Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0987 ATGACATCGGGGACGAGAATGCCGACTTGGAAGGAGAGGGAGAACAACAAGCGCCGTGAGAGGCGCCGCCGTGCCATCGCCGCTAAGATCTTTCTCGGCTTGCGAATGTACGGCAACTACAAGCTCCCCAAGCACTGCGACAATAATGAGGTCCTCAAAGCCCTCTGCGATGAAGCTGGATGGACTGTCGAGGAAGACGGCACTACCTACCGGAAGGGATGCAAGCCTGTGGAACGCGATATCATGGGCGGATCAGCTACTGCGAGTCCATGTTCATCTTACCAGCCGAGCCCATGTGCATCTTATAACCCAAGTCCTGCGTCTTCTTCCTTCCCAAGCCCCACCTCTTCCCGTTACGCCATTAAAGGCAATGACAATGCTGCTGACCCCAATTCCCTCATCCCATGGCTGAAAAACCTCTCCTCAGGTTCATCATCAGCTTCCTCCAGGCTGCCTCACCATAATCTTTACATCACTTGTGGCTCCATAAGTGCGCCCGTCACCCCTCCATCGAGCTCCCCAACAGCTCGAACACCCAGAAAACCAAATGATTGGGACAATCATCCAGCAGCTGCTCCTGCTTGGGCTGCACAGCGCTTCGCCTGCTTGCCTGCATCAACCCCACCGAGCCCTGGGCGTCAGATGTTGGCTGATTCAGCATGGCTTGATAGTATGCGGATTCCTCAAAGTGGACCATCGTCTCCAACCTTCAGCCTTGTGGCAAGGAATCCGTTTGGATTTAAGGAGGCAATGTCCGCTGGAGGGTCTCGTAATTGGACTCCTGCACAGAGTGGGACGTGCTCGCCCACGGTCGCTGCAGGCACTGATCATACTTCAGATGTTCCGATGACGGATGGAACTGTGGCAGAGTTTGCCTTTGGTAGTTGTTCAATTGGGTTGGTGAAGCCTTGGGAAGGAGAGAGAATTCATGAGGAATGCGTCTCTGATGATCTTGAACTTACACTTGGGAATTCAAGAACGAGGTGA 987 53.7 MTSGTRMPTWKERENNKRRERRRRAIAAKIFLGLRMYGNYKLPKHCDNNEVLKALCDEAGWTVEEDGTTYRKGCKPVERDIMGGSATASPCSSYQPSPCASYNPSPASSSFPSPTSSRYAIKGNDNAADPNSLIPWLKNLSSGSSSASSRLPHHNLYITCGSISAPVTPPSSSPTARTPRKPNDWDNHPAAAPAWAAQRFACLPASTPPSPGRQMLADSAWLDSMRIPQSGPSSPTFSLVARNPFGFKEAMSAGGSRNWTPAQSGTCSPTVAAGTDHTSDVPMTDGTVAEFAFGSCSIGLVKPWEGERIHEECVSDDLELTLGNSRTR 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7931396 7934057 + Lag0025032.1 Lac10g0987 583518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0987 328 MobiDBLite consensus disorder prediction 1 21 - -
Lac10g0987 328 MobiDBLite consensus disorder prediction 256 271 - -
Lac10g0987 328 MobiDBLite consensus disorder prediction 166 188 - -
Lac10g0987 328 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 1 328 IPR033264 GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0009742(InterPro)
Lac10g0987 328 MobiDBLite consensus disorder prediction 252 271 - -
Lac10g0987 328 Pfam BES1/BZR1 plant transcription factor, N-terminal 4 141 IPR008540 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0987 Lac-Chr10:7931396 Lac5g2412 Lac-Chr5:42779044 4.80E-121 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22762 PF05687 BES1_N 1.60E-66 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0987 - - - 0.0