Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac10g1001 | ATGCTGTCAAACAACCATAACAACAGTCCTCCTACTCCTAGAACCAGATTGGAAAGGCTTCTTAGGGAAAGAGAGCTCAGGAGATCAAACCGGTCTGCTCTCAATGAAGATGCTTACAGTCTGGGAGAATTCAACAGTTACGATCTCTTCACTTTCTCTGGTGATAGTTGTGGGTTATTTAACGAGGATGAGGTCTTAGACGGGGTATCAGTGGTAAAAGACATCCTTGAAGGATTCCAAAGGTCAGAAGGGAGGAGTTCTAAGCAACGCCTTCTAGTTGTAGCAAACAGGTTGCCTGTGTCTGCTATTAGGAAAGGGAAGGAGACATGGCATCTTGAAATTAGCGTCGGTGGTTTAGTCAGTGCACTTTTAGGACTAAAGGAGTTTGAGGCAAGATGGATTGGTTGGGCTGGTGTGAATGTACCTGATGAAGTCGGACAGAGAGCCCTAGAGAAAGCATTGGCTGAAAAGAAATGCATACCAGTGTTTCTTGACGAGGAGATCGTTCATCAGTATTACAATGGCTACTGTAACAACATCTTGTGGCCTCTGTTTCATTATCTTGGTCTTCCACAAGAAGATCGCCTTGCAACAACACGAAGTTTTCAGTCACAGTTTGATGCATATAAGAAGGCAAACCAATTGTTTGCTGATGTTGTAAACAAATATTATGAAGAGGGAGATGTTGTTTGGTGTCATGATTATCACTTGATGTTTCTACCAAAATGTCTTAAAGAGCATAATAGTAAGATGAAAGTTGGTTGGTTCCTTCATACCCCATTTCCATCCTCAGAAATACATAGAACTCTACCATCTCGTTCAGAGCTTTTGAGATCTGTTCTTGCAGCTGATTTAGTTGGTTTCCACACATATGATTATGCCAGGCATTTTGTTAGTGCTTGCACCCGTATTCTTGGATTGGAGGGTACACCTGAAGGAGTAGAGGATCAAGGAAAACTAACTCGCATAGCTGCTTTTCCTATTGGAATAGATTCTGACCGATTCATTCGAGCTCTTAAACTCCCTCAAGTCCAGGATCACATTAAAGAACTTCAAGAAAGATTTGCAGGACGAAAGGTAATGCTGGGTGTTGATCGTCTTGATATGATTAAGGGAATACCCCAAAAGATTTTGGCATTTGAAAAATTTCTTGAAGAAAATCCAAAGTGGCGTGATAAAGTAGTTCTGCTGCAAATTGCAGTGCCAACAAGGACAGATGTTCCCGAGTATCAAAAGCTAACGAGTCAGGTTCATGAGATTGTTGGGCGTATTAATGGGAGATTTGGCACTCTTACTGCAGTTCCAATACATCATCTGGATCGTTCACTTGACTTCCATGCATTATGTGCTTTATATGCTGTCACTGATGTGGCTTTAGTTACATCTTTAAGAGATGGAATGAATCTTGTGAGCTATGAGTTCGTTGCCTGCCAAGCTTCCAAGAAAGGTGTTCTTATTCTAAGTGAGTTTGCAGGTGCAGCACAGTCATTAGGTGCTGGTGCTGTTTTAGTGAATCCATGGAATATCACTGAAGTTGCTGCTTCAATTGGTTATGCTTTGAATATGCAAGCTGATGAAAGAGAAAGGCGACACCATCATAACTTCATGCATGTTACAACTCACACTTCCCAAGAATGGGCTGCAACATTTGTGAGCGAACTCAATGACACCATAGTTGAAGCTCAGATAAGGACCAGACAGATACCACCTTTACTTCCCATTGGAGAGGCAGTGAACTGTTATTTGCGATCACACAATCGATTGGTTATTCTGGGTTTCAATGTTACCTTAACTGAACCTGTTGATGCCCTTGGAAGAAGATGTGGCCAAATAAGAGACATGGATCTTAAAGTACATCCAAATATGAGAGAGCCCTTGAAGAAGCTTTGCGATGACCAGAATACGACAGTGGTTGTCCTTAGTGGGAGTGATAGAAGTGTTCTAGATGATAATTTCGGCGACTACAACATGTGGTTGGCAGCGGAAAACGGGATGTTCTTACGTCCTACAAAGGGAGAATGGATGACGACCATGCCTGAAAATTTAAATATGGACTGGGTTGAGAGTGTTAAGCATGTTTTTGAGTATTTTACCGAAAGAACTCCTAGATCCCACTTTGAGCTTCGTGAAACTTCACTGGTGTGGAATTACAAATACGCAGATGTTGAGTTTGGAAGACTTCAAGCAAGGGACTTGTTGCAGCATCTATGGACTGGTCCAATCTCAAATGCATCAGTTGATGTTGTCCAAGGCAGTCGATCAGTCGAGGTTCGAGCAGTTGGTGTTACAAAGGGTGCTGCCATTGATCGAATATTGGGAGAAATAGTTCGTGATAAAGGCATAAACAAGCCTATTGACTATGTTCTCTGTGTTGGACACTTCCTAACGAAGGATGAAGATGTCTACACATTTTTCGAGCCCGACCTTCCTTCTGAAGTGCCACATACAGCAAGAGCAACAGTCACCAATCCTTTCGGAGTACCAGTGCCAAAGACCCCAAGCAATGGAGTCCCACCCAAGTCAGCACGCCTCAAGAAACAGCGTTCCCTTTCCATTTTAGAAAGAAGAGCAAGCAGCCATGGAAGTGCAGTCTTCTGGAGGCCTATAGTACAGGATCGACTGTCGCTGCACGAGGGATCATCTGTTCTTGATCTCAAGGGTGACAATTACTTCTCCTGTGCCGTGGGGCGGAAGCGATCAAATGCGAGATATCTTCTTGGATCATCAGATGATGTTGTCACACTTGTGAAGGAGTTGACAGAATGTTCAAGTACGAGTTAA | 2781 | 42.93 | MLSNNHNNSPPTPRTRLERLLRERELRRSNRSALNEDAYSLGEFNSYDLFTFSGDSCGLFNEDEVLDGVSVVKDILEGFQRSEGRSSKQRLLVVANRLPVSAIRKGKETWHLEISVGGLVSALLGLKEFEARWIGWAGVNVPDEVGQRALEKALAEKKCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFDAYKKANQLFADVVNKYYEEGDVVWCHDYHLMFLPKCLKEHNSKMKVGWFLHTPFPSSEIHRTLPSRSELLRSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGKLTRIAAFPIGIDSDRFIRALKLPQVQDHIKELQERFAGRKVMLGVDRLDMIKGIPQKILAFEKFLEENPKWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQASKKGVLILSEFAGAAQSLGAGAVLVNPWNITEVAASIGYALNMQADERERRHHHNFMHVTTHTSQEWAATFVSELNDTIVEAQIRTRQIPPLLPIGEAVNCYLRSHNRLVILGFNVTLTEPVDALGRRCGQIRDMDLKVHPNMREPLKKLCDDQNTTVVVLSGSDRSVLDDNFGDYNMWLAAENGMFLRPTKGEWMTTMPENLNMDWVESVKHVFEYFTERTPRSHFELRETSLVWNYKYADVEFGRLQARDLLQHLWTGPISNASVDVVQGSRSVEVRAVGVTKGAAIDRILGEIVRDKGINKPIDYVLCVGHFLTKDEDVYTFFEPDLPSEVPHTARATVTNPFGVPVPKTPSNGVPPKSARLKKQRSLSILERRASSHGSAVFWRPIVQDRLSLHEGSSVLDLKGDNYFSCAVGRKRSNARYLLGSSDDVVTLVKELTECSSTS | 926 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 8040725 | 8049472 | + | Lag0025046.1 | Lac10g1001 | 583532 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac10g1001 | 926 | Gene3D | Glycogen Phosphorylase B; | 82 | 336 | - | - | |
Lac10g1001 | 926 | Gene3D | - | 680 | 760 | - | - | |
Lac10g1001 | 926 | SUPERFAMILY | UDP-Glycosyltransferase/glycogen phosphorylase | 89 | 558 | - | - | |
Lac10g1001 | 926 | Gene3D | Glycogen Phosphorylase B; | 337 | 539 | - | - | |
Lac10g1001 | 926 | CDD | GT20_TPS | 90 | 555 | IPR001830 | GO:0003824(InterPro)|GO:0005992(InterPro) | |
Lac10g1001 | 926 | FunFam | alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 | 82 | 336 | - | - | |
Lac10g1001 | 926 | Pfam | Glycosyltransferase family 20 | 90 | 555 | IPR001830 | GO:0003824(InterPro)|GO:0005992(InterPro) | |
Lac10g1001 | 926 | FunFam | Alpha,alpha-trehalose-phosphate synthase | 614 | 683 | - | - | |
Lac10g1001 | 926 | Pfam | Trehalose-phosphatase | 613 | 814 | IPR003337 | GO:0005992(InterPro) | |
Lac10g1001 | 926 | CDD | HAD_TPP | 588 | 821 | - | - | |
Lac10g1001 | 926 | Gene3D | - | 614 | 803 | IPR023214 | - | |
Lac10g1001 | 926 | NCBIfam | alpha,alpha-trehalose-phosphate synthase (UDP-forming) | 90 | 555 | IPR012766 | GO:0003825(InterPro)|GO:0005992(InterPro) | |
Lac10g1001 | 926 | SUPERFAMILY | HAD-like | 614 | 918 | IPR036412 | - | |
Lac10g1001 | 926 | FunFam | Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 | 680 | 760 | - | - | |
Lac10g1001 | 926 | FunFam | alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like | 337 | 539 | - | - | |
Lac10g1001 | 926 | PANTHER | TREHALOSE-6-PHOSPHATE SYNTHASE | 83 | 921 | IPR001830 | GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac10g1001 | Lac-Chr10:8040725 | Lac13g1298 | Lac-Chr13:11938465 | 2.30E-123 | dispersed | |
Lac2g1136 | Lac-Chr2:9028314 | Lac10g1001 | Lac-Chr10:8040725 | 0.00E+00 | transposed | |
Lac3g2016 | Lac-Chr3:23809725 | Lac10g1001 | Lac-Chr10:8040725 | 4.10E-38 | transposed | |
Lac10g1001 | Lac-Chr10:8040725 | Lac12g0751 | Lac-Chr12:7898140 | 8.00E-121 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac10g1001 | K16055 | - | csv:101213690 | 1704.11 |