Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g1005 ATGGAAGCCATAGTTGCTGTAAGGTTCATGGAGCTTCGAGTCGCTGTTCGTGAAAGATTTGCCCGATTCGAAGGCGCCGTAGGATTTTGTGCATCGGTTAATATTTCAGGTTTGGCTGAGGGAATGAAGCAACTGATACGCTCAATCCCACAACGAAGCAGCGAAAGAAAAATGGTTGTCGAAGAGACGATCAAAGCTACATCGACGGAAGATCTTTCCAATTCCATCGCAAATCAAAACCCTAGGGGACGAGCCGGTGAGGAAGACGAGGAACTTGAGGAAGGAGAGATCGTCGGCGACGACGACCTCGACTCGTCCAATTTATCGCCGGCGATAGTGCACCAGCCTCACCCTCTGGAGCACTCTTGGACCTTCTGGTTCGATAACCCCTCTGCCAAATCCAAACAGGCCACCTGGGGTGCGTCTATCCGACCGATCTATACCTTCTCTACTGTTGAGGAGTTTTGGAGTGTTTACAACAATATTCATCATCCAAGCAAATTGGCATTGAGGGCAGATTTGTACTGCTTTAAACATAAAATTGAGCCTAAATGGGAGGATCCTGTTTGTGCGAATGGAGGGAAATGGACTGTAAACTTTTCAAGGGGAAAATCTGATAATGGCTGGCTATACACGCTACTTGCTATGATCGGAGAACAGTTTGATTGTGGTGATGAAATTTGTGGAGCGGTTGTTAATGTTAGATCTGGGCAGGATAAGATATCAATTTGGACAAAGAATGCTTCCAATGAAGCTGCACAGGCGAGCATTGGAAAACAGTGGAAAGAGTTTCTCGATTACAACGACAGCATTGGCTTTATATTCCACGACGATGCAAAGAAATTCGACAGACATGCGAAGAACCGATATTCGGGGCTGTTACCGCTGCTCAAGTCGATAATGGTGCCGATCCACATCAAGGATTTGGAGGGTTCTTCTGTGGCGATCGATACCTATTCTTGGCTCCACAAAGGCGCTTTCTCCTGCAGCAAAGAGCTCTGCAATGGCCTTCCCACCTCCAAGCACATAGATTACTGTATGCATAGAATAAATCTACTACGGCACTATGGAGTAAAACCTGTTCTTGTCTTTGATGGAGGTCTTCTTCCAATGAAGAATGAGCAAGAAATCAAGCGTGCAAGGATGAGAAAAGAAAATCTTGCACGTGCAATAGAACATGAAACGAATGGCAATTCTGCTGCTGCCTACGAGTGTTACCAGAAGGCTGTTGATATAACGCCTTTGATCGCCCGTGAACTAATTCAAGTGTTAAAGCGAGAGAATATATCGTATGTTGTGGCACCTTATGAGGCAGATGCTCAAATGACCTTCTTGGCCATCAGCAATCAGGTTGATGCTGTTCTTACTGAGGACTCTGATCTAATACCGTTTGGCTGTCCAAGGATTATCTTTAAAATGGACAAATTTGGACAAGGAGTTGAGTTTCGATATGACTTGTTACCAAAGAACAAGGACTTGAGTTTTGTTGGATTTACGAAACAGATGATTCTTGAGATGTGCATTTTGAGTGGTTGTGATTATTTACAGTCATTGCCAGGAATGGGACTTAAAAGGGCTCATGCACTTATTAAGAAATTTTTAAGTTATGACAAGGTAATTAGACACTTGAGGTATAACACAGTTTCGGTTCCTCCTCTTTATGAAGAATCATTCAAGAAAGCAATATTGACTTTTCACCATCAACGGGTTTACGACCCTATCACCGAAGATATTGAGCAGAATATCAATTCTGGAGTTGTGCATGAAAGACCTTACAAAATAAAAGAATTTAATGCTGGTAGTGTAAAGAAAAAGTTGGATCTACCTGTGCAGAAGAATGTCCTTACGAAATACTTTTTGAAAGTGGGGGTCAAGTATTTCTTAACACCAAAAGGTTTTGCTTCTCTTGAAGCCAAGAGAAAATTTAGGGCGCCAAAACAATCAGCTAATCACCAAAGCTTCAGGGATGACTCCTCAAGTAGTGCCGAGGAGCCGGTTGGTCCTGAAGATAGTTGCCCTCCAGCTTCTACTCATCGCTGTGAAAATTTAGGGGGTTGTCTATCTACTTATCCTGTAGGAAATGATAATGCAGATGGAGTTTCCCTTTCTGATTCTTGCAGACAAGATATGGTTAATAAGACGGAAGAAGCGGAGCATATTTTACTGCAGCAACACACTCAATTAATCCATAAGCCTTGTGTTACGCTGCATAAGGGACCCTATTGCAAGAATCTTTCTGATACCATTGGAGAAAAAGTGAGGAAAGAGAACAAAAGGGTCATTGTAAGGAGTTCTTACTTCAAGCATAAGCCGGAAAGCAATGATGAACAGGAGAACAACCAAAAAGTCTCTGACCGTAATAATGCAGCTGTTGATATGCATGAGACAGCCACTCCCGAGGTTGCCTCTTTTACTAGTAATTCTTGTGACGGTTCAATCAAGAAAAGGAAAGCCTCCCCAGACGAAAACACTCAAAGGGATAATGTGAAAACTAAGCATTTGTGTCAGGAAACTTTGCAACCTGATCATGATGAAATAGTTTTGGAGACAAAAACTGAAGGAAAATTTGGATCCAACATTTCTCACTTAAGTCATTACTCAGACATAGCAGAGAAATCGATGGAACGATTTGTTTCAGTAATATCGTCATTTCGATTCTCTTCGGGGTCTCGAGCCAGTGGTCTCCGAGCCCCTTTGAAAGATGTTCAGAACAACAATACCAATAGGTTGGCTACTCCAATGGACTTCAGCCAATTTGCTTATGAACCAAATAAGAACAGGGCTCCCTTCCGATTCCGAAAAGGCAGACGTTGA 2814 42.79 MEAIVAVRFMELRVAVRERFARFEGAVGFCASVNISGLAEGMKQLIRSIPQRSSERKMVVEETIKATSTEDLSNSIANQNPRGRAGEEDEELEEGEIVGDDDLDSSNLSPAIVHQPHPLEHSWTFWFDNPSAKSKQATWGASIRPIYTFSTVEEFWSVYNNIHHPSKLALRADLYCFKHKIEPKWEDPVCANGGKWTVNFSRGKSDNGWLYTLLAMIGEQFDCGDEICGAVVNVRSGQDKISIWTKNASNEAAQASIGKQWKEFLDYNDSIGFIFHDDAKKFDRHAKNRYSGLLPLLKSIMVPIHIKDLEGSSVAIDTYSWLHKGAFSCSKELCNGLPTSKHIDYCMHRINLLRHYGVKPVLVFDGGLLPMKNEQEIKRARMRKENLARAIEHETNGNSAAAYECYQKAVDITPLIARELIQVLKRENISYVVAPYEADAQMTFLAISNQVDAVLTEDSDLIPFGCPRIIFKMDKFGQGVEFRYDLLPKNKDLSFVGFTKQMILEMCILSGCDYLQSLPGMGLKRAHALIKKFLSYDKVIRHLRYNTVSVPPLYEESFKKAILTFHHQRVYDPITEDIEQNINSGVVHERPYKIKEFNAGSVKKKLDLPVQKNVLTKYFLKVGVKYFLTPKGFASLEAKRKFRAPKQSANHQSFRDDSSSSAEEPVGPEDSCPPASTHRCENLGGCLSTYPVGNDNADGVSLSDSCRQDMVNKTEEAEHILLQQHTQLIHKPCVTLHKGPYCKNLSDTIGEKVRKENKRVIVRSSYFKHKPESNDEQENNQKVSDRNNAAVDMHETATPEVASFTSNSCDGSIKKRKASPDENTQRDNVKTKHLCQETLQPDHDEIVLETKTEGKFGSNISHLSHYSDIAEKSMERFVSVISSFRFSSGSRASGLRAPLKDVQNNNTNRLATPMDFSQFAYEPNKNRAPFRFRKGRR 937
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8072355 8083769 - Lag0025050.1 Lac10g1005 583536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g1005 937 Gene3D - 497 568 - -
Lac10g1005 937 SUPERFAMILY PIN domain-like 291 513 IPR029060 -
Lac10g1005 937 SUPERFAMILY eIF4e-like 113 288 IPR023398 -
Lac10g1005 937 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 292 889 IPR006084 GO:0017108(PANTHER)
Lac10g1005 937 MobiDBLite consensus disorder prediction 799 813 - -
Lac10g1005 937 Gene3D - 292 494 - -
Lac10g1005 937 Pfam XPG I-region 428 513 IPR006086 GO:0004518(InterPro)
