Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac10g1284 ATGAAGGAGAACAGAAAACAGGGAGGAGCAGCGCCATGCGCAGCATGCAAGCTGCTGAGAAGAAGATGCGCAGAGGAATGCGTATTTGCGCCATACTTTCCCGCAGAGGAACCCCACAAGTTCGCCAATGTTCACAAAGTCTTCGGCGCCAGCAATGTCAACAAAATGCTTCAGGAGTTGCCAATTCACCAACGGGGAGATGCAGTGAGCAGTTTGGTGTACGAAGCGAATGCTCGAGTGCGCGACCCAGTCTACGGGTGCGTCGGAGCCATATCGTCTCTGCAGCAGCAGATAGATGCCCTCCAAACCCAGCTGGCTCTAGCTCAAGCCGAGGTGGTGCACCTGCGGGTGCGTCAGACAGCATCATTCTCAAACTATGGGCTAAGCCCAACAAGCCCAAGTAACAGTGGGTCACCCTCATCAAGGCTCATGGGCTCACAATCCAGGCCCATGTTTGAGATGGATATGGTTGTGGACCAGGCCATGGGGGACTCAATGTGGTGA 504 54.56 MKENRKQGGAAPCAACKLLRRRCAEECVFAPYFPAEEPHKFANVHKVFGASNVNKMLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVRQTASFSNYGLSPTSPSNSGSPSSRLMGSQSRPMFEMDMVVDQAMGDSMW 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 11430852 11433758 + Lag0025329.1 Lac10g1284 583815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac10g1284 167 Pfam Lateral organ boundaries (LOB) domain 12 109 IPR004883 -
Lac10g1284 167 Coils Coil 91 118 - -
Lac10g1284 167 ProSiteProfiles LOB domain profile. 11 112 IPR004883 -
Lac10g1284 167 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 132 - -
Lac10g1284 167 MobiDBLite consensus disorder prediction 126 149 - -
Lac10g1284 167 MobiDBLite consensus disorder prediction 126 147 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g1284 Lac-Chr10:11430852 Lac9g2273 Lac-Chr9:42086121 1.90E-60 dispersed
Lac13g0866 Lac-Chr13:7040530 Lac10g1284 Lac-Chr10:11430852 4.40E-29 transposed
Lac13g1175 Lac-Chr13:10408470 Lac10g1284 Lac-Chr10:11430852 6.40E-45 transposed
Lac9g2362 Lac-Chr9:42835271 Lac10g1284 Lac-Chr10:11430852 6.00E-40 transposed
Lac10g1284 Lac-Chr10:11430852 Lac13g1006 Lac-Chr13:8504206 4.30E-25 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22777 PF03195 LOB 2.50E-43 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac10g1284 - - - 0.0