Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac10g1027 | ATGCCATGTTGTTCTTCCTGTACTACGAAGCACTTCTTCAAGCGCTTTTTCACCGACGAGTTCCAAATGAATGGCGCTCTTCAAAGCACTTTCTTGTCTCCTGAACTCTTGCCTTCCCTTGGCGCCAGTATCAACCACACCACCAAGCTTCGTAAACACATCATTTCCCCTTTCAACCCTCGTTATCGAGCATGGGAGATGTGGCTGGTGGTTCTAGTGATTTACTCAGCTTGGATTTGTCCATTCGAATTTGCATTTCTTCCTTACAAGCAAAATGCTCTTTTCATCATCGACCACGTCGTCAATGCCTTCTTCGCCGTCGATATCGTTTTAACTTTCTTCGTCGCATATCTAGATACCCAATCCTATCTTCTCGTCGACGACCCCAAAAAAATTGCAATCAGGTATTTATCTACGTGGTTTATTTTGGACGTTTGTTCCACTGCGCCATTACAGTCGATCAGTTTTTTATTTACGAATCGAAGTGGGGAAGTTGGGTTTAAGCTTCTGAATATGCTCCGGCTATGGCGGCTCCGACGGGTCAGCTCTCTCTTTGCAAGGCTGGAAAAGGACATCAGGTTCAATTATTTCTGGACCCGTTGCACAAAGCTCATTTCTGTTACATTATTTGCAGTACACTGTGCTGGGTGCTTTAATTTCGTAATAGCAGATAAATATCCGGACCCAAAAGGAACGTGGATTGGTGCAGTGAACCCAAATTTCAAAGAAGATAGTGTGTGGAATCTTTATGTGACTGCAATTTACTGGTCCATTACAACCTTAACCACCACTGGCTATGGCGATCTCCATGCTGAGAACCCTAGAGAAATGCTCTTTGATATCTTTTACATGCTCTTCAACTTGGGCTTGACTTCTTATCTCATTGGCAACATGACCAATCTCGTCGTCCATTGGACAAGTCGCACCCGAAACTTCAGAGATTCTGTACGAGCTGCGACGGAGTTTGCGTCGAGAAACCAGTTACCAGATCGGATACAAGACCAAATGTTGTCGCACATATGTCTGAAGTTCAGAACGGAGGGGCTGAAGCAACAAGACACATTGAACGACCTTCCAAAAGCCATTAGAGCCTCCATAGCTCATTATCTATTCTATCCTATTGTTCAGAAAGCCTACCTTTTTGAAGGAGTTTCTCATGACTTTCTTTTCCAATTGGTCTCAGATGTGGAGGCTGAGTACTTCCCACCCAAAGAAGATATTATACTCCAAAATGAGGCTCAAACAGATCTCTATATATTGGTCTCAGGCAGTGTGGATCTAATATCCAATATTGATGGCCATGATCAAGTTATTGGAAGAGCAACAGCTGGAGAAATGTTTGGAGAATTTGGAGTGTTATGTCAAAAACCACAACCTTTCACTGTTCAAACCACAAAGCTTTCTCAAATATTGAGGCTCAAGAGAACTTCTTTATTGTATATTATTCAATCAAATACAGAGGATGGGAATATTATTATGAACAACTTTTTCATGAAAATGAAGGAATATGAAAAAATGGGCAATATTTGGAGAGATGGTGGGCTAAAGAAACTTGAAAATCATTCCAAAGATGAATATGTGGAAAGTTTAGATGAACATCGAATTGAGTTCGATGAGCTTGAAGGAGCTGAAAAGGATATTATTTTTTCTCATAACAAACAAGGAAATTTTCCAACGAGCTCTTGCTCGAACATCTCGAGGCAAATCAAGAAGAGGGTTACTGTATATATACAGCCTCGAGAACGAAGCAAGGTTAAAAGCCAATGCGCGAAGTTAATGCTTCTCCCTAGTTCGTTAGAAGAGCTCTGCAAAATCGCAGGTGAAAAGTTTGGAGGGGAAATGCCTACAAAAGTGATGAGTGCAGATAATGCAGAAATTGATGATATAAGTGTGATTCGTGATGGTGACCATTTGTTTCTTCTTTATAATGATAATATCCAAAAATGTGGTCTCCAATGA | 1959 | 41.14 | MPCCSSCTTKHFFKRFFTDEFQMNGALQSTFLSPELLPSLGASINHTTKLRKHIISPFNPRYRAWEMWLVVLVIYSAWICPFEFAFLPYKQNALFIIDHVVNAFFAVDIVLTFFVAYLDTQSYLLVDDPKKIAIRYLSTWFILDVCSTAPLQSISFLFTNRSGEVGFKLLNMLRLWRLRRVSSLFARLEKDIRFNYFWTRCTKLISVTLFAVHCAGCFNFVIADKYPDPKGTWIGAVNPNFKEDSVWNLYVTAIYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGLTSYLIGNMTNLVVHWTSRTRNFRDSVRAATEFASRNQLPDRIQDQMLSHICLKFRTEGLKQQDTLNDLPKAIRASIAHYLFYPIVQKAYLFEGVSHDFLFQLVSDVEAEYFPPKEDIILQNEAQTDLYILVSGSVDLISNIDGHDQVIGRATAGEMFGEFGVLCQKPQPFTVQTTKLSQILRLKRTSLLYIIQSNTEDGNIIMNNFFMKMKEYEKMGNIWRDGGLKKLENHSKDEYVESLDEHRIEFDELEGAEKDIIFSHNKQGNFPTSSCSNISRQIKKRVTVYIQPRERSKVKSQCAKLMLLPSSLEELCKIAGEKFGGEMPTKVMSADNAEIDDISVIRDGDHLFLLYNDNIQKCGLQ | 652 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 8313170 | 8319952 | + | Lag0025072.1 | Lac10g1027 | 583558 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac10g1027 | 652 | Gene3D | Helix hairpin bin | 304 | 370 | - | - | |
