Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g1109 ATGGACGGCGGCGCAGGGAGGTTGAGGGCGTCGAGTTCGAGCAATGGTGGCAGAACCCGCGTGGGGAAATACGAGTTGGGTAGAACCCTAGGCGAGGGCAACTTCGCGAAGGTCAAGTTTGCTCGGAACTCGGAGACCGGCGATAACGTGGCGATCAAAATTCTTGACAAGGAGAAAGTTCTTAAGCACAAGATGATCGGTCAGATTAAACGTGAGATATCAACGATGAAATTAATCAGGCATCCAAACGTCATCCGTATGTTTGAGGTGATGGCTAGCAGGACCAAAATATACATTGTGTTGGAGTTTGTCACTGGTGGGGAACTATTTGACAAGATTGTTAGTAGAGGCAGGATGAAGGAAGATGAAGCAAGAAAGTATTTTCAGCAGCTTATTAATGCGGTGGATTATTGTCACAGCAGAGGTGTTTTTCACAGAGACTTAAAGCCAGAGAATTTGCTGCTTGATGCTAATGGCGCTCTTAAAGTTTCAGATTTTGGTTTGAGTGCACTACCTCAGCAAGTTCGTGAAGATGGATTGCTCCACACAACATGTGGGACACCAAATTATGTTGCTCCAGAGGTGATCAATAACAAAGGCTATGACGGGGCAAAGGCTGATTTGTGGTCTTGTGGTGTAATTCTTTTTGTCTTGATGGCTGGTTATTTACCTTTTGAAGATGCCAACCTGGTTGCGTTGTATAAGAAGATACACAAGGCTGATTTCACTTGTCCACCATGGTTCTCTACAAATGCAAAGAAACTAATCAAAAGAATTTTGGACCCTAATCCCTCAACGAGAATTACCATTCAAGAGGTCATTGAAAATGAATGGTTTAGAAAAGGTTATAAGCCGCCTACTTTTGAACAAGCTGATATTTGTCTTGATGATGTAGATGCTATCTTCGGTGAAACAGTGGATTCGGGTAGTCTCGTTGTGGAAAGGAAAGAGGAAGGACCTAATGCCCCTCTTACAATGAATGCATTCGAGCTCATCTCTAAATCTCAAGGCCTCAACCTCAGTTCTCTTTTTGAGAAACAAATGGGGATTGTTAAACGGGAAACAAGGTTCACATCCAATCGACCTGCAAAAGAGATCCTTTCTAAAATTGAGGAAACTGCGACGCCTTTGGGTTTTGGTGTGAAGAAAAATAACTACAAGATGAAACTTCAAGGTGAAAAAACAGGTCGTAAAGGCCATTTATCAGTTGCAACAGAGATTTATGAGGTTGCCCCGTCACTGTACATGGTTGAGCTCCGCAAGGCTGGAGGAGATACATTAGAATTTCACAAGTTTTATAAGAGCCTCAAGACCGGGCTGAAAGACATCGTCTGGAAACATGAAGAGGATGGAGATGAAGATAGTGATTTGATATGTGCTCTTACTCTGATATCTTTAGATATTTCTAGGAAACGGTCTACTCGCAAGTTTGGTGTCTAG 1440 42.92 MDGGAGRLRASSSSNGGRTRVGKYELGRTLGEGNFAKVKFARNSETGDNVAIKILDKEKVLKHKMIGQIKREISTMKLIRHPNVIRMFEVMASRTKIYIVLEFVTGGELFDKIVSRGRMKEDEARKYFQQLINAVDYCHSRGVFHRDLKPENLLLDANGALKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVINNKGYDGAKADLWSCGVILFVLMAGYLPFEDANLVALYKKIHKADFTCPPWFSTNAKKLIKRILDPNPSTRITIQEVIENEWFRKGYKPPTFEQADICLDDVDAIFGETVDSGSLVVERKEEGPNAPLTMNAFELISKSQGLNLSSLFEKQMGIVKRETRFTSNRPAKEILSKIEETATPLGFGVKKNNYKMKLQGEKTGRKGHLSVATEIYEVAPSLYMVELRKAGGDTLEFHKFYKSLKTGLKDIVWKHEEDGDEDSDLICALTLISLDISRKRSTRKFGV 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9128808 9134667 + Lag0025154.1 Lac10g1109 583640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g1109 479 Pfam Protein kinase domain 24 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g1109 479 CDD STKc_SnRK3 23 278 - -
Lac10g1109 479 CDD CIPK_C 327 442 - -
Lac10g1109 479 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g1109 479 ProSiteProfiles NAF domain profile. 321 345 IPR018451 GO:0007165(InterPro)
Lac10g1109 479 ProSitePatterns Protein kinases ATP-binding region signature. 30 53 IPR017441 GO:0005524(InterPro)
Lac10g1109 479 Gene3D Kinase associated domain 1, KA1 326 446 - -
Lac10g1109 479 MobiDBLite consensus disorder prediction 1 23 - -
Lac10g1109 479 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 14 434 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Lac10g1109 479 SUPERFAMILY Protein kinase-like (PK-like) 21 290 IPR011009 -
Lac10g1109 479 FunFam Non-specific serine/threonine protein kinase 17 320 - -
Lac10g1109 479 SMART serkin_6 24 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g1109 479 FunFam Non-specific serine/threonine protein kinase 320 446 - -
Lac10g1109 479 ProSiteProfiles Protein kinase domain profile. 24 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g1109 479 FunFam Non-specific serine/threonine protein kinase 15 103 - -
Lac10g1109 479 Pfam NAF domain 323 383 IPR004041 GO:0007165(InterPro)
Lac10g1109 479 Gene3D Transferase(Phosphotransferase) domain 1 18 325 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g1109 Lac-Chr10:9128808 Lac9g2932 Lac-Chr9:47112424 2.20E-178 dispersed
Lac7g0095 Lac-Chr7:797547 Lac10g1109 Lac-Chr10:9128808 3.60E-180 transposed
Lac1g3541 Lac-Chr1:54641919 Lac10g1109 Lac-Chr10:9128808 1.50E-213 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85675 PF00069 Pkinase 3.20E-74 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g1109 - - - 0.0