Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0993 ATGATGTTGGCCAAGAGCTTCTTCGTTTTCATTGTTCTTGCTGTGGATTGCTTCATGTTCTTGAGATTTGTAGACTCCAAGCTTCCCCAAGAAGAGGTTGATGCACTACAGCAAATTACAAGAACATTAGGAGCAGTTCATTGGAAATTCAATAGTAACACCTGTGACGTTGAAATGTTTGGGATCACAGAAAAACCTCCGAGGGGATCTGAGGGTAAAATTGCTTGTGATTGCAACCTCGAGAACAGCACAACATGTCATGTCGTAAAGATAGAGTTCAAAAATCACAATCTTCCCGGTGTTCTTCCACCTGAAATAGTCAAGCTTCCTTACCTGCAAGAAGTTGATTTAGCTTACAACTACCTTCATGGTAATATACCTCGGGAGTGGGCTTCAATGCGGCTGACATCAATCTCTCTTCTTGTAAATCGGTTATCGGGGGAAATACCAGCAGAATTGGGGAATATGACCACTCTAATGAACCTGACCCTTGAAGCAAACCAATTTACTGGTGCAATTCCACCACAACTTGGGAGGTTAAGCAACCTGCAAACCTTGCTGCTATCATCTAACCAATTGACTGGCACATTGCCGACAACTTTTGCTGCATTGGATAACCTAACAAATTTCCGAATAAATGATAACAACCTCAATGGAACCATACCCGACTTCATACAGAATTGGAAACTACTCGAAAGATTAGAACTGCATGCAAGTGGACTTCAGGGACCAATTCCTGCAAAAATATCCCTCTTGAGTAACTTAAAAGAGTTGAGGATTAGTGATATTAATGGGCCAAAGCAGGATTTTCCTGAGTTGATAAACATGACGGGCATGGTTAAATTGGTTCTGAGAAATTGTAACATTGCTGGAAAGATTCCTTCATATGTGTGGACGAGACCAAATATGGAAATGCTGGACCTCAGCTTTAACCAGTTGACTGGGGAAGTTCCAGAGGATATAAACATGGAGCGCATTAGATTTCTCTTCTTAAGTGGCAATATGCTGAGTGGCAACCTACCAGAGTCAATCTTGAAGGATGGAACTAATGTTGATCTTTCATACAATAACTTGACATGGCAAGGCCCTGAGCAGCATGTTTGTAGAAAGAATTTGAATATGAATCTGAACTTGTTTCGAAGTTCTTCCTTCGGCAACACTTTACAGGAAAGTCTCCCCTGCTTGAAGGATTCCATCTGTTCAAAATATTCAAAATGTTGGTTCATCAATTCTGGTGGGAATGACTTAACCTTGGAGGTAAACAACAGAAACATTCGCTACAATGGGGATGCAGATGTTGAAGGTGGGGCGGCAAGATTCTATATTGATCCTGATAGCTACTGGGGATTGAGTAGTACTGGAGATTTCATGGATGATTTTGATTACCAAAATAAACGTTACACTTTATCCCTGCCTTCAACAAATTTGTCAGAGCTATATTCCACAGCACGTCGTAGTCCAATTTCACTCACTTATTTCCATCATTGCTTGGATAATGGAAACTACTCAGTGAAGCTTCATTTTGCGGAGTTACAATTTACAGATGATCAGACATATACAAGTCTTGGAAGGCGGAAATTTGATATCTACATTCAGGATAGGTTGGTATTGGAGAATTTTGATATTGAAGAGAGGGCGGGAGGAGCTCGAAAACCAACAGAAATGCAGTTTTCTAACGTTAGTGTAATTAATCATGTCCTGGAGATCCGATTCTATTGGGCTGGAAAAGGGACAACTAGGATTCCTGAAAGAGGAAATTATGGTCCACTTATATCAGCTATTTCTGTTTATTCTGATCTTAAACATTGTTCAAACCGTGAAAGTGGTAAAAAGAAAACCGTAGCTATAGTTGTTGGAGTTATGGTTGGATTATTTTGCTTTGCTACAATCATCACAGTGGGGCTTCTTTGGTGGAAACGCACCCTCAGAGCAATCAGGCAGAGTAAAGGTGATCTTTCAGGAATAGAGGTGCAAACTGGAATTTTTACCCTGAAACAAATAAAAGCTGCCACCAATCATTTTGATTCTTCTAATAAAATTGGAGAAGGTGGTTTTGGCCCTGTTTATAAGGGCCAATTGGCTGATGGTACTATTGTAGCAATTAAGCAGCTCTCGTCCAAATCAAAGCAGGGAAATCGTGAATTTCTGAATGAGATAGGAATGATCTCTTGTTTGCAACACCCAAATCTAGTCAAGCTCCACGGATGCTGTATTGAAGGGGATCAATTGTTGTTGGTGTATGAATACCTGGAAAACAATAGTCTCGCCCGAGCGCTATTTGGTCCAGATTACTGTCGGCTTAATCTAGATTGGCCAACCAGGCTTAGAATATGTATCGGTATAGCGAAAGGCTTAGCATATCTCCACGAGGAATCTAGCCTCAAAATTGTTCACAGAGACATCAAAGCTACTAATGTGCTACTAGATGGCGAATTGAATCCTAAAATATCTGATTTTGGTTTGGCTAAGCTTGATGATGAAGAGAAGACTCACATCACCACCAGAGTGGCTGGGACCATAGGATACATGGCTCCAGAATATGCACTTTGGGGTTATCTGACTTACAAAGCAGATGTGTATAGTTTTGGAGTCGTGGCCTTGGAAATTATCAGTGGAAGAAGCAACAATGATTATGTACCAAGTGAAACTTGTGTTTGCCTTCTAGACTGGGCCTGTCACTTGCAACAATCTGGGAACCTCATGGAGATGGTTGATGAGAAGTTGAGGTCAGAAATCGACACGAAAGAAGCAGAAAACATGGTAAAAATAGCCCTTCTCTGCACCAATGCTTCGCCATCAGTAAGGCCTGCAATGTCGGAAGTGGTGAACATGCTCGAAGGACGAATGGCAATTCCAGACCTGATCCCGGAACCGAGTACTTACGCTGAAGATCTGAGGTTCAAGGCGATGAGAGATATGCGTAGACAGCAACAGAGCCAAAGCCTGTCTGAAAGCCAGACACAAAATTCCACAATGCAAACATTTGGATCTTCCTCTACATCTGGAAATGAGTTCTATGACATCAACCCAGAGCCAAGATCATCATCAACAACCTGA 3057 41.48 MMLAKSFFVFIVLAVDCFMFLRFVDSKLPQEEVDALQQITRTLGAVHWKFNSNTCDVEMFGITEKPPRGSEGKIACDCNLENSTTCHVVKIEFKNHNLPGVLPPEIVKLPYLQEVDLAYNYLHGNIPREWASMRLTSISLLVNRLSGEIPAELGNMTTLMNLTLEANQFTGAIPPQLGRLSNLQTLLLSSNQLTGTLPTTFAALDNLTNFRINDNNLNGTIPDFIQNWKLLERLELHASGLQGPIPAKISLLSNLKELRISDINGPKQDFPELINMTGMVKLVLRNCNIAGKIPSYVWTRPNMEMLDLSFNQLTGEVPEDINMERIRFLFLSGNMLSGNLPESILKDGTNVDLSYNNLTWQGPEQHVCRKNLNMNLNLFRSSSFGNTLQESLPCLKDSICSKYSKCWFINSGGNDLTLEVNNRNIRYNGDADVEGGAARFYIDPDSYWGLSSTGDFMDDFDYQNKRYTLSLPSTNLSELYSTARRSPISLTYFHHCLDNGNYSVKLHFAELQFTDDQTYTSLGRRKFDIYIQDRLVLENFDIEERAGGARKPTEMQFSNVSVINHVLEIRFYWAGKGTTRIPERGNYGPLISAISVYSDLKHCSNRESGKKKTVAIVVGVMVGLFCFATIITVGLLWWKRTLRAIRQSKGDLSGIEVQTGIFTLKQIKAATNHFDSSNKIGEGGFGPVYKGQLADGTIVAIKQLSSKSKQGNREFLNEIGMISCLQHPNLVKLHGCCIEGDQLLLVYEYLENNSLARALFGPDYCRLNLDWPTRLRICIGIAKGLAYLHEESSLKIVHRDIKATNVLLDGELNPKISDFGLAKLDDEEKTHITTRVAGTIGYMAPEYALWGYLTYKADVYSFGVVALEIISGRSNNDYVPSETCVCLLDWACHLQQSGNLMEMVDEKLRSEIDTKEAENMVKIALLCTNASPSVRPAMSEVVNMLEGRMAIPDLIPEPSTYAEDLRFKAMRDMRRQQQSQSLSESQTQNSTMQTFGSSSTSGNEFYDINPEPRSSSTT 1018
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7965531 7976206 + Lag0025038.1 Lac10g0993 583524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0993 1018 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 643 749 - -
Lac10g0993 1018 MobiDBLite consensus disorder prediction 974 1018 - -
Lac10g0993 1018 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 198 264 - -
