Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g1163 ATGGCTCTTGTCATGCATAGAGAATCCTCGAATAAGCAGATGGATACAAGCAAGTACGTGAGATATACGCCTGAGCAAGTCGACGCGTTAGAGAGGGTTTATGCTGAATGTCCAAAGCCCAGTTCGTTGAGAAGGCAACAGCTCATTCGGGAGTGTCCCATTCTCTCTAATATTGAGCCTAAGCAGATCAAAGTTTGGTTCCAGAATCGCAGATGTCGTGAAAAGCAAAGGAAGGAAGCTTCTCGTCTTCAAACAGTTAATAGGAAGCTGACTGCGATGAATAAGTTGTTGATGGAAGAGAATGACCGTCTGCAGAAGCAGGTCTCTCGTTTGGTTTATGAGAACGGGTACATGAGACAGCAACTGCATACTGCATCTGGAACAACCACGGACAATAGCTGTGAGTCCGTGGTCATGAGTGGTCAACACCATCAACAGCAAAACCCAACTAAGCATACCCAAAAGGATGCTAATAACCCAGCTGGTCTTCTTGCGATAGCCGAGGAGACCTTGGCAGAGTTCCTTTCCAAGGCAACAGGAACTGCTGTCGACTGGGTTCAAATGATTGGGATGAAGCCTGGTCCGGATTCAATTGGGATTGTTGCTGTTTCCCGCAACTGCAATGGGGTAGCAGCAAGAGCCTGTGGTTTAGTGAGTCTTGAGCCAACGAAGGTGGCTGAAATTCTCAAAGATCGTCTATCATGGTTTCGTGACTGCCGCTGTGTTGATGTATTAAGTGTAATCTCTACAGGAAACGGGGGGACTATAGAACTCTTATATATGCAGACATATGCACCTACAACTTTAGCAGCAGCACGTGACTTTTGGACTCTTCGATACACTACAAGCTTGGAAGATGGCAGCCTAGTGATATGTGAGAGATCGTTGACGTCGTCTACTGGTGGCCCATCGGGGCCTCCTCCATCCAGTTTTGTAAGAGCTGAAATGCTTCCAAGTGGGTATCTTATTCGAGCTTGTGAGGGCGGTTCCCTTATTCACATTGTTGATCATGTTGATTTAGATGCCTGGAGCGTTCCTGAAGTTCTAAGGCCACTTTATGAATCAACAAAGATTCTAGCTCAGAGAATGACTGTGGCTGCCTTACGCTATGTTCGGCAAATTGCTCAAGAGGCAAGTGGAGAAATTCAATTGGGTGGGGGCCGCCAACCAGCTGTTTTAAGGACTTTCAGTCAAAGGCTCTGCAGGGGTTTTAATGATGCAGTAAATGGATTTGTGGATGATGGTTGGTCGCTTATGGATAGTGATGGAGTAGAGGATGTGACAGTTGTTATTAATTCATCTCCAAACAAATTCCTTGGTTCGCAATACAACACATCATTGTATCCTACTTTTGGAGGTGTGTTGTGTGCCAAGGCGTCAATGCTGCTGCAGAATGTCCCCCCTGCTTTGCTTGTTCGTTTCCTGCGAGAGCATCGTTCAGAATGGGCTGATTATGGAGTTGATGCTTACTCTGCCGCATGTCTTAAAGCCAGTGCATATGCTGTTCCGTGTGCGAGACCCGGTGGCTTCCCTAGTGGTCAGGTCATTTTACCACTTGCGCATACCGTGGAGAATGAGGAGTTCTTGGAGGTTGTTCGGTTAGAGGGCCATGCTATGTTCCTGGAAGAAGCTGCTTTAGGTGGACGAGATATGTACTTATTGCAGCTGTGTAGTGGAGTTGATGAAAATGCAATTGGTGCCAGTGCTCAGCTTGTGTTTGCACCTATAGATGAATCGTTTGCCGATGATGCTCCCTTGTTGCCATCTGGTTTCCGTGTCATACCATTGGAGTCCAAAACGGATGCGCCTGCTGCTACCCGAACTTTGGATTTGGCATCTACTCTAGAAGTCCGACCTGGCACTACTCGTCCAGGTGGTGAAAGTGATGCTACAAATTATAACCTCAGGTCAGTCTTGACTATTGCATTCCAATTCACTTTTGAAAACCACATGCGGGATAGTGTGGCTGCCATGGCGAGACAATACGTGCGGACCGTTGTGGGATCAGTTCAGAGGGTTGCCATGGCTATCGCCCCCTCACAGCTTGGCTCCCAAATCAGTCCAAAAGGCCTTCCCGGCTCCCCGGAGGCTCTCACATTGGCCCAGTGGATCTCACGAAGCTACAGGATCCACACAGGGGCAGAGCTCTTTCAGGTTGAATCCCAGTCTGATGATGCTATCTTGAAGCAACTTTGGCACCATTCAGATACAATCTTGTGCTGCTCTGTCAAAACTAATGCATCTCCTGTGTTCACATTTGCAAACCAAGCTGGGCTCGACATGCTCGAAACTACCCTTGTAGCTCTTCAAGATATAATGCTTGACAAGATCCTCGACGATGCTGGTCGGAAGATACTTTGCTCCGAGTTCTCCAAGATAATGCAACAGGGATTTGCTTACCTTCCAGCAGGGATATGCGTCTCGAGTATGGGCAGACCGGTGTCGTATGAACAGGCAATTGCATGGAAAGTTCAGAATGATGATGATGTCCATCACTGTCTGGCTTTCATGTTCGTTAACTGGTCCTTTATGTGA 