Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac10g1284 | ATGAAGGAGAACAGAAAACAGGGAGGAGCAGCGCCATGCGCAGCATGCAAGCTGCTGAGAAGAAGATGCGCAGAGGAATGCGTATTTGCGCCATACTTTCCCGCAGAGGAACCCCACAAGTTCGCCAATGTTCACAAAGTCTTCGGCGCCAGCAATGTCAACAAAATGCTTCAGGAGTTGCCAATTCACCAACGGGGAGATGCAGTGAGCAGTTTGGTGTACGAAGCGAATGCTCGAGTGCGCGACCCAGTCTACGGGTGCGTCGGAGCCATATCGTCTCTGCAGCAGCAGATAGATGCCCTCCAAACCCAGCTGGCTCTAGCTCAAGCCGAGGTGGTGCACCTGCGGGTGCGTCAGACAGCATCATTCTCAAACTATGGGCTAAGCCCAACAAGCCCAAGTAACAGTGGGTCACCCTCATCAAGGCTCATGGGCTCACAATCCAGGCCCATGTTTGAGATGGATATGGTTGTGGACCAGGCCATGGGGGACTCAATGTGGTGA | 504 | 54.56 | MKENRKQGGAAPCAACKLLRRRCAEECVFAPYFPAEEPHKFANVHKVFGASNVNKMLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVRQTASFSNYGLSPTSPSNSGSPSSRLMGSQSRPMFEMDMVVDQAMGDSMW | 167 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 11430852 | 11433758 | + | Lag0025329.1 | Lac10g1284 | 583815 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac10g1284 | 167 | Pfam | Lateral organ boundaries (LOB) domain | 12 | 109 | IPR004883 | - | |
Lac10g1284 | 167 | Coils | Coil | 91 | 118 | - | - | |
Lac10g1284 | 167 | ProSiteProfiles | LOB domain profile. | 11 | 112 | IPR004883 | - | |
Lac10g1284 | 167 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 11 | 132 | - | - | |
Lac10g1284 | 167 | MobiDBLite | consensus disorder prediction | 126 | 149 | - | - | |
Lac10g1284 | 167 | MobiDBLite | consensus disorder prediction | 126 | 147 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac10g1284 | Lac-Chr10:11430852 | Lac9g2273 | Lac-Chr9:42086121 | 1.90E-60 | dispersed | |
Lac13g0866 | Lac-Chr13:7040530 | Lac10g1284 | Lac-Chr10:11430852 | 4.40E-29 | transposed | |
Lac13g1175 | Lac-Chr13:10408470 | Lac10g1284 | Lac-Chr10:11430852 | 6.40E-45 | transposed | |
Lac9g2362 | Lac-Chr9:42835271 | Lac10g1284 | Lac-Chr10:11430852 | 6.00E-40 | transposed | |
Lac10g1284 | Lac-Chr10:11430852 | Lac13g1006 | Lac-Chr13:8504206 | 4.30E-25 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
22777 | PF03195 | LOB | 2.50E-43 | No_clan | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac10g1284 | - | - | - | 0.0 |