| Lac10g1027 | 652 | ProSiteProfiles | KHA domain profile. | 572 | 652 | IPR021789 | - | |
| Lac10g1027 | 652 | SUPERFAMILY | Voltage-gated potassium channels | 57 | 303 | - | - | |
| Lac10g1027 | 652 | SUPERFAMILY | cAMP-binding domain-like | 307 | 496 | IPR018490 | - | |
| Lac10g1027 | 652 | FunFam | Potassium channel KAT2 | 368 | 504 | - | - | |
| Lac10g1027 | 652 | CDD | CAP_ED | 380 | 493 | IPR000595 | - | |
| Lac10g1027 | 652 | PANTHER | POTASSIUM CHANNEL AKT1 | 20 | 509 | IPR045319 | GO:0005249(InterPro)|GO:0006813(InterPro) | |
| Lac10g1027 | 652 | PRINTS | EAG/ELK/ERG potassium channel family signature | 276 | 287 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Lac10g1027 | 652 | PRINTS | EAG/ELK/ERG potassium channel family signature | 109 | 118 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Lac10g1027 | 652 | PRINTS | EAG/ELK/ERG potassium channel family signature | 294 | 303 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Lac10g1027 | 652 | PRINTS | EAG/ELK/ERG potassium channel family signature | 250 | 267 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Lac10g1027 | 652 | PRINTS | EAG/ELK/ERG potassium channel family signature | 98 | 108 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Lac10g1027 | 652 | PRINTS | EAG/ELK/ERG potassium channel family signature | 75 | 82 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Lac10g1027 | 652 | Gene3D | Jelly Rolls | 373 | 507 | IPR014710 | - | |
| Lac10g1027 | 652 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 380 | 499 | IPR000595 | - | |
| Lac10g1027 | 652 | Pfam | KHA, dimerisation domain of potassium ion channel | 571 | 640 | IPR021789 | - | |
| Lac10g1027 | 652 | Gene3D | - | 63 | 303 | - | - | |
| Lac10g1027 | 652 | Pfam | Cyclic nucleotide-binding domain | 399 | 485 | IPR000595 | - | |
| Lac10g1027 | 652 | Coils | Coil | 523 | 543 | - | - | |
| Lac10g1027 | 652 | SMART | cnmp_10 | 380 | 497 | IPR000595 | - | |
| Lac10g1027 | 652 | Pfam | Ion transport protein | 62 | 309 | IPR005821 | GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lac10g1027 | 652 | FunFam | Potassium channel KAT3 | 64 | 304 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac10g1027 | Lac-Chr10:8313170 | Lac3g0844 | Lac-Chr3:6773853 | 1.50E-177 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac10g1027 | K21867 | - | csv:101215858 | 1089.72 |