Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac10g1005 | ATGGAAGCCATAGTTGCTGTAAGGTTCATGGAGCTTCGAGTCGCTGTTCGTGAAAGATTTGCCCGATTCGAAGGCGCCGTAGGATTTTGTGCATCGGTTAATATTTCAGGTTTGGCTGAGGGAATGAAGCAACTGATACGCTCAATCCCACAACGAAGCAGCGAAAGAAAAATGGTTGTCGAAGAGACGATCAAAGCTACATCGACGGAAGATCTTTCCAATTCCATCGCAAATCAAAACCCTAGGGGACGAGCCGGTGAGGAAGACGAGGAACTTGAGGAAGGAGAGATCGTCGGCGACGACGACCTCGACTCGTCCAATTTATCGCCGGCGATAGTGCACCAGCCTCACCCTCTGGAGCACTCTTGGACCTTCTGGTTCGATAACCCCTCTGCCAAATCCAAACAGGCCACCTGGGGTGCGTCTATCCGACCGATCTATACCTTCTCTACTGTTGAGGAGTTTTGGAGTGTTTACAACAATATTCATCATCCAAGCAAATTGGCATTGAGGGCAGATTTGTACTGCTTTAAACATAAAATTGAGCCTAAATGGGAGGATCCTGTTTGTGCGAATGGAGGGAAATGGACTGTAAACTTTTCAAGGGGAAAATCTGATAATGGCTGGCTATACACGCTACTTGCTATGATCGGAGAACAGTTTGATTGTGGTGATGAAATTTGTGGAGCGGTTGTTAATGTTAGATCTGGGCAGGATAAGATATCAATTTGGACAAAGAATGCTTCCAATGAAGCTGCACAGGCGAGCATTGGAAAACAGTGGAAAGAGTTTCTCGATTACAACGACAGCATTGGCTTTATATTCCACGACGATGCAAAGAAATTCGACAGACATGCGAAGAACCGATATTCGGGGCTGTTACCGCTGCTCAAGTCGATAATGGTGCCGATCCACATCAAGGATTTGGAGGGTTCTTCTGTGGCGATCGATACCTATTCTTGGCTCCACAAAGGCGCTTTCTCCTGCAGCAAAGAGCTCTGCAATGGCCTTCCCACCTCCAAGCACATAGATTACTGTATGCATAGAATAAATCTACTACGGCACTATGGAGTAAAACCTGTTCTTGTCTTTGATGGAGGTCTTCTTCCAATGAAGAATGAGCAAGAAATCAAGCGTGCAAGGATGAGAAAAGAAAATCTTGCACGTGCAATAGAACATGAAACGAATGGCAATTCTGCTGCTGCCTACGAGTGTTACCAGAAGGCTGTTGATATAACGCCTTTGATCGCCCGTGAACTAATTCAAGTGTTAAAGCGAGAGAATATATCGTATGTTGTGGCACCTTATGAGGCAGATGCTCAAATGACCTTCTTGGCCATCAGCAATCAGGTTGATGCTGTTCTTACTGAGGACTCTGATCTAATACCGTTTGGCTGTCCAAGGATTATCTTTAAAATGGACAAATTTGGACAAGGAGTTGAGTTTCGATATGACTTGTTACCAAAGAACAAGGACTTGAGTTTTGTTGGATTTACGAAACAGATGATTCTTGAGATGTGCATTTTGAGTGGTTGTGATTATTTACAGTCATTGCCAGGAATGGGACTTAAAAGGGCTCATGCACTTATTAAGAAATTTTTAAGTTATGACAAGGTAATTAGACACTTGAGGTATAACACAGTTTCGGTTCCTCCTCTTTATGAAGAATCATTCAAGAAAGCAATATTGACTTTTCACCATCAACGGGTTTACGACCCTATCACCGAAGATATTGAGCAGAATATCAATTCTGGAGTTGTGCATGAAAGACCTTACAAAATAAAAGAATTTAATGCTGGTAGTGTAAAGAAAAAGTTGGATCTACCTGTGCAGAAGAATGTCCTTACGAAATACTTTTTGAAAGTGGGGGTCAAGTATTTCTTAACACCAAAAGGTTTTGCTTCTCTTGAAGCCAAGAGAAAATTTAGGGCGCCAAAACAATCAGCTAATCACCAAAGCTTCAGGGATGACTCCTCAAGTAGTGCCGAGGAGCCGGTTGGTCCTGAAGATAGTTGCCCTCCAGCTTCTACTCATCGCTGTGAAAATTTAGGGGGTTGTCTATCTACTTATCCTGTAGGAAATGATAATGCAGATGGAGTTTCCCTTTCTGATTCTTGCAGACAAGATATGGTTAATAAGACGGAAGAAGCGGAGCATATTTTACTGCAGCAACACACTCAATTAATCCATAAGCCTTGTGTTACGCTGCATAAGGGACCCTATTGCAAGAATCTTTCTGATACCATTGGAGAAAAAGTGAGGAAAGAGAACAAAAGGGTCATTGTAAGGAGTTCTTACTTCAAGCATAAGCCGGAAAGCAATGATGAACAGGAGAACAACCAAAAAGTCTCTGACCGTAATAATGCAGCTGTTGATATGCATGAGACAGCCACTCCCGAGGTTGCCTCTTTTACTAGTAATTCTTGTGACGGTTCAATCAAGAAAAGGAAAGCCTCCCCAGACGAAAACACTCAAAGGGATAATGTGAAAACTAAGCATTTGTGTCAGGAAACTTTGCAACCTGATCATGATGAAATAGTTTTGGAGACAAAAACTGAAGGAAAATTTGGATCCAACATTTCTCACTTAAGTCATTACTCAGACATAGCAGAGAAATCGATGGAACGATTTGTTTCAGTAATATCGTCATTTCGATTCTCTTCGGGGTCTCGAGCCAGTGGTCTCCGAGCCCCTTTGAAAGATGTTCAGAACAACAATACCAATAGGTTGGCTACTCCAATGGACTTCAGCCAATTTGCTTATGAACCAAATAAGAACAGGGCTCCCTTCCGATTCCGAAAAGGCAGACGTTGA | 2814 | 42.79 | MEAIVAVRFMELRVAVRERFARFEGAVGFCASVNISGLAEGMKQLIRSIPQRSSERKMVVEETIKATSTEDLSNSIANQNPRGRAGEEDEELEEGEIVGDDDLDSSNLSPAIVHQPHPLEHSWTFWFDNPSAKSKQATWGASIRPIYTFSTVEEFWSVYNNIHHPSKLALRADLYCFKHKIEPKWEDPVCANGGKWTVNFSRGKSDNGWLYTLLAMIGEQFDCGDEICGAVVNVRSGQDKISIWTKNASNEAAQASIGKQWKEFLDYNDSIGFIFHDDAKKFDRHAKNRYSGLLPLLKSIMVPIHIKDLEGSSVAIDTYSWLHKGAFSCSKELCNGLPTSKHIDYCMHRINLLRHYGVKPVLVFDGGLLPMKNEQEIKRARMRKENLARAIEHETNGNSAAAYECYQKAVDITPLIARELIQVLKRENISYVVAPYEADAQMTFLAISNQVDAVLTEDSDLIPFGCPRIIFKMDKFGQGVEFRYDLLPKNKDLSFVGFTKQMILEMCILSGCDYLQSLPGMGLKRAHALIKKFLSYDKVIRHLRYNTVSVPPLYEESFKKAILTFHHQRVYDPITEDIEQNINSGVVHERPYKIKEFNAGSVKKKLDLPVQKNVLTKYFLKVGVKYFLTPKGFASLEAKRKFRAPKQSANHQSFRDDSSSSAEEPVGPEDSCPPASTHRCENLGGCLSTYPVGNDNADGVSLSDSCRQDMVNKTEEAEHILLQQHTQLIHKPCVTLHKGPYCKNLSDTIGEKVRKENKRVIVRSSYFKHKPESNDEQENNQKVSDRNNAAVDMHETATPEVASFTSNSCDGSIKKRKASPDENTQRDNVKTKHLCQETLQPDHDEIVLETKTEGKFGSNISHLSHYSDIAEKSMERFVSVISSFRFSSGSRASGLRAPLKDVQNNNTNRLATPMDFSQFAYEPNKNRAPFRFRKGRR | 937 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 8072355 | 8083769 | - | Lag0025050.1 | Lac10g1005 | 583536 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac10g1005 | 937 | Gene3D | - | 497 | 568 | - | - | |
Lac10g1005 | 937 | SUPERFAMILY | PIN domain-like | 291 | 513 | IPR029060 | - | |
Lac10g1005 | 937 | SUPERFAMILY | eIF4e-like | 113 | 288 | IPR023398 | - | |
Lac10g1005 | 937 | PANTHER | FLAP ENDONUCLEASE FAMILY MEMBER | 292 | 889 | IPR006084 | GO:0017108(PANTHER) | |
Lac10g1005 | 937 | MobiDBLite | consensus disorder prediction | 799 | 813 | - | - | |
Lac10g1005 | 937 | Gene3D | - | 292 | 494 | - | - | |
Lac10g1005 | 937 | Pfam | XPG I-region | 428 | 513 | IPR006086 | GO:0004518(InterPro) | |
Lac10g1005 | 937 | MobiDBLite | consensus disorder prediction | 70 | 94 | - | - | |
Lac10g1005 | 937 | MobiDBLite | consensus disorder prediction | 644 | 675 | - | - | |
Lac10g1005 | 937 | MobiDBLite | consensus disorder prediction | 814 | 831 | - | - | |
