Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g1014 ATGGACAAGAATCGGAGCGGAGAAAGAGGGGCGACGGCGTTTTCGTCCTCCGCTGATAGCAATATGAGGGCTCGTCCGAGCAACACCACCAGCACCGACAACAGAGTTGCGGCACTCGTGCAATACAATGCCGATGCTGGGCTTTTGAACAAGTTTGAGCAATCGGACGCCTCTGGTGAGTCTTTTAACTATTCGAGGTCCGTTCTTGAAGCTCCTCAATCTGTTCCCGAAGAACAAATTACTGCTTATCTGTCTAGGATTCAGAGGGGTGGGCTGGTTCAGCCGTTTGGTTGTTTGCTTGCGATTGAAGAATCTAGTTTTAAGATTATTAGCTATAGTGAGAATTGTTTTGAGTTATTGGGGCTAAATGATCAGTTTGAGTTGGCACAGGGGAAGGGTCTGATTGGGGTTGATATGAGAGCTCTGTTTACGCCTTCCTCTGGCGCTTCTTTGGCAAAAGCGGCTTCGTCCAGGGAGATTTCGCTTCTGAATCCTGTTTGGGTCTATTCTAGGACTACTCAGAAGCCATTTTATGCCATATTACATAGAATTGATGTGGGGATTGTGATTGATTTGGAGCCTGCACGGTCTGTTGATCCTGCATTGTCACTGGCTGGCGCCGTGCAGTCGCAGAAACTTGCAGTTCGGGCGATTTCCAGGTTGCAGTCTCTACCTGGTGGTGATATTGGTGTTTTATGTGATACGGTTGTGGAGGATGTTCAGAAGCTGACAGGGTATGATAGAGTGATGGTGTATAAGTTCCATGATGATGAACATGGTGAAGTAGTGTCAGAAATCAGAAGGTCAGACTTAGAGCCATACCTAGGTTTGCATTATCCTGCCATTGATATACCTCAAGCAGCTCGTTTTTTGTTCAAGCAGAACCGCGTCAGGATGATTTGCGATTGCCACGCGAAGCCCGTGCGGGTCATTCAAAGTGATGAGCTAAAGCAGCCTCTTTGTTTGGTAAATTCAACACTTCGATCACCACATAGCTGTCATTTACAGTACATGGCAAATATGGGTTCCTTAGCCTCATTAGCGATGGCAGTAATCATGAACAGTGATGACTCGCCAACAAGGTTATGGGGCCTGGTGGTGTGCCACCATACTTCTCCACGCTATGTCCCTTTCCCACTTCGTTATGCTTGCGAGTTCCTCATGCAGGCATTTGGACTGCAGCTTTACATGGAGCTTCAATTGGCAGTACAATTAACAGAGAAAAAGGTTCTCAAGACACAAACTTTACTCTGTGATATGCTCCTCCGAGGCTCACCATATGCATTGCTGACTCAGTCTCCTAGTATAATGGATCTCGTGAAGTGTGATGGTGCTGCATTGTACTATAACGGGGCATGTTGCTTACTAGGTGTAACTCCAACTGAAGCACAAGTCAAAGATCTTGCAGAGTGGGTACTCAATAACCATGGGGATTCTACGGGACTAAGCACAGATAGTTTGGCTGATGCTGGCTACCCTGAAGCTGCTTCACTAGGTGATGCAGTGTGTGGTGTGGCAGCTGCAAGAATTAGTTCGAAGGATTTCTTATTCTGGTTCAGGTCCCATGCTGCAAAGGAAATCCAATGGGGAGGAGCCAAGCATCATCCAGATGATAAGGATGATGGTGGAAGAATGCACCCGAGATCATCATTTAAAGCATTTCTTGAAGTTGCAAAGAGTAGAAGTATGTCTTGGGAAGTTCATGAAATAAATGCCATTCATTCATTGCAGCTCATTATGAGGGAGTCTTTTTCGAACACTAGGGACAGTGATTCAAAGGCAGAAATTTCTGTCCAGCAGAGTCATTCTGAGGTCCAGGATATTGACGAACTCAGTTCAGTAGCTTGCGAAATGGTTAGGTTGATTGAAACAGCAACCATTCCAATTTTTGGGGTTGACTTAACTGGTGTGATCAATGGATGGAATGCTAAGATTTCTGAACTCGTAGGATTACCAACTAGTGAAGCTTTGGGGAGATCTCTGGTTAATGAAATTGTTCATGAAGATTCACGTGGAGCTGTTGAGGATTTACTTTTCCATGCTCTGCAAGGTAAGGAAGACAAAAATGTGGAGTTAAAACTGAGAAGTTTTGGAAGGGATGAAGAAAACTCTACCGTTTATATTGTAGCTAATGCTTGCACAAGTAGGGATTACACAAATAAAGTTGTCGGGGTTTGCTTTGTTGGGCAAGATGTTACATCTGAGAAAGGTGTGATGGATAAATTTATCCGTCTACAAGGAGATTATAAGACTATTATTGAAAGTCTAAATCCATTGATTCCACCAATATTTGTTTCGGACGAGAATGGTTATTGTTGTGAATGGACTGCAGCCATGGAAAAAATTTCTGGTTGGAGGAAAGATGAAGTTATAGGAAAAATGCTAGCTGGGGAGATCTTTGGGAATTTCTGTAGGTTGAAAGGTCTAGATACCCTTACGAGGTTTATGATTCTATTATATCAAGGTGTTGGTGGTGAAGAAACTGAGAAGTTTCCATTAGGATTTTTTGATAAGGATGGGAACTATGTGGAGGTACTTTTAACATCGAACAAGAGGACTGATGCAGAAGGAAATGTCATTGGTTGTATCTGCTTCCTGCAAATTGTTGAGCCCAACTTGCTAGGGGTCTCTGAAGAACATGGGCTGGGCGACAGAGAGGCTAATTTGCAGCTTAAGGAGTTGACTTACATAAAGCAGGAGATGAAAAATCCTTTAAATGGCATCAGATTTACTCATGAACTCCTCGTAAATTCTGGCATTACCGAAAACCAGAAACTCTTCCTCGATACAAGTGATGCGTGCGAGAGGCAAATTACGACAATCGTAGAGGATATGGACTTCAGAAGTTTAGAAGGAGGCCACGTAGAGATAAACAGAGAAGAGTTCGTCCTCGGGAGTGTTCTGGACGCCATCATCTGTCAAATCATGACTGTTGTCAGAGAGAAGAACATACAACTTTTTCATGAAATTCCAGAAGAAATCAAGATGTTAACTCTTTGTGGCGATCAAATTAAGCTTCAGCTGGTTTTGTCAGATTTCTTACTTAACGTAGTGCAGCATGCTCCTGTTCTGGACGGTTGGGTTGAAATCAAAATTTCAGCTGGTTTGAAGCTTATACAAGATGGAAATGAACATATTCACTTGCAGATCAGAATGTCACATCCAGGTCAGGGTCTGCCTCCTGAACTCATCCAAGATATGGTCGGAGGAGGACAACAGTGGACTTCACAGCAAGGCCTCACCCTAAACCTGTCACGTAGACTTCTCAATAAATTGAACGGTAACATTCGCTATGTTAGAGAGCAAACTAAATGCTACTTCCTCATCGATCTCGAACTCAAGTTAAGGCGCTCGAGGGGTCTGGATTTACAGGTTGTGTGTAGCTGTGTCTGTATTTGTGGTGATGCTGCTGCTGGTGCATGTTTCAGCAATGTGGCAATATTCACTGAATTCAGTGAATATGCGTTTGGTAGACGTGTTTCTGAAAACTGTTTTCGGATTCTGTGA 3507 43.71 MDKNRSGERGATAFSSSADSNMRARPSNTTSTDNRVAALVQYNADAGLLNKFEQSDASGESFNYSRSVLEAPQSVPEEQITAYLSRIQRGGLVQPFGCLLAIEESSFKIISYSENCFELLGLNDQFELAQGKGLIGVDMRALFTPSSGASLAKAASSREISLLNPVWVYSRTTQKPFYAILHRIDVGIVIDLEPARSVDPALSLAGAVQSQKLAVRAISRLQSLPGGDIGVLCDTVVEDVQKLTGYDRVMVYKFHDDEHGEVVSEIRRSDLEPYLGLHYPAIDIPQAARFLFKQNRVRMICDCHAKPVRVIQSDELKQPLCLVNSTLRSPHSCHLQYMANMGSLASLAMAVIMNSDDSPTRLWGLVVCHHTSPRYVPFPLRYACEFLMQAFGLQLYMELQLAVQLTEKKVLKTQTLLCDMLLRGSPYALLTQSPSIMDLVKCDGAALYYNGACCLLGVTPTEAQVKDLAEWVLNNHGDSTGLSTDSLADAGYPEAASLGDAVCGVAAARISSKDFLFWFRSHAAKEIQWGGAKHHPDDKDDGGRMHPRSSFKAFLEVAKSRSMSWEVHEINAIHSLQLIMRESFSNTRDSDSKAEISVQQSHSEVQDIDELSSVACEMVRLIETATIPIFGVDLTGVINGWNAKISELVGLPTSEALGRSLVNEIVHEDSRGAVEDLLFHALQGKEDKNVELKLRSFGRDEENSTVYIVANACTSRDYTNKVVGVCFVGQDVTSEKGVMDKFIRLQGDYKTIIESLNPLIPPIFVSDENGYCCEWTAAMEKISGWRKDEVIGKMLAGEIFGNFCRLKGLDTLTRFMILLYQGVGGEETEKFPLGFFDKDGNYVEVLLTSNKRTDAEGNVIGCICFLQIVEPNLLGVSEEHGLGDREANLQLKELTYIKQEMKNPLNGIRFTHELLVNSGITENQKLFLDTSDACERQITTIVEDMDFRSLEGGHVEINREEFVLGSVLDAIICQIMTVVREKNIQLFHEIPEEIKMLTLCGDQIKLQLVLSDFLLNVVQHAPVLDGWVEIKISAGLKLIQDGNEHIHLQIRMSHPGQGLPPELIQDMVGGGQQWTSQQGLTLNLSRRLLNKLNGNIRYVREQTKCYFLIDLELKLRRSRGLDLQVVCSCVCICGDAAAGACFSNVAIFTEFSEYAFGRRVSENCFRIL 1168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8170386 8176346 - Lag0025059.1 Lac10g1014 583545

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g1014 1168 Gene3D - 404 577 IPR043150 -
Lac10g1014 1168 NCBIfam PAS domain S-box protein 761 866 IPR000014 -
Lac10g1014 1168 NCBIfam PAS domain S-box protein 621 736 IPR000014 -
Lac10g1014 1168 SUPERFAMILY GAF domain-like 208 395 - -
Lac10g1014 1168 FunFam Phytochrome 404 533 - -
Lac10g1014 1168 PANTHER OS08G0260000 PROTEIN 23 993 - -
Lac10g1014 1168 ProSiteProfiles Histidine kinase domain profile. 896 1115 IPR005467 -
Lac10g1014 1168 PIRSF Phytochrome_conventional 14 1121 IPR012129 GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro)
Lac10g1014 1168 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 228 389 IPR016132 -
Lac10g1014 1168 Gene3D - 930 1107 IPR036890 -
Lac10g1014 1168 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 954 1111 IPR036890 -
Lac10g1014 1168 SUPERFAMILY GAF domain-like 407 584 - -
Lac10g1014 1168 SUPERFAMILY PYP-like sensor domain (PAS domain) 620 728 IPR035965 -
Lac10g1014 1168 CDD HisKA 894 949 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lac10g1014 1168 SUPERFAMILY PYP-like sensor domain (PAS domain) 87 196 IPR035965 -
Lac10g1014 1168 SUPERFAMILY PYP-like sensor domain (PAS domain) 762 864 IPR035965 -
Lac10g1014 1168 SMART gaf_1 228 409 IPR003018 GO:0005515(InterPro)
Lac10g1014 1168 ProSiteProfiles PAC domain profile. 688 744 IPR000700 -
Lac10g1014 1168 SMART pas_2 616 683 IPR000014 -
Lac10g1014 1168 SMART pas_2 747 817 IPR000014 -
Lac10g1014 1168 MobiDBLite consensus disorder prediction 1 35 - -
Lac10g1014 1168 ProSitePatterns Phytochrome chromophore attachment site signature. 328 337 IPR013516 -
Lac10g1014 1168 PRINTS Phytochrome signature 429 449 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac10g1014 1168 PRINTS Phytochrome signature 514 533 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac10g1014 1168 PRINTS Phytochrome signature 328 349 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac10g1014 1168 PRINTS Phytochrome signature 617 633 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac10g1014 1168 PRINTS Phytochrome signature 243 262 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac10g1014 1168 PRINTS Phytochrome signature 143 165 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac10g1014 1168 PRINTS Phytochrome signature 710 727 