Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0994 ATGGAAACGAATAACAACGGGGTGAGGTTTCTACTGGGGAAGCAGTCGTCGATGGCGCCGGAGCGGCAGCCGGAGGAGGAGGCGGAGTTGGCGGAGGAGGGGGAGGAGATCGATCCAGGGGTGAGATTGATGTATTCGGCGAATGAAGGCGATTTGGAAGGGATTAAGGAGCTTTTAGATTCTGGAATTGATGTTAATTTTCACGATGCTGATAATCGGACGGCGCTTCATATTGCTGCTTGTCAAGGCTACTCGGAGATCGTCGATTTGTTGCTCCGGCGAGGCGCTGAGATTGACCCTAAAGATCGCTGGGGTAGTACGCCTCTTGCAGATGCTATATTCTACAAAAACCATGAAGTTATCAAATTGCTGGAAAAAAGGGGCGCAAAACATCTGATGGCTCCCATGCTCGTCAAGCATGCTCGTGAAGTCCCAGAATATGAAATTGATCCCAAAGAATTTGACTTCACAAACAGTGTCAACTTGACCAAGGGAACCTTCCATTTGGCATCATGGCGTGGAATCCAAGTTGCAGTGAAGGAGCTTCCCGAGGATGTGATTTCAGAGGAGGATAAAGTGAATGCATTTAGAGATGAGCTTGCATTGCTTCAGAAGATTCGGCATCCTAACGTCGTTCAATTTCTTGGCGCTGTCACTCAAAGTAGTCCTATGATGATTGTTACTGAATATTTGCCAAAGGGAGATCTTTGTCAACTTTTACAGAAAAAAGGAGCATTAAAACCAATTGTAGCTGTGAAATTTGCCCTTGATATTGCAAGGGGAATGAACTACTTGCACGAAAACAAACCTGCGCCGATCATCCACCGTGATCTCGAGCCATCAAACATATTGCGAGATGACACTGGAAACCTGAAAGTTGCAGACTTTGGAGTTAGCAAGTTGCTCACTGTCAAGGAGGATAAGCCTCTAATCTGTCAAGACACTGCTTGCCGATATGTCGCTCCAGAAGTTTTCAAAAACAATGGATACGATACTAAAGTGGATGTCTTCTCCTTTGCTTTAATTCTACAAGAGATGATCGAAGGGCAACCGCCATTTTCAACCAAGCAAGAAAATGCCATTCTTAAAGAGTATGCATCCGGAGTACGCCCAGCTTTCAAAGCTCCAGCTAAATGCTACGCGCATGGAATCAAAGAGTTGATTGTAGATTGCTGGAATGAGAAGCCATCAAAGAGACCAACTTTTAGACAGATTATCATGAGACTGGAAACCATTCATCACAGTCTTAGCCACAGAAGGCGTTGGAAGCTCCCAACGTTGAGATGCTTTCAGAATGCAGAGGCCAAGATAAGGAGAGACCATCTCTCAAGCAGCCGAAGCCTTTCATCGCGATCTGCAAGCAGCATATAA 1371 45.66 METNNNGVRFLLGKQSSMAPERQPEEEAELAEEGEEIDPGVRLMYSANEGDLEGIKELLDSGIDVNFHDADNRTALHIAACQGYSEIVDLLLRRGAEIDPKDRWGSTPLADAIFYKNHEVIKLLEKRGAKHLMAPMLVKHAREVPEYEIDPKEFDFTNSVNLTKGTFHLASWRGIQVAVKELPEDVISEEDKVNAFRDELALLQKIRHPNVVQFLGAVTQSSPMMIVTEYLPKGDLCQLLQKKGALKPIVAVKFALDIARGMNYLHENKPAPIIHRDLEPSNILRDDTGNLKVADFGVSKLLTVKEDKPLICQDTACRYVAPEVFKNNGYDTKVDVFSFALILQEMIEGQPPFSTKQENAILKEYASGVRPAFKAPAKCYAHGIKELIVDCWNEKPSKRPTFRQIIMRLETIHHSLSHRRRWKLPTLRCFQNAEAKIRRDHLSSSRSLSSRSASSI 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7987654 7992072 + Lag0025039.1 Lac10g0994 583525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0994 456 FunFam serine/threonine-protein kinase STY46-like 149 232 - -
Lac10g0994 456 MobiDBLite consensus disorder prediction 1 34 - -
Lac10g0994 456 ProSiteProfiles Ankyrin repeat region circular profile. 71 103 - -
Lac10g0994 456 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 69 410 IPR051681 GO:0004674(PANTHER)
Lac10g0994 456 FunFam Integrin-linked protein kinase family 22 147 - -
Lac10g0994 456 Pfam Protein tyrosine and serine/threonine kinase 168 409 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g0994 456 Gene3D Phosphorylase Kinase; domain 1 155 231 - -
Lac10g0994 456 FunFam Os01g0748600 protein 142 429 - -
Lac10g0994 456 SUPERFAMILY Ankyrin repeat 42 131 IPR036770 -
Lac10g0994 456 Gene3D Transferase(Phosphotransferase) domain 1 232 451 - -
Lac10g0994 456 Gene3D - 12 144 IPR036770 -
Lac10g0994 456 ProSiteProfiles Ankyrin repeat profile. 71 103 IPR002110 GO:0005515(InterPro)
Lac10g0994 456 PIRSF ILK 2 431 - -
Lac10g0994 456 ProSiteProfiles Protein kinase domain profile. 121 416 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g0994 456 Pfam Ankyrin repeats (3 copies) 43 130 IPR002110 GO:0005515(InterPro)
Lac10g0994 456 SUPERFAMILY Protein kinase-like (PK-like) 164 419 IPR011009 -
Lac10g0994 456 SMART ANK_2a 38 67 IPR002110 GO:0005515(InterPro)
Lac10g0994 456 SMART ANK_2a 71 100 IPR002110 GO:0005515(InterPro)
Lac10g0994 456 SMART ANK_2a 104 133 IPR002110 GO:0005515(InterPro)
Lac10g0994 456 CDD STKc_MAP3K-like 165 409 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0994 Lac-Chr10:7987654 Lac9g2245 Lac-Chr9:41820390 4.60E-138 dispersed
Lac8g1813 Lac-Chr8:36409726 Lac10g0994 Lac-Chr10:7987654 3.70E-07 transposed
Lac1g3451 Lac-Chr1:53873252 Lac10g0994 Lac-Chr10:7987654 7.40E-152 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85674 PF07714 PK_Tyr_Ser-Thr 5.20E-55 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0994 - - - 0.0