Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g1066 ATGGCGGCCTCAACAATGGCTCTCTCCTCTCCGTCACTCGCCGGAAAGGCCGTGAAACTCACGCCCTCCTCCCCCGAGCTGCTCGGCAACGGCAGAGTCAGCATGAGGAAATCCGCCTCCAAGCCCGTTTCTTCTGGAAGCCCCTGGTACGGACCCGACCGTGTCAAGTACTTGGGCCCATTCTCCGGCGAGCCTCCCTCCTACCTCACCGGAGAGTTCCCCGGCGACTACGGCTGGGACACCGCCGGACTGTCCGCAGACCCCGAGACCTTCGCCAAGAATCGTGAGCTGGAAGTGATCCACTCGAGGTGGGCCATGCTGGGAGCCCTTGGGTGCGTCTTCCCGGAGCTTCTGTCCCGCAACGGCGTGAAGTTCGGAGAAGCGGTGTGGTTCAAGGCCGGTTCACAGATCTTCAGCGAAGGTGGGCTCGACTACTTGGGGAACCCGAGCTTGATCCACGCCCAGAGCATTCTCGCCATCTGGGCCTCACAGGTGGTTCTCATGGGGGCCGTCGAGGGTTACCGCATCGCCGGAGGCCCACTCGGAGAGATAACCGACCCGATTTACCCGGGTGGGAGCTTCGACCCGTTGGGGCTTGCAGATGACCCGGAAGCTTTTGCGGAGCTGAAGGTGAAGGAGCTGAAGAATGGGAGGTTGGCCATGTTCTCCATGTTTGGATTCTTCGTTCAGGCCATCGTCACTGGAAAGGGCCCACTCGAGAATCTCGCTGACCACCTTGCTGACCCAGTCAACAACAATGCCTGGGCTTATGCCACCAACTTTGTTCCTGGAAAATGA 798 60.4 MAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRKSASKPVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8639904 8640701 - Lag0025111.1 Lac10g1066 583597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g1066 265 FunFam Chlorophyll a-b binding protein, chloroplastic 56 258 - -
Lac10g1066 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 4 265 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Lac10g1066 265 Gene3D Chlorophyll a/b binding protein domain 56 258 - -
Lac10g1066 265 Pfam Chlorophyll A-B binding protein 65 232 IPR022796 -
Lac10g1066 265 SUPERFAMILY Chlorophyll a-b binding protein 48 262 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g1066 Lac-Chr10:8639904 Lac1g3495 Lac-Chr1:54257968 1.50E-149 dispersed
Lac10g1066 Lac-Chr10:8639904 Lac5g1661 Lac-Chr5:33724674 8.20E-95 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g1066 K08912 - csv:101211276 526.168