Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g1027 ATGCCATGTTGTTCTTCCTGTACTACGAAGCACTTCTTCAAGCGCTTTTTCACCGACGAGTTCCAAATGAATGGCGCTCTTCAAAGCACTTTCTTGTCTCCTGAACTCTTGCCTTCCCTTGGCGCCAGTATCAACCACACCACCAAGCTTCGTAAACACATCATTTCCCCTTTCAACCCTCGTTATCGAGCATGGGAGATGTGGCTGGTGGTTCTAGTGATTTACTCAGCTTGGATTTGTCCATTCGAATTTGCATTTCTTCCTTACAAGCAAAATGCTCTTTTCATCATCGACCACGTCGTCAATGCCTTCTTCGCCGTCGATATCGTTTTAACTTTCTTCGTCGCATATCTAGATACCCAATCCTATCTTCTCGTCGACGACCCCAAAAAAATTGCAATCAGGTATTTATCTACGTGGTTTATTTTGGACGTTTGTTCCACTGCGCCATTACAGTCGATCAGTTTTTTATTTACGAATCGAAGTGGGGAAGTTGGGTTTAAGCTTCTGAATATGCTCCGGCTATGGCGGCTCCGACGGGTCAGCTCTCTCTTTGCAAGGCTGGAAAAGGACATCAGGTTCAATTATTTCTGGACCCGTTGCACAAAGCTCATTTCTGTTACATTATTTGCAGTACACTGTGCTGGGTGCTTTAATTTCGTAATAGCAGATAAATATCCGGACCCAAAAGGAACGTGGATTGGTGCAGTGAACCCAAATTTCAAAGAAGATAGTGTGTGGAATCTTTATGTGACTGCAATTTACTGGTCCATTACAACCTTAACCACCACTGGCTATGGCGATCTCCATGCTGAGAACCCTAGAGAAATGCTCTTTGATATCTTTTACATGCTCTTCAACTTGGGCTTGACTTCTTATCTCATTGGCAACATGACCAATCTCGTCGTCCATTGGACAAGTCGCACCCGAAACTTCAGAGATTCTGTACGAGCTGCGACGGAGTTTGCGTCGAGAAACCAGTTACCAGATCGGATACAAGACCAAATGTTGTCGCACATATGTCTGAAGTTCAGAACGGAGGGGCTGAAGCAACAAGACACATTGAACGACCTTCCAAAAGCCATTAGAGCCTCCATAGCTCATTATCTATTCTATCCTATTGTTCAGAAAGCCTACCTTTTTGAAGGAGTTTCTCATGACTTTCTTTTCCAATTGGTCTCAGATGTGGAGGCTGAGTACTTCCCACCCAAAGAAGATATTATACTCCAAAATGAGGCTCAAACAGATCTCTATATATTGGTCTCAGGCAGTGTGGATCTAATATCCAATATTGATGGCCATGATCAAGTTATTGGAAGAGCAACAGCTGGAGAAATGTTTGGAGAATTTGGAGTGTTATGTCAAAAACCACAACCTTTCACTGTTCAAACCACAAAGCTTTCTCAAATATTGAGGCTCAAGAGAACTTCTTTATTGTATATTATTCAATCAAATACAGAGGATGGGAATATTATTATGAACAACTTTTTCATGAAAATGAAGGAATATGAAAAAATGGGCAATATTTGGAGAGATGGTGGGCTAAAGAAACTTGAAAATCATTCCAAAGATGAATATGTGGAAAGTTTAGATGAACATCGAATTGAGTTCGATGAGCTTGAAGGAGCTGAAAAGGATATTATTTTTTCTCATAACAAACAAGGAAATTTTCCAACGAGCTCTTGCTCGAACATCTCGAGGCAAATCAAGAAGAGGGTTACTGTATATATACAGCCTCGAGAACGAAGCAAGGTTAAAAGCCAATGCGCGAAGTTAATGCTTCTCCCTAGTTCGTTAGAAGAGCTCTGCAAAATCGCAGGTGAAAAGTTTGGAGGGGAAATGCCTACAAAAGTGATGAGTGCAGATAATGCAGAAATTGATGATATAAGTGTGATTCGTGATGGTGACCATTTGTTTCTTCTTTATAATGATAATATCCAAAAATGTGGTCTCCAATGA 1959 41.14 MPCCSSCTTKHFFKRFFTDEFQMNGALQSTFLSPELLPSLGASINHTTKLRKHIISPFNPRYRAWEMWLVVLVIYSAWICPFEFAFLPYKQNALFIIDHVVNAFFAVDIVLTFFVAYLDTQSYLLVDDPKKIAIRYLSTWFILDVCSTAPLQSISFLFTNRSGEVGFKLLNMLRLWRLRRVSSLFARLEKDIRFNYFWTRCTKLISVTLFAVHCAGCFNFVIADKYPDPKGTWIGAVNPNFKEDSVWNLYVTAIYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGLTSYLIGNMTNLVVHWTSRTRNFRDSVRAATEFASRNQLPDRIQDQMLSHICLKFRTEGLKQQDTLNDLPKAIRASIAHYLFYPIVQKAYLFEGVSHDFLFQLVSDVEAEYFPPKEDIILQNEAQTDLYILVSGSVDLISNIDGHDQVIGRATAGEMFGEFGVLCQKPQPFTVQTTKLSQILRLKRTSLLYIIQSNTEDGNIIMNNFFMKMKEYEKMGNIWRDGGLKKLENHSKDEYVESLDEHRIEFDELEGAEKDIIFSHNKQGNFPTSSCSNISRQIKKRVTVYIQPRERSKVKSQCAKLMLLPSSLEELCKIAGEKFGGEMPTKVMSADNAEIDDISVIRDGDHLFLLYNDNIQKCGLQ 652
