Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g1260 ATGTTCTGCAGTTTGTTTGAGATGGACAAAAATAGTTATCAGCAAGCGGCCGGTGATTTGACTGATGTTATTCAAGCCACCTCCGCTGGCCTCTCCTCGGAATTCTCTCTCCACCCTTCTTCCGGCGACCGGCGGCTCTGGCCCCACCTTCCCGCCGATGACCCTTCCATGAGTTTTGGAGATCCGTTGTTGTTTTCGACTGGTGCTGCTCGAGATCCGTTTCTTCATCCTCATTTCTCTGCCTTCAATTTTGGTTCTGACGGCGGCGGCGGTGGTGTTGGGGGTTTGACGGCCGCGGCGGAACGGCCGTGTAATATATTTTCGAGGATGTTGCAGATCTCTCCGAGTTCGGATGGTGTAATTAGTACTCCTCCCTGTGAGTCGCCGGTCGTCGGGAGTTCGCCGAGCTCGACTTCGACTAAAGCTATGACTCATGGTGGCGGTGGCGGTGGCGGCGTGATTTCGAGTGGTGGCTCGAACCCACTTTGCTCAATGGATAATTCCGGATTGCAGATCTCTCCCCCGCGAAATTCAACCATTAAAAGAAGGAAGAGTCAAGTGAAGAAGGTGGTGTGCATTCCGGCGCCGGCGCCGGCGAACAGCCGATCAAGCAGTGGCGAAGTGGTTCCTTCCGATCTATGGGCATGGAGGAAGTACGGACAAAAACCCATCAAAGGATCTCCATATCCAAGGGGATATTACAGGTGCAGCAGCTCCAAGGGCTGCTCGGCCCGAAAGCAGGTCGAGCGCAGTCGCACCGACCCCAACATGCTCGTCATCACCTACACCTCGGAGCACAACCACCCATGGCCCACTCAACGCAACGCCCTCGCAGGCTCGACCCGCTCCCACCCTTCCCGAACCACCGTCACCGCCACCACCACCCATAAAACAAGCCCGAAACACGAGCACACCAACGAAAATCCGACAACAGCAGCCGTAAAGGAGGAAGAGATGGATGAAGACCAGACGACAGAGAAAGCAGCAGCAACAACAACAGCAAACGATCATAAGGAGGAAGGAGGTCCTCAAGAGTTCTCCTACGACCTAATTTTCGCCGAATTTGCCGATCAGATAAACGACAATCATTATCATCATCATCATCATTCGACGGACCCTTTGAACAACAATCTGCTGCTGTTCAGTAGCCATGGCTTTAGCACAGGAAATGATCAAGAGTGCAGTAAAGATCCATTTTTGGAGCTCTATGATTGGGCAGAGAATTCAAATGAGAGCTTGTTCAAAGATGCCAAGGGAGGTTGA 1263 52.97 MFCSLFEMDKNSYQQAAGDLTDVIQATSAGLSSEFSLHPSSGDRRLWPHLPADDPSMSFGDPLLFSTGAARDPFLHPHFSAFNFGSDGGGGGVGGLTAAAERPCNIFSRMLQISPSSDGVISTPPCESPVVGSSPSSTSTKAMTHGGGGGGGVISSGGSNPLCSMDNSGLQISPPRNSTIKRRKSQVKKVVCIPAPAPANSRSSSGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPTQRNALAGSTRSHPSRTTVTATTTHKTSPKHEHTNENPTTAAVKEEEMDEDQTTEKAAATTTANDHKEEGGPQEFSYDLIFAEFADQINDNHYHHHHHSTDPLNNNLLLFSSHGFSTGNDQECSKDPFLELYDWAENSNESLFKDAKGG 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 11067848 11071172 + Lag0025305.1 Lac10g1260 583791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g1260 420 SMART WRKY_cls 210 270 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac10g1260 420 MobiDBLite consensus disorder prediction 267 342 - -
Lac10g1260 420 SUPERFAMILY WRKY DNA-binding domain 208 271 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac10g1260 420 MobiDBLite consensus disorder prediction 267 296 - -
Lac10g1260 420 Pfam WRKY DNA -binding domain 212 269 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac10g1260 420 Gene3D WRKY domain 183 264 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac10g1260 420 MobiDBLite consensus disorder prediction 118 186 - -
Lac10g1260 420 FunFam probable WRKY transcription factor 14 183 264 - -
Lac10g1260 420 MobiDBLite consensus disorder prediction 118 144 - -
Lac10g1260 420 MobiDBLite consensus disorder prediction 157 180 - -
Lac10g1260 420 ProSiteProfiles WRKY domain profile. 205 271 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac10g1260 420 MobiDBLite consensus disorder prediction 297 325 - -
Lac10g1260 420 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 85 363 IPR044810 GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0979 Lac-Chr10:7845308 Lac10g1260 Lac-Chr10:11067848 1.80E-31 dispersed
Lac10g1260 Lac-Chr10:11067848 Lac1g3622 Lac-Chr1:55313147 3.50E-63 dispersed
Lac10g1260 Lac-Chr10:11067848 Lac7g0201 Lac-Chr7:1573823 6.60E-38 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22775 PF03106 WRKY 2.20E-25 CL0274 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g1260 - - - 0.0