Lac10g1005 | 937 | ProSitePatterns | Eukaryotic initiation factor 4E signature. | 173 | 196 | IPR019770 | GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0006413(InterPro) | |
Lac10g1005 | 937 | SMART | HhH_4 | 500 | 533 | IPR008918 | GO:0003677(InterPro)|GO:0003824(InterPro) | |
Lac10g1005 | 937 | FunFam | Eukaryotic translation initiation factor 4E | 109 | 292 | - | - | |
Lac10g1005 | 937 | MobiDBLite | consensus disorder prediction | 797 | 831 | - | - | |
Lac10g1005 | 937 | FunFam | Exonuclease 1, putative | 290 | 494 | - | - | |
Lac10g1005 | 937 | ProSitePatterns | XPG protein signature 1. | 358 | 372 | IPR019974 | GO:0016788(InterPro) | |
Lac10g1005 | 937 | Gene3D | RNA Cap, Translation Initiation Factor Eif4e | 110 | 291 | IPR023398 | - | |
Lac10g1005 | 937 | SUPERFAMILY | 5' to 3' exonuclease, C-terminal subdomain | 499 | 579 | IPR036279 | - | |
Lac10g1005 | 937 | SMART | xpgineu | 425 | 495 | IPR006086 | GO:0004518(InterPro) | |
Lac10g1005 | 937 | CDD | PIN_EXO1 | 291 | 489 | IPR044752 | GO:0046872(InterPro) | |
Lac10g1005 | 937 | CDD | H3TH_EXO1 | 501 | 572 | IPR037315 | GO:0003677(InterPro)|GO:0035312(InterPro) | |
Lac10g1005 | 937 | SMART | xpgn3 | 291 | 386 | IPR006085 | GO:0004518(InterPro) | |
Lac10g1005 | 937 | PRINTS | Xeroderma pigmentosum group G/yeast RAD superfamily signature | 503 | 518 | IPR006084 | - | |
Lac10g1005 | 937 | PRINTS | Xeroderma pigmentosum group G/yeast RAD superfamily signature | 445 | 465 | IPR006084 | - | |
Lac10g1005 | 937 | PRINTS | Xeroderma pigmentosum group G/yeast RAD superfamily signature | 311 | 325 | IPR006084 | - | |
Lac10g1005 | 937 | PRINTS | Xeroderma pigmentosum group G/yeast RAD superfamily signature | 360 | 379 | IPR006084 | - | |
Lac10g1005 | 937 | PRINTS | Xeroderma pigmentosum group G/yeast RAD superfamily signature | 424 | 441 | IPR006084 | - | |
Lac10g1005 | 937 | FunFam | exonuclease 1 | 496 | 568 | - | - | |
Lac10g1005 | 937 | Pfam | XPG N-terminal domain | 291 | 385 | IPR006085 | GO:0004518(InterPro) | |
Lac10g1005 | 937 | Pfam | Eukaryotic initiation factor 4E | 118 | 270 | IPR001040 | GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac10g0276 | Lac-Chr10:2101604 | Lac10g1005 | Lac-Chr10:8072355 | 1.50E-69 | dispersed | |
Lac10g1005 | Lac-Chr10:8072355 | Lac12g2125 | Lac-Chr12:38404335 | 4.70E-60 | dispersed | |
Lac10g1005 | Lac-Chr10:8072355 | Lac7g1688 | Lac-Chr7:21140341 | 3.60E-28 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac10g1005 | K10746 | - | csv:101214177 | 1031.94 |