Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g1001 ATGCTGTCAAACAACCATAACAACAGTCCTCCTACTCCTAGAACCAGATTGGAAAGGCTTCTTAGGGAAAGAGAGCTCAGGAGATCAAACCGGTCTGCTCTCAATGAAGATGCTTACAGTCTGGGAGAATTCAACAGTTACGATCTCTTCACTTTCTCTGGTGATAGTTGTGGGTTATTTAACGAGGATGAGGTCTTAGACGGGGTATCAGTGGTAAAAGACATCCTTGAAGGATTCCAAAGGTCAGAAGGGAGGAGTTCTAAGCAACGCCTTCTAGTTGTAGCAAACAGGTTGCCTGTGTCTGCTATTAGGAAAGGGAAGGAGACATGGCATCTTGAAATTAGCGTCGGTGGTTTAGTCAGTGCACTTTTAGGACTAAAGGAGTTTGAGGCAAGATGGATTGGTTGGGCTGGTGTGAATGTACCTGATGAAGTCGGACAGAGAGCCCTAGAGAAAGCATTGGCTGAAAAGAAATGCATACCAGTGTTTCTTGACGAGGAGATCGTTCATCAGTATTACAATGGCTACTGTAACAACATCTTGTGGCCTCTGTTTCATTATCTTGGTCTTCCACAAGAAGATCGCCTTGCAACAACACGAAGTTTTCAGTCACAGTTTGATGCATATAAGAAGGCAAACCAATTGTTTGCTGATGTTGTAAACAAATATTATGAAGAGGGAGATGTTGTTTGGTGTCATGATTATCACTTGATGTTTCTACCAAAATGTCTTAAAGAGCATAATAGTAAGATGAAAGTTGGTTGGTTCCTTCATACCCCATTTCCATCCTCAGAAATACATAGAACTCTACCATCTCGTTCAGAGCTTTTGAGATCTGTTCTTGCAGCTGATTTAGTTGGTTTCCACACATATGATTATGCCAGGCATTTTGTTAGTGCTTGCACCCGTATTCTTGGATTGGAGGGTACACCTGAAGGAGTAGAGGATCAAGGAAAACTAACTCGCATAGCTGCTTTTCCTATTGGAATAGATTCTGACCGATTCATTCGAGCTCTTAAACTCCCTCAAGTCCAGGATCACATTAAAGAACTTCAAGAAAGATTTGCAGGACGAAAGGTAATGCTGGGTGTTGATCGTCTTGATATGATTAAGGGAATACCCCAAAAGATTTTGGCATTTGAAAAATTTCTTGAAGAAAATCCAAAGTGGCGTGATAAAGTAGTTCTGCTGCAAATTGCAGTGCCAACAAGGACAGATGTTCCCGAGTATCAAAAGCTAACGAGTCAGGTTCATGAGATTGTTGGGCGTATTAATGGGAGATTTGGCACTCTTACTGCAGTTCCAATACATCATCTGGATCGTTCACTTGACTTCCATGCATTATGTGCTTTATATGCTGTCACTGATGTGGCTTTAGTTACATCTTTAAGAGATGGAATGAATCTTGTGAGCTATGAGTTCGTTGCCTGCCAAGCTTCCAAGAAAGGTGTTCTTATTCTAAGTGAGTTTGCAGGTGCAGCACAGTCATTAGGTGCTGGTGCTGTTTTAGTGAATCCATGGAATATCACTGAAGTTGCTGCTTCAATTGGTTATGCTTTGAATATGCAAGCTGATGAAAGAGAAAGGCGACACCATCATAACTTCATGCATGTTACAACTCACACTTCCCAAGAATGGGCTGCAACATTTGTGAGCGAACTCAATGACACCATAGTTGAAGCTCAGATAAGGACCAGACAGATACCACCTTTACTTCCCATTGGAGAGGCAGTGAACTGTTATTTGCGATCACACAATCGATTGGTTATTCTGGGTTTCAATGTTACCTTAACTGAACCTGTTGATGCCCTTGGAAGAAGATGTGGCCAAATAAGAGACATGGATCTTAAAGTACATCCAAATATGAGAGAGCCCTTGAAGAAGCTTTGCGATGACCAGAATACGACAGTGGTTGTCCTTAGTGGGAGTGATAGAAGTGTTCTAGATGATAATTTCGGCGACTACAACATGTGGTTGGCAGCGGAAAACGGGATGTTCTTACGTCCTACAAAGGGAGAATGGATGACGACCATGCCTGAAAATTTAAATATGGACTGGGTTGAGAGTGTTAAGCATGTTTTTGAGTATTTTACCGAAAGAACTCCTAGATCCCACTTTGAGCTTCGTGAAACTTCACTGGTGTGGAATTACAAATACGCAGATGTTGAGTTTGGAAGACTTCAAGCAAGGGACTTGTTGCAGCATCTATGGACTGGTCCAATCTCAAATGCATCAGTTGATGTTGTCCAAGGCAGTCGATCAGTCGAGGTTCGAGCAGTTGGTGTTACAAAGGGTGCTGCCATTGATCGAATATTGGGAGAAATAGTTCGTGATAAAGGCATAAACAAGCCTATTGACTATGTTCTCTGTGTTGGACACTTCCTAACGAAGGATGAAGATGTCTACACATTTTTCGAGCCCGACCTTCCTTCTGAAGTGCCACATACAGCAAGAGCAACAGTCACCAATCCTTTCGGAGTACCAGTGCCAAAGACCCCAAGCAATGGAGTCCCACCCAAGTCAGCACGCCTCAAGAAACAGCGTTCCCTTTCCATTTTAGAAAGAAGAGCAAGCAGCCATGGAAGTGCAGTCTTCTGGAGGCCTATAGTACAGGATCGACTGTCGCTGCACGAGGGATCATCTGTTCTTGATCTCAAGGGTGACAATTACTTCTCCTGTGCCGTGGGGCGGAAGCGATCAAATGCGAGATATCTTCTTGGATCATCAGATGATGTTGTCACACTTGTGAAGGAGTTGACAGAATGTTCAAGTACGAGTTAA 