Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g0998 ATGGGTTACCCAGATCAGAATGAAGCCTCTCAGAGAAGAACAGGTAGAGGGAAGATCGAAATCAAGAGGATCGAAAACACCACGAATCGCCAAGTTACTTTCTGTAAAAGGAGAAATGGATTGCTTAAGAAGGCTTATGAGCTTTCTGTTCTTTGTGATGCTGAGGTTGCTCTTGTTGTCTTCTCCACCCGTGGTCGCCTCTATGAATATGCCAACAACAGTGTTAGGGCTACGATTTCAAGGTACAAAAAGGCATGTTCCGATCCCTCCAGCGCCGGATCCGTTTCTGAAGCCAATACTCAGTTCTACCAGCAAGAATCGGCGAAGCTGCGAGCTCAAATCGGCAATTTGCAAACCCTAAACAGGAATTTGTTGGGCGATTCGATAAGTTCTTTGTCGGTGAAGGATCTCAAAAGTCTCGAGGTCAAACTGGAGAAAGGAATTGCCCGAATTCGATCCAGAAAGAATGAGCTTCTGTTTGCGGAGATTGAGTACATGCAGAAAAGGGAAATGGAACTGCACAATAACAACCAGCTGATACGAGCAAAGATAGCAGAGATAGAGAGAAGCCAACAAAATACAGATGCAATAGCAGCAGCAACAACAACAGAAGGATCGGGAGCCCCAAATTTTGAGGGGCAGCAATACGACCCAACAAACTACTTTGAACAACAACCAAGTCACTTCCCTCGCCACAATGACCATATATCTCTCCAACTCGTGTAA 726 45.18 MGYPDQNEASQRRTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRLYEYANNSVRATISRYKKACSDPSSAGSVSEANTQFYQQESAKLRAQIGNLQTLNRNLLGDSISSLSVKDLKSLEVKLEKGIARIRSRKNELLFAEIEYMQKREMELHNNNQLIRAKIAEIERSQQNTDAIAAATTTEGSGAPNFEGQQYDPTNYFEQQPSHFPRHNDHISLQLV 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8014426 8020195 - Lag0025043.1 Lac10g0998 583529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g0998 241 Gene3D - 26 92 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac10g0998 241 SMART madsneu2 14 73 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac10g0998 241 CDD MADS_MEF2_like 15 88 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Lac10g0998 241 ProSiteProfiles MADS-box domain profile. 14 74 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac10g0998 241 PRINTS MADS domain signature 51 72 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac10g0998 241 PRINTS MADS domain signature 36 51 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac10g0998 241 PRINTS MADS domain signature 16 36 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac10g0998 241 Pfam K-box region 97 184 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lac10g0998 241 SUPERFAMILY SRF-like 15 86 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac10g0998 241 ProSitePatterns MADS-box domain signature. 16 70 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac10g0998 241 ProSiteProfiles K-box domain profile. 100 190 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lac10g0998 241 PANTHER SERUM RESPONSE FACTOR HOMOLOG 15 208 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lac10g0998 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 23 70 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac10g0998 241 FunFam agamous-like MADS-box protein AGL11 26 109 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0998 Lac-Chr10:8014426 Lac12g1856 Lac-Chr12:35022565 1.50E-39 dispersed
Lac1g3453 Lac-Chr1:53893475 Lac10g0998 Lac-Chr10:8014426 8.40E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22763 PF01486 K-box 1.00E-25 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g0998 K09264 - csv:101205366 353.214