Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac10g0998 | ATGGGTTACCCAGATCAGAATGAAGCCTCTCAGAGAAGAACAGGTAGAGGGAAGATCGAAATCAAGAGGATCGAAAACACCACGAATCGCCAAGTTACTTTCTGTAAAAGGAGAAATGGATTGCTTAAGAAGGCTTATGAGCTTTCTGTTCTTTGTGATGCTGAGGTTGCTCTTGTTGTCTTCTCCACCCGTGGTCGCCTCTATGAATATGCCAACAACAGTGTTAGGGCTACGATTTCAAGGTACAAAAAGGCATGTTCCGATCCCTCCAGCGCCGGATCCGTTTCTGAAGCCAATACTCAGTTCTACCAGCAAGAATCGGCGAAGCTGCGAGCTCAAATCGGCAATTTGCAAACCCTAAACAGGAATTTGTTGGGCGATTCGATAAGTTCTTTGTCGGTGAAGGATCTCAAAAGTCTCGAGGTCAAACTGGAGAAAGGAATTGCCCGAATTCGATCCAGAAAGAATGAGCTTCTGTTTGCGGAGATTGAGTACATGCAGAAAAGGGAAATGGAACTGCACAATAACAACCAGCTGATACGAGCAAAGATAGCAGAGATAGAGAGAAGCCAACAAAATACAGATGCAATAGCAGCAGCAACAACAACAGAAGGATCGGGAGCCCCAAATTTTGAGGGGCAGCAATACGACCCAACAAACTACTTTGAACAACAACCAAGTCACTTCCCTCGCCACAATGACCATATATCTCTCCAACTCGTGTAA | 726 | 45.18 | MGYPDQNEASQRRTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRLYEYANNSVRATISRYKKACSDPSSAGSVSEANTQFYQQESAKLRAQIGNLQTLNRNLLGDSISSLSVKDLKSLEVKLEKGIARIRSRKNELLFAEIEYMQKREMELHNNNQLIRAKIAEIERSQQNTDAIAAATTTEGSGAPNFEGQQYDPTNYFEQQPSHFPRHNDHISLQLV | 241 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 8014426 | 8020195 | - | Lag0025043.1 | Lac10g0998 | 583529 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac10g0998 | 241 | Gene3D | - | 26 | 92 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac10g0998 | 241 | SMART | madsneu2 | 14 | 73 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac10g0998 | 241 | CDD | MADS_MEF2_like | 15 | 88 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Lac10g0998 | 241 | ProSiteProfiles | MADS-box domain profile. | 14 | 74 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac10g0998 | 241 | PRINTS | MADS domain signature | 51 | 72 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac10g0998 | 241 | PRINTS | MADS domain signature | 36 | 51 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac10g0998 | 241 | PRINTS | MADS domain signature | 16 | 36 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac10g0998 | 241 | Pfam | K-box region | 97 | 184 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Lac10g0998 | 241 | SUPERFAMILY | SRF-like | 15 | 86 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac10g0998 | 241 | ProSitePatterns | MADS-box domain signature. | 16 | 70 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac10g0998 | 241 | ProSiteProfiles | K-box domain profile. | 100 | 190 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Lac10g0998 | 241 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 15 | 208 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Lac10g0998 | 241 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 23 | 70 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Lac10g0998 | 241 | FunFam | agamous-like MADS-box protein AGL11 | 26 | 109 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac10g0998 | Lac-Chr10:8014426 | Lac12g1856 | Lac-Chr12:35022565 | 1.50E-39 | dispersed | |
Lac1g3453 | Lac-Chr1:53893475 | Lac10g0998 | Lac-Chr10:8014426 | 8.40E-80 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
22763 | PF01486 | K-box | 1.00E-25 | No_clan | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac10g0998 | K09264 | - | csv:101205366 | 353.214 |