2G33340 73.9 1.1e-209 726.9
Lac11g2492 . 5 278 U-box Gene Family AT3G07370 65.7 7.3e-102 367.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008312 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 35