2535 47.5 MALVMHRESSNKQMDTSKYVRYTPEQVDALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSRLVYENGYMRQQLHTASGTTTDNSCESVVMSGQHHQQQNPTKHTQKDANNPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCNGVAARACGLVSLEPTKVAEILKDRLSWFRDCRCVDVLSVISTGNGGTIELLYMQTYAPTTLAAARDFWTLRYTTSLEDGSLVICERSLTSSTGGPSGPPPSSFVRAEMLPSGYLIRACEGGSLIHIVDHVDLDAWSVPEVLRPLYESTKILAQRMTVAALRYVRQIAQEASGEIQLGGGRQPAVLRTFSQRLCRGFNDAVNGFVDDGWSLMDSDGVEDVTVVINSSPNKFLGSQYNTSLYPTFGGVLCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAACLKASAYAVPCARPGGFPSGQVILPLAHTVENEEFLEVVRLEGHAMFLEEAALGGRDMYLLQLCSGVDENAIGASAQLVFAPIDESFADDAPLLPSGFRVIPLESKTDAPAATRTLDLASTLEVRPGTTRPGGESDATNYNLRSVLTIAFQFTFENHMRDSVAAMARQYVRTVVGSVQRVAMAIAPSQLGSQISPKGLPGSPEALTLAQWISRSYRIHTGAELFQVESQSDDAILKQLWHHSDTILCCSVKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDDAGRKILCSEFSKIMQQGFAYLPAGICVSSMGRPVSYEQAIAWKVQNDDDVHHCLAFMFVNWSFM 844
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9794037 9801076 - Lag0025208.1 Lac10g1163 583694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g1163 844 Gene3D - 9 84 - -
Lac10g1163 844 ProSiteProfiles START domain profile. 156 383 IPR002913 GO:0008289(InterPro)
Lac10g1163 844 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677(InterPro)
Lac10g1163 844 CDD START_ArGLABRA2_like 160 375 - -
Lac10g1163 844 Pfam START domain 166 373 IPR002913 GO:0008289(InterPro)
Lac10g1163 844 Pfam MEKHLA domain 699 843 IPR013978 -
Lac10g1163 844 Pfam Homeodomain 18 76 IPR001356 GO:0003677(InterPro)
Lac10g1163 844 SMART START_1 165 374 IPR002913 GO:0008289(InterPro)
Lac10g1163 844 SMART HOX_1 15 81 IPR001356 GO:0003677(InterPro)
Lac10g1163 844 FunFam Homeobox-leucine zipper protein REVOLUTA 18 73 - -
Lac10g1163 844 Gene3D - 185 377 IPR023393 -
Lac10g1163 844 Coils Coil 87 114 - -
Lac10g1163 844 SUPERFAMILY Bet v1-like 166 376 - -
Lac10g1163 844 CDD bZIP 70 109 - -
Lac10g1163 844 SUPERFAMILY Homeodomain-like 18 80 IPR009057 -
Lac10g1163 844 CDD homeodomain 18 78 IPR001356 GO:0003677(InterPro)
Lac10g1163 844 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 12 844 IPR044830 GO:0003700(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g1163 Lac-Chr10:9794037 Lac9g2585 Lac-Chr9:44396202 0.00E+00 dispersed
Lac1g3581 Lac-Chr1:55036298 Lac10g1163 Lac-Chr10:9794037 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22772 PF01852 START 1.30E-51 CL0209 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g1163 K09338 - csv:101211318 1597.79