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac10g1014 1168 PRINTS Phytochrome signature 547 565 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac10g1014 1168 PRINTS Phytochrome signature 636 651 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac10g1014 1168 PRINTS Phytochrome signature 730 750 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac10g1014 1168 Gene3D PAS domain 615 736 - -
Lac10g1014 1168 Pfam PAS fold 617 732 IPR013767 GO:0006355(InterPro)
Lac10g1014 1168 Pfam PAS fold 748 867 IPR013767 GO:0006355(InterPro)
Lac10g1014 1168 ProSiteProfiles PAS repeat profile. 748 800 IPR000014 -
Lac10g1014 1168 FunFam Phytochrome 610 742 - -
Lac10g1014 1168 FunFam Phytochrome 761 869 - -
Lac10g1014 1168 Pfam Phytochrome region 412 587 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Lac10g1014 1168 CDD PAS 625 732 IPR000014 -
Lac10g1014 1168 SMART HisKA_10 889 953 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lac10g1014 1168 SMART HKATPase_4 1001 1113 IPR003594 -
Lac10g1014 1168 CDD HATPase_Phy-like 1001 1113 IPR044767 -
Lac10g1014 1168 MobiDBLite consensus disorder prediction 9 35 - -
Lac10g1014 1168 Pfam His Kinase A (phospho-acceptor) domain 892 952 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lac10g1014 1168 Pfam GAF domain 229 396 IPR003018 GO:0005515(InterPro)
Lac10g1014 1168 CDD PAS 759 867 IPR000014 -
Lac10g1014 1168 ProSiteProfiles PAS repeat profile. 614 685 IPR000014 -
Lac10g1014 1168 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1001 1109 IPR003594 -
Lac10g1014 1168 Gene3D - 209 560 IPR029016 -
Lac10g1014 1168 Gene3D PAS domain 86 331 - -
Lac10g1014 1168 Pfam PAS fold 82 195 IPR013654 GO:0006355(InterPro)
Lac10g1014 1168 Gene3D PAS domain 761 872 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g1014 K12123 - - csv:101214900 1985.69
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g1014 Lac-Chr10:8170386 Lac12g0396 Lac-Chr12:4469365 3.40E-302 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g343 . . . . . . Bma14g00963 Bma01g01487 . Cmo18g00427 . . . . . Cpe09g00775 . . . . . . . . . . . . . . . . . . . . . Chy12g00013 . . . . . Bpe02g00962 . . . Sed01g2202 . . Cma13g00567 Cma18g00452 Car13g00449 Car18g00423 . Cpe20g00493 Bhi08g02111 Tan05g2567 Cmetu12g0178 Lac10g1014 Hepe07g1806 . . Cla03g00672 Cam03g0721 Cec03g0697 Cco03g0733 Clacu03g0719 Cmu03g1310 Cre03g1005 Lsi02g00857 Csa01g02269 . Cme12g01234