2781 42.93 MLSNNHNNSPPTPRTRLERLLRERELRRSNRSALNEDAYSLGEFNSYDLFTFSGDSCGLFNEDEVLDGVSVVKDILEGFQRSEGRSSKQRLLVVANRLPVSAIRKGKETWHLEISVGGLVSALLGLKEFEARWIGWAGVNVPDEVGQRALEKALAEKKCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFDAYKKANQLFADVVNKYYEEGDVVWCHDYHLMFLPKCLKEHNSKMKVGWFLHTPFPSSEIHRTLPSRSELLRSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGKLTRIAAFPIGIDSDRFIRALKLPQVQDHIKELQERFAGRKVMLGVDRLDMIKGIPQKILAFEKFLEENPKWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQASKKGVLILSEFAGAAQSLGAGAVLVNPWNITEVAASIGYALNMQADERERRHHHNFMHVTTHTSQEWAATFVSELNDTIVEAQIRTRQIPPLLPIGEAVNCYLRSHNRLVILGFNVTLTEPVDALGRRCGQIRDMDLKVHPNMREPLKKLCDDQNTTVVVLSGSDRSVLDDNFGDYNMWLAAENGMFLRPTKGEWMTTMPENLNMDWVESVKHVFEYFTERTPRSHFELRETSLVWNYKYADVEFGRLQARDLLQHLWTGPISNASVDVVQGSRSVEVRAVGVTKGAAIDRILGEIVRDKGINKPIDYVLCVGHFLTKDEDVYTFFEPDLPSEVPHTARATVTNPFGVPVPKTPSNGVPPKSARLKKQRSLSILERRASSHGSAVFWRPIVQDRLSLHEGSSVLDLKGDNYFSCAVGRKRSNARYLLGSSDDVVTLVKELTECSSTS 926
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8040725 8049472 + Lag0025046.1 Lac10g1001 583532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g1001 926 Gene3D Glycogen Phosphorylase B; 82 336 - -
Lac10g1001 926 Gene3D - 680 760 - -
Lac10g1001 926 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 89 558 - -
Lac10g1001 926 Gene3D Glycogen Phosphorylase B; 337 539 - -
Lac10g1001 926 CDD GT20_TPS 90 555 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Lac10g1001 926 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 82 336 - -
Lac10g1001 926 Pfam Glycosyltransferase family 20 90 555 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Lac10g1001 926 FunFam Alpha,alpha-trehalose-phosphate synthase 614 683 - -
Lac10g1001 926 Pfam Trehalose-phosphatase 613 814 IPR003337 GO:0005992(InterPro)
Lac10g1001 926 CDD HAD_TPP 588 821 - -
Lac10g1001 926 Gene3D - 614 803 IPR023214 -
Lac10g1001 926 NCBIfam alpha,alpha-trehalose-phosphate synthase (UDP-forming) 90 555 IPR012766 GO:0003825(InterPro)|GO:0005992(InterPro)
Lac10g1001 926 SUPERFAMILY HAD-like 614 918 IPR036412 -
Lac10g1001 926 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 680 760 - -
Lac10g1001 926 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 337 539 - -
Lac10g1001 926 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 83 921 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g1001 Lac-Chr10:8040725 Lac13g1298 Lac-Chr13:11938465 2.30E-123 dispersed
Lac2g1136 Lac-Chr2:9028314 Lac10g1001 Lac-Chr10:8040725 0.00E+00 transposed
Lac3g2016 Lac-Chr3:23809725 Lac10g1001 Lac-Chr10:8040725 4.10E-38 transposed
Lac10g1001 Lac-Chr10:8040725 Lac12g0751 Lac-Chr12:7898140 8.00E-121 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g1001 K16055 - csv:101213690 1704.11