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 8313170 8319952 + Lag0025072.1 Lac10g1027 583558
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac10g1027 652 Gene3D Helix hairpin bin 304 370 - -
Lac10g1027 652 ProSiteProfiles KHA domain profile. 572 652 IPR021789 -
Lac10g1027 652 SUPERFAMILY Voltage-gated potassium channels 57 303 - -
Lac10g1027 652 SUPERFAMILY cAMP-binding domain-like 307 496 IPR018490 -
Lac10g1027 652 FunFam Potassium channel KAT2 368 504 - -
Lac10g1027 652 CDD CAP_ED 380 493 IPR000595 -
Lac10g1027 652 PANTHER POTASSIUM CHANNEL AKT1 20 509 IPR045319 GO:0005249(InterPro)|GO:0006813(InterPro)
Lac10g1027 652 PRINTS EAG/ELK/ERG potassium channel family signature 276 287 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Lac10g1027 652 PRINTS EAG/ELK/ERG potassium channel family signature 109 118 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Lac10g1027 652 PRINTS EAG/ELK/ERG potassium channel family signature 294 303 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Lac10g1027 652 PRINTS EAG/ELK/ERG potassium channel family signature 250 267 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Lac10g1027 652 PRINTS EAG/ELK/ERG potassium channel family signature 98 108 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Lac10g1027 652 PRINTS EAG/ELK/ERG potassium channel family signature 75 82 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Lac10g1027 652 Gene3D Jelly Rolls 373 507 IPR014710 -
Lac10g1027 652 ProSiteProfiles cAMP/cGMP binding motif profile. 380 499 IPR000595 -
Lac10g1027 652 Pfam KHA, dimerisation domain of potassium ion channel 571 640 IPR021789 -
Lac10g1027 652 Gene3D - 63 303 - -
Lac10g1027 652 Pfam Cyclic nucleotide-binding domain 399 485 IPR000595 -
Lac10g1027 652 Coils Coil 523 543 - -
Lac10g1027 652 SMART cnmp_10 380 497 IPR000595 -
Lac10g1027 652 Pfam Ion transport protein 62 309 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac10g1027 652 FunFam Potassium channel KAT3 64 304 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g1027 Lac-Chr10:8313170 Lac3g0844 Lac-Chr3:6773853 1.50E-177 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g1027 K21867 - csv:101215858 1089.72