Lac10g1005 937 MobiDBLite consensus disorder prediction 70 94 - -
Lac10g1005 937 MobiDBLite consensus disorder prediction 644 675 - -
Lac10g1005 937 MobiDBLite consensus disorder prediction 814 831 - -
Lac10g1005 937 ProSitePatterns Eukaryotic initiation factor 4E signature. 173 196 IPR019770 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0006413(InterPro)
Lac10g1005 937 SMART HhH_4 500 533 IPR008918 GO:0003677(InterPro)|GO:0003824(InterPro)
Lac10g1005 937 FunFam Eukaryotic translation initiation factor 4E 109 292 - -
Lac10g1005 937 MobiDBLite consensus disorder prediction 797 831 - -
Lac10g1005 937 FunFam Exonuclease 1, putative 290 494 - -
Lac10g1005 937 ProSitePatterns XPG protein signature 1. 358 372 IPR019974 GO:0016788(InterPro)
Lac10g1005 937 Gene3D RNA Cap, Translation Initiation Factor Eif4e 110 291 IPR023398 -
Lac10g1005 937 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 499 579 IPR036279 -
Lac10g1005 937 SMART xpgineu 425 495 IPR006086 GO:0004518(InterPro)
Lac10g1005 937 CDD PIN_EXO1 291 489 IPR044752 GO:0046872(InterPro)
Lac10g1005 937 CDD H3TH_EXO1 501 572 IPR037315 GO:0003677(InterPro)|GO:0035312(InterPro)
Lac10g1005 937 SMART xpgn3 291 386 IPR006085 GO:0004518(InterPro)
Lac10g1005 937 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 503 518 IPR006084 -
Lac10g1005 937 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 445 465 IPR006084 -
Lac10g1005 937 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 311 325 IPR006084 -
Lac10g1005 937 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 360 379 IPR006084 -
Lac10g1005 937 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 424 441 IPR006084 -
Lac10g1005 937 FunFam exonuclease 1 496 568 - -
Lac10g1005 937 Pfam XPG N-terminal domain 291 385 IPR006085 GO:0004518(InterPro)
Lac10g1005 937 Pfam Eukaryotic initiation factor 4E 118 270 IPR001040 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0276 Lac-Chr10:2101604 Lac10g1005 Lac-Chr10:8072355 1.50E-69 dispersed
Lac10g1005 Lac-Chr10:8072355 Lac12g2125 Lac-Chr12:38404335 4.70E-60 dispersed
Lac10g1005 Lac-Chr10:8072355 Lac7g1688 Lac-Chr7:21140341 3.60E-28 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g1005 K10746 - csv:101214177 1031.94