Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g1164 ATGAGTCATTTTTCAGTGGATTTCAGGAGACCTGAATCAGCTAAATGTAGATTGAAAGAGTTATTGCTTCAGAAAGATAATCAACTTTGTGCAGATTGTGGTGCTCCAGATCCTAAATGGGCCTCTGCAAATATTGGTGTGTTTATTTGCTTAAAATGTAGTGGCGTGCACAGAAGCCTTGGAGCGCACATATCAAAGGTTTTGTCAATAACATTGGATGAATGGTCTGATGATGAGATTGATGCAATGATAGAGGTTGGAGGAAATGGTTCTGCTAATGCAATATATGAGGCTTTTATCCCTGTTGGATATACAAAGCCTGAACCAAGTGCCAACCATGAGGAGCGTTCAAAGTTCATTCGGTCTAAGTATGAACTTCAAGAATTTTTAAAACCTAGCTTGCGAATTGTGTCCAATCACTCCTCAAAGAGTCCTGAGGAGCCGAGTTATCTTAAAGAGATTGCTGATGGCTTTCGAAGCTCAAATTCTTCAAAGATATCACCACAAGAGGGCATGGTTGAATTTATGGGAGTCCTGAAAGTCAATGTGATTAGAGGCACAAACTTAGCCGTGAGAGATGTGAAGTCCAGTGATCCTTTCATTACCTTGACTCTTGGGCAACAGACGGCTAAAACAACGGTGATAAAGAGTAACTTGAATCCAGTTTGGAACGAGGAACTCATGCTGTCAGTTCCTCAGGAATATGGGCCCCTGAAGTTGAGACAGAAGGGTATGGCCATTTTCATTCCTTCACTTAATGGTACATTGCAGCAAGTGTTCGATCACGACGTTATTTCGGCTAATGACTTGATGGGTGAAGCAGAAATCGACCTCCAGCCAATGATAACATCAGCAATGGCATTTGGAGATGCTGAAATGTTAGAGAATATGCAGATAGGAAAATGGTTGAAGTCAGATGACAATGCCCTCATCGATGACAGCGCTGTCAATATCGTCGATGGCAAGGTGAAACAAGAGTTGTCACTCAGGCTCCAAAATGTAGAATCAGGTGAAGTGTACTTGGAACTAGAGTGGACGCCTCTTGATCTGTAG 1053 42.17 MSHFSVDFRRPESAKCRLKELLLQKDNQLCADCGAPDPKWASANIGVFICLKCSGVHRSLGAHISKVLSITLDEWSDDEIDAMIEVGGNGSANAIYEAFIPVGYTKPEPSANHEERSKFIRSKYELQEFLKPSLRIVSNHSSKSPEEPSYLKEIADGFRSSNSSKISPQEGMVEFMGVLKVNVIRGTNLAVRDVKSSDPFITLTLGQQTAKTTVIKSNLNPVWNEELMLSVPQEYGPLKLRQKGMAIFIPSLNGTLQQVFDHDVISANDLMGEAEIDLQPMITSAMAFGDAEMLENMQIGKWLKSDDNALIDDSAVNIVDGKVKQELSLRLQNVESGEVYLELEWTPLDL 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9835566 9838453 + Lag0025209.1 Lac10g1164 583695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g1164 350 SMART arf_gap_3 15 137 IPR001164 GO:0005096(InterPro)
Lac10g1164 350 SMART C2_3c 178 290 IPR000008 -
Lac10g1164 350 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 175 350 - -
Lac10g1164 350 Pfam C2 domain 177 281 IPR000008 -
Lac10g1164 350 CDD ArfGap 18 124 - -
Lac10g1164 350 Gene3D Arf GTPase activating protein 5 136 IPR038508 -
Lac10g1164 350 PRINTS HIV Rev interacting protein signature 27 46 IPR001164 GO:0005096(InterPro)
Lac10g1164 350 PRINTS HIV Rev interacting protein signature 46 63 IPR001164 GO:0005096(InterPro)
Lac10g1164 350 PRINTS HIV Rev interacting protein signature 67 88 IPR001164 GO:0005096(InterPro)
Lac10g1164 350 CDD C2_ArfGAP 177 337 - -
Lac10g1164 350 FunFam Arf-GAP with dual PH domain-containing protein 1 10 138 - -
Lac10g1164 350 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 6 349 IPR044518 GO:0005096(InterPro)|GO:0005543(InterPro)
Lac10g1164 350 SUPERFAMILY ArfGap/RecO-like zinc finger 17 132 IPR037278 -
Lac10g1164 350 Pfam Putative GTPase activating protein for Arf 18 131 IPR001164 GO:0005096(InterPro)
Lac10g1164 350 ProSiteProfiles ARF GTPase-activating proteins domain profile. 15 129 IPR001164 GO:0005096(InterPro)
Lac10g1164 350 ProSiteProfiles C2 domain profile. 160 293 IPR000008 -
Lac10g1164 350 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 175 348 IPR035892 -
Lac10g1164 350 Gene3D C2 domain 175 349 IPR035892 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g1164 Lac-Chr10:9835566 Lac13g0746 Lac-Chr13:5823561 1.20E-85 dispersed
Lac1g3587 Lac-Chr1:55122436 Lac10g1164 Lac-Chr10:9835566 4.60E-135 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g1164 K12486 - csv:101211569 582.022