Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g1118 ATGAGGCTCTCTGCGGCTGGTTTTAGTCCTCAGGCTCCGGAAGGTGAGAGGAGGGTCCTGAATTCCGAGCTTTGGCATGCGTGCGCGGGTCCTCTTGTTTCTCTCCCGGCTGTTGGCAGTCGGGTTGTTTATTTTCCTCAAGGTCATAGTGAGCAGGTTGCTGCGTCTACCAATAAAGAGGTGGATGCCCAGATCCCGAATTACCCGAGTTTACCTCCGCAGCTCATATGTCAACTTCACAACCTGACAATGCATGCAGATGCTGAGACAGATGAAGTATATGCTCAGATGACTCTGCAACCCCTGAGTGCTCAAGAATTGAAGGAAGCCTACCTTCCAGCCGAGTTGGGCACTCCGAGTAGGCAGCCTACGAATTATTTTTGCAAAACTTTGACAGCCAGTGATACCAGCACACATGGAGGTTTCTCTGTTCCTCGCCGTGCTGCAGAAAAAGACTTCTCCATGCAGCCCCCAGCCCAAGAGCTGATAGCGAGGGACCTACATGATAATGAGTGGAAGTTTAGACATATATTTCGTGGCCAGCCTAAGAGACACCTTCTAACAACTGGATGGAGTGTCTTCGTGAGCGCTAAAAGACTTGTTGCTGGTGATGCTGTGCTTTTTATTTGGAATGAGAAGAACCAATTGCTCCTCGGAATCAGGCGTGCAAACCGACCGCAAACTGTAATGCCTTCATCCGTTTTATCGAGTGATAGCATGCATTTAGGACTCCTTGCTGCTGCAGCTCATGCAGCTGCTACCAATAGTCGGTTTACCATATTTTTTAATCCAAGGGCTAGCCCTTCAGAGTTTGTCATACCACTGACCAAATATGTAAAGGCAGTCTACCATACTCGTGTTTCTGTTGGGATGCGCTTTAGGATGCTGTTTGAAACGGAAGAATCAAGTGTTCGTCGCTACATGGGGACAATCACTGGCATTAGTGACTTGGATCCTGTAAGATGGCAAAATTCACATTGGCGCTCAGTCAAGGTTGGTTGGGATGAGTCAACAGCAGGAGAGCGGCAGCCAAGAGTGTCCTTGTGGGAAATTGAGCCCTTGACAACATTTCCAATGTATCCATCACCATTTCCACTTCGACTGAAGCGACCATGGCCAACTGGACTGCCTTCTTTCGGCCTCAAGGATAGTGAGCTCGGAATGAATTCTCCATTCATGTGGCTACGGGGAGATAATAGCGATCGTGGCATCCAGTGTCTCAACTTTCAGGGAACTGGGGTCTCACCTTGGATGCAGCCGAGACTTGATACATCCATGATTGGTATGCAATCTGACGTGTATCAAGCCATGGCTGCTGCAGCTCTTCAGGAGATGAGGGCAATTGATTATTCCAAAATAGCACCTGCATCTATTCTGCAATTCCAGCAGCCCCAAGGTCTCCCTTGTCAGTCTTCTTCCTTGATGCAGCCTCAGATGTTGCATCAGTCTCAACCTCAGCAAGCGTTTCTTCAATCCGTTCAAGAAAACCAGCAGCATTCTCAGTCTCAGGCTCAGGCTCAAACTCAGTCGCATCATCTTCAGCCACAATTGCAGCCTCAGCAGTCGTTCAATAATCAACAGCAGCAGCATCAACAGCAACCAAGGCAGCCACAGCCACTTGTTGATCATCAGTCGATTCCTTGTACAATTCCTGCTATATCTCAGTTTGCTTCATGTTCACAATCCCAGTCACCGTCCCTGCAAACCGTTCCTTCCCTTTGCCAACAACCAAGTTTTTCTGATTCCAATGGTAACCCTGTAACTAGTCCTACTGTTTCCCCATTGCATAGCCTTGCGGGGTCATTTGTCCAAGATGAATCATCTCAGCTTCTTAACCTTCAAAGAGCCAATTCAATAATTCCTTCAGCTGGCTGGCCTTCAAAGAGAGCTGCTATTGACCCTCTCTCTACTGGAGCTTCTCAGTATTTTCTTCCTCAAGTGGAAAATTTGGGAACATCGCAGAGTAGTATTTCTCAGAATACAGTTGCATTGCCACCCTTCCCTGGAAGGGAATGTTCTATTGATGATCGAGACTCGGGTTCTGATCCACAAAACCATGTTTTATTTGGTGTGAATATAGAGTCTGCATCCCTTCTAATGCAGAATGGGATGTCAAACCTTAGGGGAGTAGGCAATGATAGTGTTTCTACAACTCTACCTTTTTCTTCCAATTATATGAGCACTGCTGGTACCGATTTTTCTGTGAATCCAACAATGACGTCCTCAAATTGCATCGATGAATCGGGTTTTCTGCAGTCTCATGAAAATGTGGGCCAAATAAACCCACCAAACGGAACCTTTGTCAAGGTTCATAAATCAGGGACCTACAGTAGGTCATTAGATATAACCAAATTCAACAACTATCCTGAGCTACGCAGCGAGCTTGCTCGCATGTTTGGCCTAGAAGGTGAGTTGGAGGATCCTTTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGGGAGAATGACGTTCTTCTCCTCGGAGATGGCCCGTGGCCGGAGTTTGTAAACAGTGTATGGTGTATCAAAATACTTTCACCGGAGGAAGTTCAGGATATGGGCAAACGAGGTTTAGAACTTCTGAACTCAGTGCCAATCCAGAGGCTCTCGAACAGCACCTGTGACGACTATGGTAGTCGACAGGACTCGAGAAATTTGATTTCAGGAATAACCTCTGTCGGGCCTCTCGACTACTGA 