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac5g0101 . 30 1213 Histidine Kinase Gene Family AT2G17820 65.1 0.0e+00 1446.8
Lac13g1678 . 28 1013 Histidine Kinase Gene Family AT2G01830 71.7 0.0e+00 1348.2
Lac8g2211 . 23 959 Histidine Kinase Gene Family AT2G01830 72.2 0.0e+00 1322.4
Lac4g1833 . 79 1023 Histidine Kinase Gene Family AT2G01830 53.6 3.7e-279 958.7
Lac12g0372 . 1068 2020 Histidine Kinase Gene Family AT2G01830 53.5 1.3e-276 950.3
Lac9g1967 . 283 1238 Histidine Kinase Gene Family AT2G01830 52.4 7.7e-269 924.5
Lac2g0516 . 1 984 Histidine Kinase Gene Family AT5G10720 57.9 5.5e-287 984.6
Lac6g0061 . 129 1248 Histidine Kinase Gene Family AT1G09570 80.7 0.0e+00 1842.8
Lac6g0064 . 1 1130 Histidine Kinase Gene Family AT1G09570 73.9 0.0e+00 1691.8
Lac12g0396 . 18 1110 Histidine Kinase Gene Family AT1G09570 55.6 0.0e+00 1230.3
Lac7g0960 . 27 666 Histidine Kinase Gene Family AT1G09570 60.4 1.7e-229 793.9
Lac10g1014 . 31 1051 Histidine Kinase Gene Family AT2G18790 61.2 0.0e+00 1258.4
Lac6g0061 . 149 1182 Histidine Kinase Gene Family AT2G18790 53.7 0.0e+00 1094.7
Lac7g0960 . 13 666 Histidine Kinase Gene Family AT2G18790 84.2 0.0e+00 1094.0
Lac12g0396 . 26 1067 Histidine Kinase Gene Family AT2G18790 52.6 7.9e-314 1073.9
Lac6g0064 . 7 1065 Histidine Kinase Gene Family AT2G18790 51.5 1.7e-311 1066.2
Lac7g0961 . 45 414 Histidine Kinase Gene Family AT2G18790 70.0 3.2e-156 550.4
Lac12g0396 . 12 1114 Histidine Kinase Gene Family AT5G35840 62.2 0.0e+00 1382.9
Lac6g0061 . 137 1242 Histidine Kinase Gene Family AT5G35840 51.8 0.0e+00 1119.0
Lac7g0960 . 21 668 Histidine Kinase Gene Family AT5G35840 58.7 9.3e-225 778.1
Lac10g1014 . 32 1113 Histidine Kinase Gene Family AT4G16250 59.0 0.0e+00 1300.0
Lac6g0061 . 136 1243 Histidine Kinase Gene Family AT4G16250 52.8 0.0e+00 1140.6
Lac12g0396 . 26 1113 Histidine Kinase Gene Family AT4G16250 52.6 0.0e+00 1115.5
Lac6g0064 . 8 1126 Histidine Kinase Gene Family AT4G16250 50.7 0.0e+00 1089.7
Lac7g0960 . 3 666 Histidine Kinase Gene Family AT4G16250 79.6 7.1e-308 1054.3
Lac7g0961 . 45 475 Histidine Kinase Gene Family AT4G16250 71.0 6.0e-182 636.0
Lac10g1014 . 15 1113 Histidine Kinase Gene Family AT4G18130 64.0 0.0e+00 1404.0
Lac7g0960 . 3 666 Histidine Kinase Gene Family AT4G18130 63.2 1.5e-235 813.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009148 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 1 1 0 2 1 1 1 1 1 1 1 1 2 1 1 34