Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g1141 ATGTTAGACGAGCTCGCCCGAGAATCAGACGGGGAGCTAGGTTACGAAGCAGCCGTTAATTCGAATTCCAGTCAGAATTCTATGAGCAGTGAAAGTTGCAGCAGTTTCAGTCGCCTCTCGTTCGATGCCGCGATCGATTTCCCTACCTCCCGATCCTCGCCGGAGAGTCTCGATTTGAAGCCTCACCGATCGTCTGATTTCGCTTACTCCGCCATTCGTCGCCGGAAGTCTAAACTTACTTTCCGTGATTTTCGTCTCCTCCGCCGCATCGGCGCCGGCGATATTGGCACCGTCTATCTATGTCAGTTGCGGAACTTGACCGATGGTTGCTACGATGACGAAGACGATGATCCGTGTCTGTACGCGATGAAAGTGGTGGATAAGGAGGCGTTGGAATTGAAGAAGAAGGTGCAGAGGGCGGAAATGGAGAGGAAAATATTGAAGATGCTGGACCATCCGTTTTTGCCTACTCTCTACGCTGAGTTTGAGGCGTCGCATTTCTCTTGCATCGTTATGGAGTTCTGTTCCGGCGGCGACTTGCATTCTCTCCGCCATAAACAGCCGCGAAAACGCTTCTCTCTCAGCTCCGCAAGGTTTTATGCGGCTGAAGTTCTAGTTGCTTTAGAGTACCTTCACATGCTCGGAATCATCTACAGAGACCTTAAACCGGAGAATGTCCTCGTCCGATCAGACGGTCACATCATGCTCTCGGATTTCGATTTATCTCTCTGCTCCGACGCCATCCCAGCCGTTGAATCACCGGATTCCTCCCCCAATCCGGCATTCCCCGACGCGACGGCGTACCCCAGACCCAACACCGCCGCCGCCCCCTCGGCCACCTCGACCCCCTTTTCCTGCCTTTACAATCGGCTTTTCCGGTCACGCAAGGTCCAAACCCTGACCCCCAACTGGCTCTTCGTCGCCGAACCCGTCTCCGCCCGGTCCTGCTCCTTCGTCGGCACCCACGAGTACGTCTCGCCGGAAGTCGCCGCCGGCGGCTCCCATGGCAACGCCGTCGACTGGTGGGCCTTCGGTGTATTTCTCTACGAGCTGATCTACGGCCGGACGCCGTTCGCGGCCTCATCCAATGAGACGACGCTAAGGAACATCATAAAGAAGCCATTGACGTTTCCGACCGGTGCGTCCTCCGGCGCGCTTGAGCATCACGCGCGGGACCTCATATCCGGGTTGCTCAACAAGGACCCGACCCGGAGACTCGGGTCGAAACGCGGGTCCGCCGACATCAAGAAGCATCCATTCTTCAAGGGCCTGAACTTCGCCCTCATACGTTCGCTCACTCCGCCGGAGGTCCCCGGCGTACGGCGGAGGAAGTCGATGCCGGCGCCGGTGTCCAAAACCAAGGACAAGGCAGCTCACTCGACCGGGTTCGATTACTTCTGA 1401 56.89 MLDELARESDGELGYEAAVNSNSSQNSMSSESCSSFSRLSFDAAIDFPTSRSSPESLDLKPHRSSDFAYSAIRRRKSKLTFRDFRLLRRIGAGDIGTVYLCQLRNLTDGCYDDEDDDPCLYAMKVVDKEALELKKKVQRAEMERKILKMLDHPFLPTLYAEFEASHFSCIVMEFCSGGDLHSLRHKQPRKRFSLSSARFYAAEVLVALEYLHMLGIIYRDLKPENVLVRSDGHIMLSDFDLSLCSDAIPAVESPDSSPNPAFPDATAYPRPNTAAAPSATSTPFSCLYNRLFRSRKVQTLTPNWLFVAEPVSARSCSFVGTHEYVSPEVAAGGSHGNAVDWWAFGVFLYELIYGRTPFAASSNETTLRNIIKKPLTFPTGASSGALEHHARDLISGLLNKDPTRRLGSKRGSADIKKHPFFKGLNFALIRSLTPPEVPGVRRRKSMPAPVSKTKDKAAHSTGFDYF 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9560175 9562344 - Lag0025186.1 Lac10g1141 583672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g1141 466 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac10g1141 466 ProSiteProfiles Protein kinase domain profile. 84 421 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g1141 466 MobiDBLite consensus disorder prediction 16 32 - -
Lac10g1141 466 Gene3D Transferase(Phosphotransferase) domain 1 314 439 - -
Lac10g1141 466 SMART serkin_6 84 421 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g1141 466 FunFam protein kinase PINOID 175 243 - -
Lac10g1141 466 MobiDBLite consensus disorder prediction 437 466 - -
Lac10g1141 466 SUPERFAMILY Protein kinase-like (PK-like) 63 437 IPR011009 -
Lac10g1141 466 PANTHER FLIPPASE KINASE 1-RELATED 30 444 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Lac10g1141 466 Gene3D Phosphorylase Kinase; domain 1 82 174 - -
Lac10g1141 466 FunFam protein kinase PINOID 2 82 174 - -
Lac10g1141 466 Coils Coil 123 150 - -
Lac10g1141 466 Pfam Protein kinase domain 85 242 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g1141 466 Pfam Protein kinase domain 315 421 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac10g1141 466 FunFam serine/threonine-protein kinase D6PK-like 313 439 - -
Lac10g1141 466 Gene3D Transferase(Phosphotransferase) domain 1 175 242 - -
Lac10g1141 466 MobiDBLite consensus disorder prediction 1 32 - -
Lac10g1141 466 CDD STKc_phototropin_like 82 444 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g1141 Lac-Chr10:9560175 Lac6g2951 Lac-Chr6:47118528 3.90E-108 dispersed
Lac10g1141 Lac-Chr10:9560175 Lac1g3129 Lac-Chr1:51633641 1.20E-101 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85676 PF00069 Pkinase 9.40E-32 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g1141 - - - 0.0