Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g1173 ATGTCTTTGCTCAGACCTTACGGAAAGGTCGACGAAACCGACCAAATGAGGCTCGACGCTCGCCGGAGAACTCGGAAGAGGATTGCTGTCATTGTCCTGTCCTCTGTTGTTCTTGTTGGTGTTGTTGTTGCTGTTGTGTTTGGGACTAGAAATGGTTCCAAGAATGATGACTTTAACAATAACAATGGTGCTCTTTCAACTTCCATCAAAGCAGTTTGTGATGTGACTTTGTATCCTGATACTTGTCACAATGCTTTTGGTCCTTTAGCTAACTCGAGCCGCCTCGACCCCGGTCAGATCCCCAAGCTTTCGGTTCAATTGGCGCTCGACGAACTGTCGCGAGTGGCTGACTACATTTTTCACCATGCCATTACCAATTCAACTGACAATAAGACCATATTGGCTTTGAAAAGTTGTCATGAACTCTTGGACTTGGCATTGGATCATTTGAACATGACAATGTCTTCTAGTGACATTACATTGCTGAAAGCTGTGGATGGTTTGAAAACATGGCTAACTTCAGCAGCTACTTACCAGCAGACTTGCATCGACGGCCTCAACGATGTCGATCCGGCTTTGGCGAACATCATTGCGAATTACTTGAAGAACTCCACTGAATTGACCAGCAATGGCCTTGCCATTGTGTCCTTCTTTTCGAAGCTTACGGATTCTTTCAATCTACGACGGTTGATGAGTTATGAAGATCACCAAAGCAATGGAGATTGGGCGCGACCGATACTCCGAAAGCTAGCTCAGAAAGATCTCAGGAAGCAGGCTGACATTGTCGTAGCAGCCGACGGTTCGGGGAAGTACAAAACAATCAATGCAGCTCTCAAGGCTGTTCCTGATAAGAGCAAGAAGAGAAGTGTGATCTATGTGAAGAAGGGAACTTATAAGGAGAATGTTGAAGTTGTGAAGAACAAATGGAATGTGGTGATGATTGGTGATGGAATGACTTCAACCATTGTAACTGGCAGCCTCAACTTCATAGATGGAACTCCAACATTTTCAACTGCAACATTTGCTGCAAAGGGAAAAGGCTTCATTGCCATAGACATGGGATTCAAGAACACGGCTGGACCGAGCAAACACCAAGCGGTTGCTCTGATGTCGACGTCCGACCAATCGATCTTCTACCGTTGCCAGATGGATGCATACCAAGACACTCTCTACGCGCACTCCAACCGCCAATTCTACCGCGAATGCAACGTTTTCGGCACGGTCGATTTCATCTTTGGAAACTCAGCAGTAGTCCTACAAAACTGCACCATTGCTCCCAAGTTGCCTCTTTTAGGCCAAAAGAACACAATCACTGCTCAAGGCAGGTTTGATCCCAATCAAAACACTGGCATTTCGATACAAGACTCTTCGGTCCGACCGTTCGAAAACTTGAAAACGACCGAAACTTACCTCGGTCGTCCGTGGAAGAACTACTCGACGACCGTGTTTATGCAGAGCTACCTGGGGAGCTTGATTCACCCAAATGGTTGGCTGCCTTGGGTTGGAACATCAGCACCAGACACCATATTCTATGCAGAGTTTCAAAACTATGGCCCTGGTTCTTCCACAGCCAATAGAGTCAAATGGAAAGGTTTGAAGAACATTGACATCAAAACTGCCAAAAAGTTCACAGTTTCCTCTTTCATTGATGGTAAAGATTGGATCTCAAAGGCACAAGTCCCCTTCAAAGCCAGCCTTTGA 1701 45.91 MSLLRPYGKVDETDQMRLDARRRTRKRIAVIVLSSVVLVGVVVAVVFGTRNGSKNDDFNNNNGALSTSIKAVCDVTLYPDTCHNAFGPLANSSRLDPGQIPKLSVQLALDELSRVADYIFHHAITNSTDNKTILALKSCHELLDLALDHLNMTMSSSDITLLKAVDGLKTWLTSAATYQQTCIDGLNDVDPALANIIANYLKNSTELTSNGLAIVSFFSKLTDSFNLRRLMSYEDHQSNGDWARPILRKLAQKDLRKQADIVVAADGSGKYKTINAALKAVPDKSKKRSVIYVKKGTYKENVEVVKNKWNVVMIGDGMTSTIVTGSLNFIDGTPTFSTATFAAKGKGFIAIDMGFKNTAGPSKHQAVALMSTSDQSIFYRCQMDAYQDTLYAHSNRQFYRECNVFGTVDFIFGNSAVVLQNCTIAPKLPLLGQKNTITAQGRFDPNQNTGISIQDSSVRPFENLKTTETYLGRPWKNYSTTVFMQSYLGSLIHPNGWLPWVGTSAPDTIFYAEFQNYGPGSSTANRVKWKGLKNIDIKTAKKFTVSSFIDGKDWISKAQVPFKASL 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9941960 9943755 + Lag0025218.1 Lac10g1173 583704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g1173 566 Gene3D Invertase/pectin methylesterase inhibitor family protein 66 218 IPR035513 -
Lac10g1173 566 NCBIfam pectinesterase inhibitor domain 53 215 IPR006501 GO:0004857(InterPro)
Lac10g1173 566 Gene3D - 255 566 IPR012334 -
Lac10g1173 566 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 68 219 IPR035513 -
Lac10g1173 566 SUPERFAMILY Pectin lyase-like 258 563 IPR011050 -
Lac10g1173 566 Pfam Pectinesterase 260 551 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lac10g1173 566 FunFam Pectinesterase 65 219 - -
Lac10g1173 566 ProSitePatterns Pectinesterase signature 2. 404 413 IPR033131 -
Lac10g1173 566 SMART PMEI_2 64 214 IPR006501 GO:0004857(InterPro)
Lac10g1173 566 Pfam Plant invertase/pectin methylesterase inhibitor 68 214 IPR006501 GO:0004857(InterPro)
Lac10g1173 566 CDD PMEI-like_3 71 220 - -
Lac10g1173 566 FunFam Pectinesterase 254 566 - -
Lac10g1173 566 PANTHER PECTINESTERASE 27 556 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Lac10g1173 566 ProSitePatterns Pectinesterase signature 1. 285 304 IPR018040 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g1173 Lac-Chr10:9941960 Lac12g2509 Lac-Chr12:42052130 6.80E-131 dispersed
Lac10g1173 Lac-Chr10:9941960 Lac7g0905 Lac-Chr7:7568420 3.20E-112 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g1173 - - - 0.0