2697 47.27 MRLSAAGFSPQAPEGERRVLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEVDAQIPNYPSLPPQLICQLHNLTMHADAETDEVYAQMTLQPLSAQELKEAYLPAELGTPSRQPTNYFCKTLTASDTSTHGGFSVPRRAAEKDFSMQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDAVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFFNPRASPSEFVIPLTKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPTGLPSFGLKDSELGMNSPFMWLRGDNSDRGIQCLNFQGTGVSPWMQPRLDTSMIGMQSDVYQAMAAAALQEMRAIDYSKIAPASILQFQQPQGLPCQSSSLMQPQMLHQSQPQQAFLQSVQENQQHSQSQAQAQTQSHHLQPQLQPQQSFNNQQQQHQQQPRQPQPLVDHQSIPCTIPAISQFASCSQSQSPSLQTVPSLCQQPSFSDSNGNPVTSPTVSPLHSLAGSFVQDESSQLLNLQRANSIIPSAGWPSKRAAIDPLSTGASQYFLPQVENLGTSQSSISQNTVALPPFPGRECSIDDRDSGSDPQNHVLFGVNIESASLLMQNGMSNLRGVGNDSVSTTLPFSSNYMSTAGTDFSVNPTMTSSNCIDESGFLQSHENVGQINPPNGTFVKVHKSGTYSRSLDITKFNNYPELRSELARMFGLEGELEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPEEVQDMGKRGLELLNSVPIQRLSNSTCDDYGSRQDSRNLISGITSVGPLDY 898
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9250018 9255414 - Lag0025163.1 Lac10g1118 583649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g1118 898 Pfam Auxin response factor 248 330 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Lac10g1118 898 MobiDBLite consensus disorder prediction 470 543 - -
Lac10g1118 898 MobiDBLite consensus disorder prediction 570 589 - -
Lac10g1118 898 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 20 856 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Lac10g1118 898 FunFam Auxin response factor 286 358 - -
Lac10g1118 898 FunFam Auxin response factor 761 854 - -
Lac10g1118 898 Pfam AUX/IAA family 761 854 IPR033389 -
Lac10g1118 898 Gene3D - 286 358 - -
Lac10g1118 898 SUPERFAMILY DNA-binding pseudobarrel domain 112 251 IPR015300 -
Lac10g1118 898 ProSiteProfiles PB1 domain profile. 765 849 IPR053793 -
Lac10g1118 898 SUPERFAMILY CAD & PB1 domains 755 840 - -
Lac10g1118 898 Gene3D - 125 223 IPR015300 -
Lac10g1118 898 FunFam Auxin response factor 125 224 - -
Lac10g1118 898 CDD B3_DNA 126 222 IPR003340 GO:0003677(InterPro)
Lac10g1118 898 Gene3D - 763 854 - -
Lac10g1118 898 ProSiteProfiles B3 DNA-binding domain profile. 127 224 IPR003340 GO:0003677(InterPro)
Lac10g1118 898 SMART B3_2 127 224 IPR003340 GO:0003677(InterPro)
Lac10g1118 898 Pfam B3 DNA binding domain 127 224 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g1118 Lac-Chr10:9250018 Lac2g0162 Lac-Chr2:1232499 5.50E-167 dispersed
Lac1g3550 Lac-Chr1:54711541 Lac10g1118 Lac-Chr10:9250018 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22769 PF02309 AUX_IAA 1.00E-06 CL0072 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g1118 K14486 - csv:101211705 1596.25