Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g1154 ATGGACAATGGTGACATTGAGAGCGGGGAAGAGGAGTTTCATGGGCAGAGGGGAAGGAAGTACCGCCCTGTGGAAGCCCATGATCGTGCTGTTCTTGAAATGTCTTCCATGGATCCGGGATCCTCGTCTTCTTCGTCTTCCATTCCCATACAGCATCCTTCTCTGAAGAAGGTAAAAGTGGGTATTCAGACAGGTACTGATGAAAAAAAAGGGAAATCTCCTACTCGTATCGAAGTTAATGGCCCTCAGCGAGATTCCAAGTTGGAGTTTTTTGGTTTCGATTCTCTAGTCAATATTCTAGGCCTTAAGAGTATGATGGGGGAACAAATTCAAGCACCTTCTAGTCCTCGAGATGGTGAGAACGTTCCTATCACTCAGGGGTTGCCAAAGACCACTGAAGTCAAATCGGGTACATTGATGGGTGTATTTATCCCATGCTTACAGAACATATTGGGAATCATTTACTATATTCGATTTTCTTGTCTAGGTCTTGAGGCGGAGTTGACTTTCTTTCAAAATGGAATTGGAGAAAGCACCTTTGCTGAAATTTCCACGGTCTATTTCCTTTTAAGAGAAATGGAGACATTTTTCATGAGAAGCATGAACTTGGAGAAGCCGTTTGGTGAGGTAGAGATCTTCAAAGCCATACAAGGCTTTGAAAGATTGAAGGAGGTGCTTCCGCATATTATTAGCAATGATCAAGCTAACTTTATTCAAGGGAGACAAACCTTAGATCCTATCCTAGTGGTTGTGGAAACGGTAGAAGATTACACCCTCAATCGCTCGGTGCAATTCTGCTCAGAGAAAAATATCTTAAAGGGCCTTACGGTGGGAAAAGATAAAGTTGAAATCTCCATCCTCCAATATGCTGATGATACCATGGTGTTTTGTCCCAACGAAGATACGACTCTTGTAGGATGGTGGGAGATCTTGAATTTGTTCATGGTAGGGTCTGGGCTCTTTATGAATTTGGCCAAAACTTCGATGTTTGGAATTAATTTGAATATGGAAGATGTGGTTGTGTGGTTTGGATGTCAAGCTGAATCTTTGCCAATAAATTACCTTGGCTTTTCCTTGGGAGGAAATCATCATAGAAGAGTGTTTTGGGACCCTTTGTTGGATAAGCTCAGAGCTAAGTTGGATGTCTGGAGGTGTTTCCTTCTCTCTGGGGGAGAGAGTGATTGGAGGTGTTTCCTTCTCTCTGGGGAGAGAGTGACTTTGAAAGCCATAAGCGACGGAGCTGCCGGCGTCCCATGTCCATATGTCTGTGTCCATGTCCTGCGTCCCATGTCCATATCCATGCTTCTTAGCTCATGTCTTATCCCTACAAATTTGTTTGAAACTGTGGGAAAGAAAAGGAACACCTGTTCTCTTCTTTATTCTCTACTTTTCGCCTTTGAAATAGTAGAAAAGATAACCAGCCACATTTCTCCATCATCCCAAATCCATTTGTGCCTTTCCCTTCACTTCACCTTGTCTTCGCCGTCGTTACTTGCCTACTCCTTGCTGTGGATTGTTGGCATGGCTGGCATTGGTGAGTCATTAGTGCTGGTGGCGTTTTGTGGTTTATGTACGTTCTTGACTTCGATTTCACTAAGTGCTATTGCAACTAATGGTGCAATGAAGGGTGGGGGACCATATTATCTGATAGGTCGTGCCCTTGGTCCAGAGGTTGGAGTTAGCATTGGGCTATGTTTCTTTCTCGGAAATGCAGTTGCCGGTGCTCTTTATGTGTTGGGAGCTGTAGAAACATTTTTGAATGCTGTACCAGCTGCAGGGATATTCAGAGAGACTGTAACAAAAGTTAATGGAACAACTGTTGCAGAACCAATACAAAGTCCAAGTTCACATGACTTGCAAGTTTATGGCATTATTGTGACGATTCTTCTGTGCTTCATTGTGTTTGGTGGTGTGAAGATGATTAATAGGGTTGCTCCTGCTTTCCTTATTCCAGTCTTGTTCTCAGTACTTTGCATATTTCTTGGAATTTTTCTGGCAAAGAAAAACGACCCTGCAGATTTCAAGCACTACACTTACCTCTAA 2043 43.12 MDNGDIESGEEEFHGQRGRKYRPVEAHDRAVLEMSSMDPGSSSSSSSIPIQHPSLKKVKVGIQTGTDEKKGKSPTRIEVNGPQRDSKLEFFGFDSLVNILGLKSMMGEQIQAPSSPRDGENVPITQGLPKTTEVKSGTLMGVFIPCLQNILGIIYYIRFSCLGLEAELTFFQNGIGESTFAEISTVYFLLREMETFFMRSMNLEKPFGEVEIFKAIQGFERLKEVLPHIISNDQANFIQGRQTLDPILVVVETVEDYTLNRSVQFCSEKNILKGLTVGKDKVEISILQYADDTMVFCPNEDTTLVGWWEILNLFMVGSGLFMNLAKTSMFGINLNMEDVVVWFGCQAESLPINYLGFSLGGNHHRRVFWDPLLDKLRAKLDVWRCFLLSGGESDWRCFLLSGERVTLKAISDGAAGVPCPYVCVHVLRPMSISMLLSSCLIPTNLFETVGKKRNTCSLLYSLLFAFEIVEKITSHISPSSQIHLCLSLHFTLSSPSLLAYSLLWIVGMAGIGESLVLVAFCGLCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGALYVLGAVETFLNAVPAAGIFRETVTKVNGTTVAEPIQSPSSHDLQVYGIIVTILLCFIVFGGVKMINRVAPAFLIPVLFSVLCIFLGIFLAKKNDPADFKHYTYL 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9702434 9715191 + Lag0025199.1 Lac10g1154 583685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g1154 680 MobiDBLite consensus disorder prediction 36 52 - -
Lac10g1154 680 Pfam Amino acid permease 499 678 IPR004841 GO:0016020(InterPro)|GO:0055085(InterPro)
Lac10g1154 680 Gene3D Amino acid/polyamine transporter I 486 678 - -
Lac10g1154 680 MobiDBLite consensus disorder prediction 1 81 - -
Lac10g1154 680 MobiDBLite consensus disorder prediction 8 32 - -
Lac10g1154 680 PANTHER SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS 97 162 IPR004842 GO:0006811(InterPro)|GO:0006884(PANTHER)|GO:0015377(InterPro)|GO:0015379(PANTHER)|GO:0016020(InterPro)|GO:0055064(PANTHER)|GO:0055075(PANTHER)|GO:1902476(PANTHER)|GO:1990573(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g1154 Lac-Chr10:9702434 Lac10g1661 Lac-Chr10:18192759 3.80E-51 dispersed
Lac10g1152 Lac-Chr10:9687816 Lac10g1154 Lac-Chr10:9702434 1.30E-19 proximal
Lac5g2300 Lac-Chr5:41682889 Lac10g1154 Lac-Chr10:9702434 3.30E-06 transposed
Lac10g1154 Lac-Chr10:9702434 Lac6g2229 Lac-Chr6:38946582 4.60E-17 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g1154 K14427 - csv:101216218 313.923