Lac10g0993 1018 Pfam Leucine Rich Repeat 182 203 IPR001611 GO:0005515(InterPro)
Lac10g0993 1018 Pfam Leucine Rich Repeat 302 321 IPR001611 GO:0005515(InterPro)
Lac10g0993 1018 Pfam Leucine Rich Repeat 206 228 IPR001611 GO:0005515(InterPro)
Lac10g0993 1018 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 18 971 IPR051824 -
Lac10g0993 1018 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 266 387 - -
Lac10g0993 1018 Gene3D - 404 600 - -
Lac10g0993 1018 CDD STKc_IRAK 680 947 - -
Lac10g0993 1018 Gene3D Phosphorylase Kinase; domain 1 638 749 - -
Lac10g0993 1018 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 34 197 - -
Lac10g0993 1018 Pfam Protein tyrosine and serine/threonine kinase 677 945 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g0993 1018 Pfam Malectin domain 406 594 IPR021720 -
Lac10g0993 1018 Gene3D Transferase(Phosphotransferase) domain 1 750 951 - -
Lac10g0993 1018 Gene3D Ribonuclease Inhibitor 202 266 IPR032675 -
Lac10g0993 1018 SMART serkin_6 674 945 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0993 1018 Gene3D Ribonuclease Inhibitor 31 201 IPR032675 -
Lac10g0993 1018 ProSitePatterns Serine/Threonine protein kinases active-site signature. 796 808 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g0993 1018 SUPERFAMILY Protein kinase-like (PK-like) 657 947 IPR011009 -
Lac10g0993 1018 MobiDBLite consensus disorder prediction 972 1018 - -
Lac10g0993 1018 SUPERFAMILY L domain-like 83 319 - -
Lac10g0993 1018 Gene3D Ribonuclease Inhibitor 267 386 IPR032675 -
Lac10g0993 1018 ProSiteProfiles Protein kinase domain profile. 674 951 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0993 1018 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 404 599 - -
Lac10g0993 1018 FunFam Putative LRR receptor-like serine/threonine-protein kinase 750 956 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0993 Lac-Chr10:7965531 Lac2g1141 Lac-Chr2:9079483 1.20E-229 dispersed
Lac5g2500 Lac-Chr5:43542531 Lac10g0993 Lac-Chr10:7965531 4.10E-70 dispersed
Lac9g1524 Lac-Chr9:33961408 Lac10g0993 Lac-Chr10:7965531 3.80E-70 dispersed
Lac10g0993 Lac-Chr10:7965531 Lac2g1158 Lac-Chr2:9264824 8.50E-225 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85673 PF07714 PK_Tyr_Ser-Thr 4.90E-49 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0993 - - - 0.0